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Voß S, Niemann U, Saalfeld S, Janiga G, Berg P. Impact of workflow variability on image-based intracranial aneurysm hemodynamics. Comput Biol Med 2025; 190:110018. [PMID: 40107023 DOI: 10.1016/j.compbiomed.2025.110018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Revised: 03/06/2025] [Accepted: 03/10/2025] [Indexed: 03/22/2025]
Abstract
The interplay between intracranial aneurysm progression and hemodynamics motivates the application of image-based blood flow quantification, providing potential for the identification of high-risk aneurysms, treatment planning, and implant optimization. However, uncertainties arise throughout the interdisciplinary process, from medical imaging to parameter evaluation. This study systematically analyzes uncertainty globally, at individual workflow steps and for potential interactions. Eight factors affecting hemodynamic simulation accuracy - image reconstruction, lumen segmentation, surface smoothing, rheological modeling, inlet/outlet boundary condition, ostium/parent vessel definition - are varied for four representative patient-specific intracranial aneurysms. A total of 1024 transient simulations are evaluated considering twelve hemodynamic parameters to assess marginal and interaction effects. Global uncertainty analysis reveals median absolute deviations of 20.8-25.9 % for maximum velocity (Vmax), 6.8-19.2 % for inflow concentration index (ICI), 10.8-40.8 % for normalized wall shear stress (WSSnorm) and 2.8-48.9 % for low shear area (LSA). Isolated variation demonstrates the highest median deviations for the reconstruction algorithm (Vmax: 4.0-7.0 %, ICI: 6.8-18.9 %, WSSnorm: 13.3-25.1 %, LSA: 2.4-16.0 %), inlet (Vmax: 41.5-52.4 %, ICI: 1.4-8.6 %, WSSnorm: 14.6-28.5 %, LSA: 5.5-93.5 %) and outlet boundary condition (Vmax: 2.0-36.5 %, ICI: 0.6-39.9 %, WSSnorm: 2.4-83.2 %, LSA: 1.9-53.5 %). Lowest median deviations are found for rheological modeling and surface smoothing. Only minor interaction effects are observed between the reconstruction algorithm and inlet definition, as well as between inlet and outlet definitions. This study identifies pivotal variables essential for consistent hemodynamic quantification of intracranial aneurysms. Minimal interaction effects validate the isolated analysis of influencing factors in the majority of cases.
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Affiliation(s)
- Samuel Voß
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany; Forschungscampus STIMULATE, Magdeburg, Germany.
| | - Uli Niemann
- University Library, University of Magdeburg, Magdeburg, Germany
| | - Sylvia Saalfeld
- Forschungscampus STIMULATE, Magdeburg, Germany; Department of Medical Informatics, University Medical Center Schleswig-Holstein, Kiel, Germany
| | - Gábor Janiga
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany; Forschungscampus STIMULATE, Magdeburg, Germany
| | - Philipp Berg
- Forschungscampus STIMULATE, Magdeburg, Germany; Department of Medical Engineering, University of Magdeburg, Magdeburg, Germany
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2
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Song M, Wang S, Qian Q, Zhou Y, Luo Y, Gong X. Intracranial aneurysm CTA images and 3D models dataset with clinical morphological and hemodynamic data. Sci Data 2024; 11:1213. [PMID: 39532900 PMCID: PMC11557944 DOI: 10.1038/s41597-024-04056-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 10/31/2024] [Indexed: 11/16/2024] Open
Abstract
Intracranial aneurysm is a cerebrovascular disease associated with a high rupture risk, often resulting in death or severe disability. Recent advances in AI enable the prediction of intracranial aneurysm initiation, progression, and rupture through medical image analysis. Despite growing research interest, there is a shortage of publicly available datasets for training and validating AI models. This paper presents a comprehensive dataset comprising high-resolution CTA images of 99 patients with 105 MCA aneurysms and 44 normal healthy controls, along with their respective clinical data and 3D models of aneurysms and the parent arteries derived from the CTA images. Furthermore, recognizing the significance of blood hemodynamics on aneurysm development, this dataset also included the morphological and hemodynamic parameters obtained by computational fluid dynamics (CFD) for each patient and healthy control, which can be utilized by researchers without prior CFD experience. This dataset will facilitate hypothesis-driven or data-driven research on intracranial aneurysms, and has the potential to deepen our understanding of this disease.
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Affiliation(s)
- Miao Song
- College of Information Engineering, Shanghai Maritime University, Shanghai, 201306, China
| | - Simin Wang
- College of Information Engineering, Shanghai Maritime University, Shanghai, 201306, China
| | - Qian Qian
- Yunnan Key Laboratory of Computer Technology Applications, Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, 650504, China
| | - Yuan Zhou
- Logistics Engineering College, Shanghai Maritime University, Shanghai, 201306, China
| | - Yi Luo
- Department of Radiology, the First Affiliated Hospital of University of Science and Technology of China, Hefei, Anhui, 230036, China
| | - Xijun Gong
- Department of Radiology, the Second Affiliated Hospital of Anhui Medical University, Hefei, Anhui, 230032, China.
- Medical Imaging Center, Anhui Medical University, Hefei, Anhui, 230032, China.
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3
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Huang F, Janiga G, Berg P, Hosseini SA. On flow fluctuations in ruptured and unruptured intracranial aneurysms: resolved numerical study. Sci Rep 2024; 14:19658. [PMID: 39179594 PMCID: PMC11344026 DOI: 10.1038/s41598-024-70340-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 08/14/2024] [Indexed: 08/26/2024] Open
Abstract
Flow fluctuations have emerged as a promising hemodynamic metric for understanding of hemodynamics in intracranial aneurysms. Several investigations have reported flow instabilities using numerical tools. In this study, the occurrence of flow fluctuations is investigated using either Newtonian or non-Newtonian fluid models in five patient-specific intracranial aneurysms using high-resolution lattice Boltzmann simulation methods. Flow instabilities are quantified by computing power spectral density, proper orthogonal decomposition, and fluctuating kinetic energy of velocity fluctuations. Our simulations reveal substantial flow instabilities in two of the ruptured aneurysms, where the pulsatile inflow through the neck leads to hydrodynamic instability, particularly around the rupture position, throughout the entire cardiac cycle. In other monitoring points, the flow instability is primarily observed during the deceleration phase; typically, the fluctuations begin just after peak systole, gradually decay, and the flow returns to its original, laminar pulsatile state during diastole. Additionally, we assess the rheological impact on flow dynamics. The disparity between Newtonian and non-Newtonian outcomes remains minimal in unruptured aneurysms, with less than a 5% difference in key metrics. However, in ruptured cases, adopting a non-Newtonian model yields a substantial increase in the fluctuations within the aneurysm sac, with up to a 30% higher fluctuating kinetic energy compared to the Newtonian model. The study highlights the importance of using appropriate high-resolution simulations and non-Newtonian models to capture flow fluctuation characteristics that may be critical for assessing aneurysm rupture risk.
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Affiliation(s)
- Feng Huang
- Laboratory of Fluid Dynamics and Technical Flows, Otto-von-Guericke-University Magdeburg, D-39106, Magdeburg, Germany
| | - Gábor Janiga
- Laboratory of Fluid Dynamics and Technical Flows, Otto-von-Guericke-University Magdeburg, D-39106, Magdeburg, Germany
| | - Philipp Berg
- Research Campus STIMULATE, Otto-von-Guericke-University Magdeburg, D-39106, Magdeburg, Germany
- Department of Medical Engineering, Otto-von-Guericke-University Magdeburg, D-39106, Magdeburg, Germany
| | - Seyed Ali Hosseini
- Department of Mechanical and Process Engineering, ETH Zürich, 8092, Zürich, Switzerland.
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Suk J, de Haan P, Lippe P, Brune C, Wolterink JM. Mesh neural networks for SE(3)-equivariant hemodynamics estimation on the artery wall. Comput Biol Med 2024; 173:108328. [PMID: 38552282 DOI: 10.1016/j.compbiomed.2024.108328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 01/29/2024] [Accepted: 03/17/2024] [Indexed: 04/17/2024]
Abstract
Computational fluid dynamics (CFD) is a valuable asset for patient-specific cardiovascular-disease diagnosis and prognosis, but its high computational demands hamper its adoption in practice. Machine-learning methods that estimate blood flow in individual patients could accelerate or replace CFD simulation to overcome these limitations. In this work, we consider the estimation of vector-valued quantities on the wall of three-dimensional geometric artery models. We employ group-equivariant graph convolution in an end-to-end SE(3)-equivariant neural network that operates directly on triangular surface meshes and makes efficient use of training data. We run experiments on a large dataset of synthetic coronary arteries and find that our method estimates directional wall shear stress (WSS) with an approximation error of 7.6% and normalised mean absolute error (NMAE) of 0.4% while up to two orders of magnitude faster than CFD. Furthermore, we show that our method is powerful enough to accurately predict transient, vector-valued WSS over the cardiac cycle while conditioned on a range of different inflow boundary conditions. These results demonstrate the potential of our proposed method as a plugin replacement for CFD in the personalised prediction of hemodynamic vector and scalar fields.
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Affiliation(s)
- Julian Suk
- Department of Applied Mathematics & Technical Medical Center, University of Twente, Enschede, 7522 NB, The Netherlands.
| | - Pim de Haan
- Qualcomm AI Research, Qualcomm Technologies Netherlands B.V., Nijmegen, 6546 AS, The Netherlands; QUVA Lab, University of Amsterdam, Amsterdam, 1012 WX, The Netherlands
| | - Phillip Lippe
- QUVA Lab, University of Amsterdam, Amsterdam, 1012 WX, The Netherlands
| | - Christoph Brune
- Department of Applied Mathematics & Technical Medical Center, University of Twente, Enschede, 7522 NB, The Netherlands
| | - Jelmer M Wolterink
- Department of Applied Mathematics & Technical Medical Center, University of Twente, Enschede, 7522 NB, The Netherlands
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Niemann A, Tulamo R, Netti E, Preim B, Berg P, Cebral J, Robertson A, Saalfeld S. Multimodal exploration of the intracranial aneurysm wall. Int J Comput Assist Radiol Surg 2023; 18:2243-2252. [PMID: 36877287 PMCID: PMC10480333 DOI: 10.1007/s11548-023-02850-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2022] [Accepted: 02/02/2023] [Indexed: 03/07/2023]
Abstract
PURPOSE Intracranial aneurysms (IAs) are pathological changes of the intracranial vessel wall, although clinical image data can only show the vessel lumen. Histology can provide wall information but is typically restricted to ex vivo 2D slices where the shape of the tissue is altered. METHODS We developed a visual exploration pipeline for a comprehensive view of an IA. We extract multimodal information (like stain classification and segmentation of histologic images) and combine them via 2D to 3D mapping and virtual inflation of deformed tissue. Histological data, including four stains, micro-CT data and segmented calcifications as well as hemodynamic information like wall shear stress (WSS), are combined with the 3D model of the resected aneurysm. RESULTS Calcifications were mostly present in the tissue part with increased WSS. In the 3D model, an area of increased wall thickness was identified and correlated to histology, where the Oil red O (ORO) stained images showed a lipid accumulation and the alpha-smooth muscle actin (aSMA) stained images showed a slight loss of muscle cells. CONCLUSION Our visual exploration pipeline combines multimodal information about the aneurysm wall to improve the understanding of wall changes and IA development. The user can identify regions and correlate how hemodynamic forces, e.g. WSS, are reflected by histological structures of the vessel wall, wall thickness and calcifications.
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Affiliation(s)
- Annika Niemann
- Department of Simulation and Graphics, Otto-von-Guericke University, Magdeburg, Germany
- STIMULATE Research Campus, Magdeburg, Germany
| | - Riikka Tulamo
- Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Eliisa Netti
- Faculty of Medicine, University of Helsinki, Helsinki, Finland
| | - Bernhard Preim
- Department of Simulation and Graphics, Otto-von-Guericke University, Magdeburg, Germany
- STIMULATE Research Campus, Magdeburg, Germany
| | - Philipp Berg
- STIMULATE Research Campus, Magdeburg, Germany
- Department of Medical Engineering, Otto-von-Guericke University Magdeburg, Magdeburg, Germany
| | - Juan Cebral
- Computational Hemodynamics Lab, Georg Mason University, Fairfax, USA
| | - Anne Robertson
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh, Pittsburgh, USA
| | - Sylvia Saalfeld
- Department of Simulation and Graphics, Otto-von-Guericke University, Magdeburg, Germany.
- STIMULATE Research Campus, Magdeburg, Germany.
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Chen B, Huang S, Zhang L, Yang L, Liu Y, Li C. Global tendencies and frontier topics in hemodynamics research of intracranial aneurysms: a bibliometric analysis from 1999 to 2022. Front Physiol 2023; 14:1157787. [PMID: 38074335 PMCID: PMC10703161 DOI: 10.3389/fphys.2023.1157787] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 09/25/2023] [Indexed: 10/11/2024] Open
Abstract
Background: Hemodynamics plays a crucial role in the initiation, enlargement, and rupture of intracranial aneurysms (IAs). This bibliometric analysis aimed to map the knowledge network of IA hemodynamic research. Methods: Studies on hemodynamics in IAs published from 1999 to 2022 were retrieved from the Web of Science Core Collection (WoSCC). The contributions of countries, institutions, authors, and journals were identified using VOSviewer, Scimago Graphica, and Microsoft Excel. Tendencies, frontier topics, and knowledge networks were analyzed and visualized using VOSviewer and CiteSpace. Results: We identified 2,319 publications on hemodynamics in IAs. The annual number of publications exhibited an overall increasing trend. Among these, the United States, Japan, and China were the three major contributing countries. Capital Medical University, State University of New York (SUNY) Buffalo University, and George Mason University were the three most productive institutions. Meng H ranked first among authors regarding the number of articles and citations, while Cebral JR was first among co-cited authors. The American Journal of Neuroradiology was the top journal in terms of the number of publications, citations, and co-citations. In addition, the research topics can be divided into three clusters: hemodynamics itself, the relationship of hemodynamics with IA rupture, and the relationship of hemodynamics with IA treatment. The frontier directions included flow diverters, complications, morphology, prediction, recanalization, and four-dimensional flow magnetic resonance imaging (4D flow MRI). Conclusion: This study drew a knowledge map of the top countries, institutions, authors, publications, and journals on IA hemodynamics over the past 2 decades. The current and future hotspots of IA hemodynamics mainly include hemodynamics itself (4D flow MRI), its relationship with IA rupture (morphology and prediction), and its relationship with IA treatment (flow diverters, complications, and recanalization).
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Affiliation(s)
- Bo Chen
- Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, China
- Department of Surgery, LKS Faculty of Medicine, School of Clinical Medicine, Queen Mary Hospital, The University of Hong Kong, Pokfulam, Hong Kong SAR, China
- National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Siting Huang
- Department of Dermatology, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Liyang Zhang
- Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, China
- National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, Hunan, China
- Hypothalamic-Pituitary Research Center, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Liting Yang
- Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, China
- National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, Hunan, China
- Hypothalamic-Pituitary Research Center, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Yuanyuan Liu
- National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, Hunan, China
| | - Chuntao Li
- Department of Neurosurgery, Xiangya Hospital, Central South University, Changsha, Hunan, China
- National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha, Hunan, China
- Hypothalamic-Pituitary Research Center, Xiangya Hospital, Central South University, Changsha, Hunan, China
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7
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Korte J, Voß S, Janiga G, Beuing O, Behme D, Saalfeld S, Berg P. Is Accurate Lumen Segmentation More Important than Outlet Boundary Condition in Image-Based Blood Flow Simulations for Intracranial Aneurysms? Cardiovasc Eng Technol 2023; 14:617-630. [PMID: 37582997 PMCID: PMC10602961 DOI: 10.1007/s13239-023-00675-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 07/17/2023] [Indexed: 08/17/2023]
Abstract
PURPOSE Image-based blood flow simulations are increasingly used to investigate the hemodynamics in intracranial aneurysms (IAs). However, a strong variability in segmentation approaches as well as the absence of individualized boundary conditions (BCs) influence the quality of these simulation results leading to imprecision and decreased reliability. This study aims to analyze these influences on relevant hemodynamic parameters within IAs. METHODS As a follow-up study of an international multiple aneurysms challenge, the segmentation results of five IAs differing in size and location were investigated. Specifically, five possible outlet BCs were considered in each of the IAs. These are comprised of the zero-pressure condition (BC1), a flow distribution based on Murray's law with the exponents n = 2 (BC2) and n = 3 (BC3) as well as two advanced flow-splitting models considering the real vessels by including circular cross sections (BC4) or anatomical cross sections (BC5), respectively. In total, 120 time-dependent blood flow simulations were analyzed qualitatively and quantitatively, focusing on five representative intra-aneurysmal flow and five shear parameters such as vorticity and wall shear stress. RESULTS The outlet BC variation revealed substantial differences. Higher shear stresses (up to Δ9.69 Pa), intrasaccular velocities (up to Δ0.15 m/s) and vorticities (up to Δ629.22 1/s) were detected when advanced flow-splitting was applied compared to the widely used zero-pressure BC. The tendency of outlets BCs to over- or underestimate hemodynamic parameters is consistent across different segmentations of a single aneurysm model. Segmentation-induced variability reaches Δ19.58 Pa, Δ0.42 m/s and Δ957.27 1/s, respectively. Excluding low fidelity segmentations, however, (a) reduces the deviation drastically (>43%) and (b) leads to a lower impact of the outlet BC on hemodynamic predictions. CONCLUSION With a more realistic lumen segmentation, the influence of the BC on the resulting hemodynamics is decreased. A realistic lumen segmentation can be ensured, e.g., by using high-resolved 2D images. Furthermore, the selection of an advanced outflow-splitting model is advised and the use of a zero-pressure BC and BC based on Murray's law with exponent n = 3 should be avoided.
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Affiliation(s)
- Jana Korte
- Forschungscampus STIMULATE, University of Magdeburg, Magdeburg, Germany.
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany.
| | - Samuel Voß
- Forschungscampus STIMULATE, University of Magdeburg, Magdeburg, Germany
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany
| | - Gábor Janiga
- Forschungscampus STIMULATE, University of Magdeburg, Magdeburg, Germany
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany
| | - Oliver Beuing
- Department of Radiology, AMEOS Hospital, Bernburg, Germany
| | - Daniel Behme
- Department of Neuroradiology, University Hospital of Magdeburg, Magdeburg, Germany
| | - Sylvia Saalfeld
- Forschungscampus STIMULATE, University of Magdeburg, Magdeburg, Germany
- Department of Computer Science and Automation, Ilmenau University of Technology, Ilmenau , Germany
| | - Philipp Berg
- Forschungscampus STIMULATE, University of Magdeburg, Magdeburg, Germany
- Department of Medical Engineering, University of Magdeburg, Magdeburg, Germany
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Reproducibility of the computational fluid dynamic analysis of a cerebral aneurysm monitored over a decade. Sci Rep 2023; 13:219. [PMID: 36604495 PMCID: PMC9816094 DOI: 10.1038/s41598-022-27354-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 12/30/2022] [Indexed: 01/06/2023] Open
Abstract
Computational fluid dynamics (CFD) simulations are increasingly utilised to evaluate intracranial aneurysm (IA) haemodynamics to aid in the prediction of morphological changes and rupture risk. However, these models vary and differences in published results warrant the investigation of IA-CFD reproducibility. This study aims to explore sources of intra-team variability and determine its impact on the aneurysm morphology and CFD parameters. A team of four operators were given six sets of magnetic resonance angiography data spanning a decade from one patient with a middle cerebral aneurysm. All operators were given the same protocol and software for model reconstruction and numerical analysis. The morphology and haemodynamics of the operator models were then compared. The segmentation, smoothing factor, inlet and outflow branch lengths were found to cause intra-team variability. There was 80% reproducibility in the time-averaged wall shear stress distribution among operators with the major difference attributed to the level of smoothing. Based on these findings, it was concluded that the clinical applicability of CFD simulations may be feasible if a standardised segmentation protocol is developed. Moreover, when analysing the aneurysm shape change over a decade, it was noted that the co-existence of positive and negative values of the wall shear stress divergence (WSSD) contributed to the growth of a daughter sac.
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Ivantsits M, Goubergrits L, Kuhnigk JM, Huellebrand M, Bruening J, Kossen T, Pfahringer B, Schaller J, Spuler A, Kuehne T, Jia Y, Li X, Shit S, Menze B, Su Z, Ma J, Nie Z, Jain K, Liu Y, Lin Y, Hennemuth A. Detection and analysis of cerebral aneurysms based on X-ray rotational angiography - the CADA 2020 challenge. Med Image Anal 2022; 77:102333. [PMID: 34998111 DOI: 10.1016/j.media.2021.102333] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 10/12/2021] [Accepted: 12/07/2021] [Indexed: 01/10/2023]
Abstract
The Cerebral Aneurysm Detection and Analysis (CADA) challenge was organized to support the development and benchmarking of algorithms for detecting, analyzing, and risk assessment of cerebral aneurysms in X-ray rotational angiography (3DRA) images. 109 anonymized 3DRA datasets were provided for training, and 22 additional datasets were used to test the algorithmic solutions. Cerebral aneurysm detection was assessed using the F2 score based on recall and precision, and the fit of the delivered bounding box was assessed using the distance to the aneurysm. The segmentation quality was measured using the Jaccard index and a combination of different surface distance measures. Systematic errors were analyzed using volume correlation and bias. Rupture risk assessment was evaluated using the F2 score. 158 participants from 22 countries registered for the CADA challenge. The U-Net-based detection solutions presented by the community show similar accuracy compared to experts (F2 score 0.92), with a small number of missed aneurysms with diameters smaller than 3.5 mm. In addition, the delineation of these structures, based on U-Net variations, is excellent, with a Jaccard score of 0.92. The rupture risk estimation methods achieved an F2 score of 0.71. The performance of the detection and segmentation solutions is equivalent to that of human experts. The best results are obtained in rupture risk estimation by combining different image-based, morphological, and computational fluid dynamic parameters using machine learning methods. Furthermore, we evaluated the best methods pipeline, from detecting and delineating the vessel dilations to estimating the risk of rupture. The chain of these methods achieves an F2-score of 0.70, which is comparable to applying the risk prediction to the ground-truth delineation (0.71).
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Affiliation(s)
- Matthias Ivantsits
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany.
| | - Leonid Goubergrits
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; Einstein Center Digital Future, Wilhelmstrae 67, Berlin 10117, Germany
| | | | - Markus Huellebrand
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; Fraunhofer MEVIS, Am Fallturm 1, Bremen 28359, Germany
| | - Jan Bruening
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany
| | - Tabea Kossen
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany
| | - Boris Pfahringer
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany
| | - Jens Schaller
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany
| | - Andreas Spuler
- Helios Hospital Berlin-Buch, Schwanebecker Chaussee 50, Berlin 13125, Germany
| | - Titus Kuehne
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; German Heart Centre Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; DZHK (German Centre for Cardiovascular Research), Berlin, Germany
| | - Yizhuan Jia
- Mediclouds Medical Technology, Beijing, China
| | - Xuesong Li
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Suprosanna Shit
- Departments of Informatics, Technical University Munich, Germany; TranslaTUM Center for Translational Cancer Research, Munich, Germany
| | - Bjoern Menze
- Departments of Informatics, Technical University Munich, Germany; TranslaTUM Center for Translational Cancer Research, Munich, Germany; Department of Quantitative Biomedicine of UZH, Zurich, Switzerland
| | - Ziyu Su
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China
| | - Jun Ma
- Department of Mathematics, Nanjing University of Science and Technology, Nanjing, China
| | - Ziwei Nie
- Department of Mathematics, Nanjing University, Nanjing, China
| | - Kartik Jain
- Faculty of Engineering Technology, University of Twente, P.O. Box 217, Enschede 7500, AE, the Netherlands
| | - Yanfei Liu
- Jarvis Lab, Tencent, Shenzhen, China; Shenzhen United Imaging Research Institute of Innovative Medical Equipment Innovation Research, Shenzhen, China
| | - Yi Lin
- Jarvis Lab, Tencent, Shenzhen, China
| | - Anja Hennemuth
- Charit Universittsmedizin Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; Fraunhofer MEVIS, Am Fallturm 1, Bremen 28359, Germany; German Heart Centre Berlin, Augustenburger Pl. 1, Berlin 13353, Germany; DZHK (German Centre for Cardiovascular Research), Berlin, Germany
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10
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Yin JH, Su SX, Zhang X, Bi YM, Duan CZ, Huang WM, Wang XL. U-Shaped Association of Aspect Ratio and Single Intracranial Aneurysm Rupture in Chinese Patients: A Cross-Sectional Study. Front Neurol 2021; 12:731129. [PMID: 34803880 PMCID: PMC8598388 DOI: 10.3389/fneur.2021.731129] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Accepted: 09/27/2021] [Indexed: 01/02/2023] Open
Abstract
Background: Previous studies have analyzed the association of aspect ratio (AR) on the ruptured intracranial aneurysm (IA), but the findings are inconclusive and controversial. Therefore, the study aimed to derive a more detailed estimation of this association between AR and ruptured IA in Chinese IA patients. Methods: The present work was a cross-sectional study. We retrospectively collected 1,588 Chinese patients with a single IA from January 2010 to November 2017. The relationship was examined between AR at diagnosis and ruptured IA. Covariates included data of demographics, morphological parameters, lifestyle habits, clinical features, and comorbidities. Binary logistic regression and two-piecewise linear models were used to analyze independent associations of AR with ruptured IA. Results: The results suggest that the association between AR and IA rupture was U-shaped. In the AR range of 1.08-1.99, the prevalence of IA rupture was 13% lower for each 0.1-unit increment in AR [odds ratio 0.87, 95% confidence interval (CI) 0.80-0.98]. Conversely, for every 0.1-unit increase in AR, the prevalence of IA rupture increased by ~3% (odds ratio 1.03, 95% CI 1.01-1.06) in the AR range of 3.42-4.08. Conclusion: The relationship between AR and ruptured IA was U-shaped, with the negative association at AR of 1.08-1.99 and positive association at AR of 3.42-4.08.
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Affiliation(s)
- Jia-He Yin
- National Key Clinical Specialty/Engineering Technology Research Center of Education Ministry of China, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Neurosurgery Institute, Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Shi-Xing Su
- National Key Clinical Specialty/Engineering Technology Research Center of Education Ministry of China, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Neurosurgery Institute, Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Xin Zhang
- National Key Clinical Specialty/Engineering Technology Research Center of Education Ministry of China, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Neurosurgery Institute, Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Yi-Ming Bi
- National Key Clinical Specialty/Engineering Technology Research Center of Education Ministry of China, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Neurosurgery Institute, Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China.,Department of Interventional Treatment, Southern Medical University, Guangzhou, China
| | - Chuan-Zhi Duan
- National Key Clinical Specialty/Engineering Technology Research Center of Education Ministry of China, Guangdong Provincial Key Laboratory on Brain Function Repair and Regeneration, Neurosurgery Institute, Department of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China
| | - Wei-Mei Huang
- Department of Traditional Chinese Medicine, Southern Medical University, Guangzhou, China
| | - Xi-Long Wang
- Department of Traditional Chinese Medicine, Southern Medical University, Guangzhou, China
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11
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Yevtushenko P, Goubergrits L, Gundelwein L, Setio A, Ramm H, Lamecker H, Heimann T, Meyer A, Kuehne T, Schafstedde M. Deep Learning Based Centerline-Aggregated Aortic Hemodynamics: An Efficient Alternative to Numerical Modelling of Hemodynamics. IEEE J Biomed Health Inform 2021; 26:1815-1825. [PMID: 34591773 DOI: 10.1109/jbhi.2021.3116764] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Image-based patient-specific modelling of hemodynamics are gaining increased popularity as a diagnosis and outcome prediction solution for a variety of cardiovascular diseases. While their potential to improve diagnostic capabilities and thereby clinical outcome is widely recognized, these methods require considerable computational resources since they are mostly based on conventional numerical methods such as computational fluid dynamics (CFD). As an alternative to the numerical methods, we propose a machine learning (ML) based approach to calculate patient-specific hemodynamic parameters. Compared to CFD based methods, our approach holds the benefit of being able to calculate a patient-specific hemodynamic outcome instantly with little need for computational power. In this proof-of-concept study, we present a deep artificial neural network (ANN) capable of computing hemodynamics for patients with aortic coarctation in a centerline aggregated (i.e. locally averaged) form. Considering the complex relation between vessels shape and hemodynamics on the one hand and the limited availability of suitable clinical data on the other, a sufficient accuracy of the ANN may however not be achieved with available data only. Another key aspect of this study is therefore the successful augmentation of available clinical data. Using a statistical shape model, additional training data was generated which substantially increased the ANNs accuracy, showcasing the ability of ML based methods to perform in-silico modelling tasks previously requiring resource intensive CFD simulations.
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12
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Morphological and Hemodynamic Changes during Cerebral Aneurysm Growth. Brain Sci 2021; 11:brainsci11040520. [PMID: 33921861 PMCID: PMC8073033 DOI: 10.3390/brainsci11040520] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2021] [Revised: 04/05/2021] [Accepted: 04/09/2021] [Indexed: 11/17/2022] Open
Abstract
Computational fluid dynamics (CFD) has grown as a tool to help understand the hemodynamic properties related to the rupture of cerebral aneurysms. Few of these studies deal specifically with aneurysm growth and most only use a single time instance within the aneurysm growth history. The present retrospective study investigated four patient-specific aneurysms, once at initial diagnosis and then at follow-up, to analyze hemodynamic and morphological changes. Aneurysm geometries were segmented via the medical image processing software Mimics. The geometries were meshed and a computational fluid dynamics (CFD) analysis was performed using ANSYS. Results showed that major geometry bulk growth occurred in areas of low wall shear stress (WSS). Wall shape remodeling near neck impingement regions occurred in areas with large gradients of WSS and oscillatory shear index. This study found that growth occurred in areas where low WSS was accompanied by high velocity gradients between the aneurysm wall and large swirling flow structures. A new finding was that all cases showed an increase in kinetic energy from the first time point to the second, and this change in kinetic energy seems correlated to the change in aneurysm volume.
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13
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Amigo N, Valencia A, Wu W, Patnaik S, Finol E. Cerebral aneurysm rupture status classification using statistical and machine learning methods. Proc Inst Mech Eng H 2021; 235:655-662. [PMID: 33685288 DOI: 10.1177/09544119211000477] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Morphological characterization and fluid dynamics simulations were carried out to classify the rupture status of 71 (36 unruptured, 35 ruptured) patient specific cerebral aneurysms using a machine learning approach together with statistical techniques. Eleven morphological and six hemodynamic parameters were evaluated individually and collectively for significance as rupture status predictors. The performance of each parameter was inspected using hypothesis testing, accuracy, confusion matrix, and the area under the receiver operating characteristic curve. Overall, the size ratio exhibited the best performance, followed by the diastolic wall shear stress, and systolic wall shear stress. The prediction capability of all 17 parameters together was evaluated using eight different machine learning algorithms. The logistic regression achieved the highest accuracy (0.75), whereas the random forest had the highest area under curve value among all the classifiers (0.82), surpassing the performance exhibited by the size ratio. Hence, we propose the random forest model as a tool that can help improve the rupture status prediction of cerebral aneurysms.
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Affiliation(s)
- Nicolás Amigo
- Escuela de Data Science, Facultad de Estudios Interdisciplinarios, Universidad Mayor, Santiago, Chile
| | - Alvaro Valencia
- Departamento de Ingeniera Mecánica, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Santiago, Chile
| | - Wei Wu
- Department of Mechanical Engineering, University of Texas at San Antonio, San Antonio, TX, USA.,Cardiovascular Division, College of Medicine, University of Nebraska Medical Center, Omaha, Nebraska, USA
| | - Sourav Patnaik
- Department of Mechanical Engineering, University of Texas at San Antonio, San Antonio, TX, USA.,Department of Bioengineering, University of Texas at Dallas, Dallas, TX, USA
| | - Ender Finol
- Department of Mechanical Engineering, University of Texas at San Antonio, San Antonio, TX, USA
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14
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Pravdivtseva MS, Peschke E, Lindner T, Wodarg F, Hensler J, Gabbert D, Voges I, Berg P, Barker AJ, Jansen O, Hövener JB. 3D-printed, patient-specific intracranial aneurysm models: From clinical data to flow experiments with endovascular devices. Med Phys 2021; 48:1469-1484. [PMID: 33428778 DOI: 10.1002/mp.14714] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2020] [Revised: 12/30/2020] [Accepted: 12/31/2020] [Indexed: 12/14/2022] Open
Abstract
PURPOSE Flow models of intracranial aneurysms (IAs) can be used to test new and existing endovascular treatments with flow modulation devices (FMDs). Additionally, 4D flow magnetic resonance imaging (MRI) offers the ability to measure hemodynamics. This way, the effect of FMDs can be determined noninvasively and compared to patient data. Here, we describe a cost-effective method for producing flow models to test the efficiency of FMDs with 4D flow MRI. METHODS The models were based on human radiological data (internal carotid and basilar arteries) and printed in 3D with stereolithography. The models were printed with three different printing layers (25, 50, and 100 µm thickness). To evaluate the models in vitro, 3D rotational angiography, time-of-flight MRI, and 4D flow MRI were employed. The flow and geometry of one model were compared with in vivo data. Two FMDs (FMD1 and FMD2) were deployed into two different IA models, and the effect on the flow was estimated by 4D flow MRI. RESULTS Models printed with different layer thicknesses exhibited similar flow and little geometric variation. The mean spatial difference between the vessel geometry measured in vivo and in vitro was 0.7 ± 1.1 mm. The main flow features, such as vortices in the IAs, were reproduced. The velocities in the aneurysms were similar in vivo and in vitro (mean velocity magnitude: 5.4 ± 7.6 and 7.7 ± 8.6 cm/s, maximum velocity magnitude: 72.5 and 55.1 cm/s). By deploying FMDs, the mean velocity was reduced in the IAs (from 8.3 ± 10 to 4.3 ± 9.32 cm/s for FMD1 and 9.9 ± 12.1 to 2.1 ± 5.6 cm/s for FMD2). CONCLUSIONS The presented method allows to produce neurovascular models in approx. 15 to 30 h. The resulting models were found to be geometrically accurate, reproducing the main flow patterns, and suitable for implanting FMDs as well as 4D flow MRI.
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Affiliation(s)
- Mariya S Pravdivtseva
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Kiel, Germany.,Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany.,University of Kiel, Kiel, Germany
| | - Eva Peschke
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Kiel, Germany.,Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany.,University of Kiel, Kiel, Germany
| | - Thomas Lindner
- Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany.,Department of Diagnostic and Interventional Neuroradiology, University Hospital Hamburg-Eppendorf, Hamburg, Germany
| | - Fritz Wodarg
- Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany
| | - Johannes Hensler
- Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany
| | - Dominik Gabbert
- Department of Congenital Heart Disease and Pediatric Cardiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany
| | - Inga Voges
- Department of Congenital Heart Disease and Pediatric Cardiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany
| | - Philipp Berg
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany.,Research Campus STIMULATE, University of Magdeburg, Magdeburg, Germany
| | - Alex J Barker
- Department of Radiology, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
| | - Olav Jansen
- Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany
| | - Jan-Bernd Hövener
- Section Biomedical Imaging, Molecular Imaging North Competence Center (MOIN CC), Kiel, Germany.,Department of Radiology and Neuroradiology, University Medical Center Schleswig-Holstein (UKSH), Kiel, Germany.,University of Kiel, Kiel, Germany
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15
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Fortunato RN, Robertson AM, Sang C, Duan X, Maiti S. Effect of macro-calcification on the failure mechanics of intracranial aneurysmal wall tissue. EXPERIMENTAL MECHANICS 2021; 61:5-18. [PMID: 33776069 PMCID: PMC7992055 DOI: 10.1007/s11340-020-00657-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Revised: 07/16/2020] [Accepted: 08/05/2020] [Indexed: 06/12/2023]
Abstract
BACKGROUND Calcification was recently found to be present in the majority of cerebral aneurysms, though how calcification and the presence or absence of co-localized lipid pools affect failure properties is still unknown. OBJECTIVE The primary objective is to quantify the biomechanical effect of a macro-calcification with surrounding Near-Calcification Region (NCR) of varying mechanical properties on tissue failure behavior. METHODS We utilized a structurally informed finite element model to simulate pre-failure and failure behavior of a human cerebral tissue specimen modeled as a composite containing a macro-calcification and surrounding NCR, embedded in a fiber matrix composite. Data from multiple imaging modalities was combined to quantify the collagen organization and calcification geometry. An idealized parametric model utilizing the calibrated model was used to explore the impact of NCR properties on tissue failure. RESULTS Compared to tissue without calcification, peak stress was reduced by 82% and 49% for low modulus (representing lipid pool) and high modulus (simulating increase in calcification size) of the NCR, respectively. Failure process strongly depended on NCR properties with lipid pools blunting the onset of complete failure. When the NCR was calcified, the sample was able to sustain larger overall stress, however the failure process was abrupt with nearly simultaneous failure of the loaded fibers. CONCLUSIONS Failure of calcified vascular tissue is strongly influenced by the ultrastructure in the vicinity of the calcification. Computational modeling of failure in fibrous soft tissues can be used to understand how pathological changes impact the tissue failure process, with potentially important clinical implications.
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Affiliation(s)
- R. N. Fortunato
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh Pittsburgh, USA
| | - A. M. Robertson
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh Pittsburgh, USA
- Department of Bioengineering, University of Pittsburgh Pittsburgh, USA
| | - C. Sang
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh Pittsburgh, USA
| | - X. Duan
- Intelligent Automation Group, PNC Bank, University of Pittsburgh Pittsburgh, USA
| | - S. Maiti
- Department of Mechanical Engineering and Materials Science, University of Pittsburgh Pittsburgh, USA
- Department of Bioengineering, University of Pittsburgh Pittsburgh, USA
- Department of Chemical and Petroleum Engineering, University of Pittsburgh Pittsburgh, USA
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16
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Model Verification and Error Sensitivity of Turbulence-Related Tensor Characteristics in Pulsatile Blood Flow Simulations. FLUIDS 2020. [DOI: 10.3390/fluids6010011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Model verification, validation, and uncertainty quantification are essential procedures to estimate errors within cardiovascular flow modeling, where acceptable confidence levels are needed for clinical reliability. While more turbulent-like studies are frequently observed within the biofluid community, practical modeling guidelines are scarce. Verification procedures determine the agreement between the conceptual model and its numerical solution by comparing for example, discretization and phase-averaging-related errors of specific output parameters. This computational fluid dynamics (CFD) study presents a comprehensive and practical verification approach for pulsatile turbulent-like blood flow predictions by considering the amplitude and shape of the turbulence-related tensor field using anisotropic invariant mapping. These procedures were demonstrated by investigating the Reynolds stress tensor characteristics in a patient-specific aortic coarctation model, focusing on modeling-related errors associated with the spatiotemporal resolution and phase-averaging sampling size. Findings in this work suggest that attention should also be put on reducing phase-averaging related errors, as these could easily outweigh the errors associated with the spatiotemporal resolution when including too few cardiac cycles. Also, substantially more cycles are likely needed than typically reported for these flow regimes to sufficiently converge the phase-instant tensor characteristics. Here, higher degrees of active fluctuating directions, especially of lower amplitudes, appeared to be the most sensitive turbulence characteristics.
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17
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Combining visual analytics and case-based reasoning for rupture risk assessment of intracranial aneurysms. Int J Comput Assist Radiol Surg 2020; 15:1525-1535. [PMID: 32623613 PMCID: PMC7420879 DOI: 10.1007/s11548-020-02217-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Accepted: 06/11/2020] [Indexed: 11/29/2022]
Abstract
Purpose Medical case-based reasoning solves problems by applying experience gained from the outcome of previous treatments of the same kind. Particularly for complex treatment decisions, for example, incidentally found intracranial aneurysms (IAs), it can support the medical expert. IAs bear the risk of rupture and may lead to subarachnoidal hemorrhages. Treatment needs to be considered carefully, since it may entail unnecessary complications for IAs with low rupture risk. With a rupture risk prediction based on previous cases, the treatment decision can be supported. Methods We present an interactive visual exploration tool for the case-based reasoning of IAs. In presence of a new aneurysm of interest, our application provides visual analytics techniques to identify the most similar cases with respect to morphology. The clinical expert can obtain the treatment, including the treatment outcome, for these cases and transfer it to the aneurysm of interest. Our application comprises a heatmap visualization, an adapted scatterplot matrix and fully or partially directed graphs with a circle- or force-directed layout to guide the interactive selection process. To fit the demands of clinical applications, we further integrated an interactive identification of outlier cases as well as an interactive attribute selection for the similarity calculation. A questionnaire evaluation with six trained physicians was used. Result Our application allows for case-based reasoning of IAs based on a reference data set. Three classifiers summarize the rupture state of the most similar cases. Medical experts positively evaluated the application. Conclusion Our case-based reasoning application combined with visual analytic techniques allows for representation of similar IAs to support the clinician. The graphical representation was rated very useful and provides visual information of the similarity of the k most similar cases.
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18
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Závodszky G, Csippa B, Paál G, Szikora I. A novel virtual flow diverter implantation method with realistic deployment mechanics and validated force response. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2020; 36:e3340. [PMID: 32279440 PMCID: PMC7317397 DOI: 10.1002/cnm.3340] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2019] [Revised: 04/01/2020] [Accepted: 04/02/2020] [Indexed: 06/11/2023]
Abstract
Virtual flow diverter deployment techniques underwent significant development during the last couple of years. Each existing technique displays advantageous features, as well as significant limitations. One common drawback is the lack of quantitative validation of the mechanics of the device. In the following work, we present a new spring-mass-based method with validated mechanical responses that combines many of the useful capabilities of previous techniques. The structure of the virtual braids naturally incorporates the axial length changes as a function of the local expansion diameter. The force response of the model was calibrated using the measured response of real FDs. The mechanics of the model allows to replicate the expansion process during deployment, including additional effects such as the push-pull technique that is required for the deployment of braided FDs to achieve full opening and proper wall apposition. Furthermore, it is a computationally highly efficient solution that requires little pre-processing and has a run-time of a few seconds on a general laptop and thus allows for exploratory analyses. The model was applied in a patient-specific geometry, where corresponding accurate control measurements in a 3D-printed model were also available. The analysis shows the effects of FD oversizing and push-pull application on the radial expansion, surface density, and on the wall contact pressure.
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Affiliation(s)
- Gábor Závodszky
- Computational Science Lab, Faculty of Science, Institute for InformaticsUniversity of AmsterdamAmsterdamNetherlands
- Department of Hydrodynamic SystemsBudapest University of Technology and EconomicsBudapestHungary
| | - Benjámin Csippa
- Department of Hydrodynamic SystemsBudapest University of Technology and EconomicsBudapestHungary
| | - György Paál
- Department of Hydrodynamic SystemsBudapest University of Technology and EconomicsBudapestHungary
| | - István Szikora
- Department of NeurointerventionsNational Institute of Clinical NeurosciencesBudapestHungary
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19
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Lipp SN, Niedert EE, Cebull HL, Diorio TC, Ma JL, Rothenberger SM, Stevens Boster KA, Goergen CJ. Computational Hemodynamic Modeling of Arterial Aneurysms: A Mini-Review. Front Physiol 2020; 11:454. [PMID: 32477163 PMCID: PMC7235429 DOI: 10.3389/fphys.2020.00454] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 04/09/2020] [Indexed: 01/02/2023] Open
Abstract
Arterial aneurysms are pathological dilations of blood vessels, which can be of clinical concern due to thrombosis, dissection, or rupture. Aneurysms can form throughout the arterial system, including intracranial, thoracic, abdominal, visceral, peripheral, or coronary arteries. Currently, aneurysm diameter and expansion rates are the most commonly used metrics to assess rupture risk. Surgical or endovascular interventions are clinical treatment options, but are invasive and associated with risk for the patient. For aneurysms in locations where thrombosis is the primary concern, diameter is also used to determine the level of therapeutic anticoagulation, a treatment that increases the possibility of internal bleeding. Since simple diameter is often insufficient to reliably determine rupture and thrombosis risk, computational hemodynamic simulations are being developed to help assess when an intervention is warranted. Created from subject-specific data, computational models have the potential to be used to predict growth, dissection, rupture, and thrombus-formation risk based on hemodynamic parameters, including wall shear stress, oscillatory shear index, residence time, and anomalous blood flow patterns. Generally, endothelial damage and flow stagnation within aneurysms can lead to coagulation, inflammation, and the release of proteases, which alter extracellular matrix composition, increasing risk of rupture. In this review, we highlight recent work that investigates aneurysm geometry, model parameter assumptions, and other specific considerations that influence computational aneurysm simulations. By highlighting modeling validation and verification approaches, we hope to inspire future computational efforts aimed at improving our understanding of aneurysm pathology and treatment risk stratification.
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Affiliation(s)
- Sarah N. Lipp
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Elizabeth E. Niedert
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Hannah L. Cebull
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Tyler C. Diorio
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Jessica L. Ma
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Sean M. Rothenberger
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
| | - Kimberly A. Stevens Boster
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
- School of Mechanical Engineering, Purdue University, West Lafayette, IN, United States
| | - Craig J. Goergen
- Weldon School of Biomedical Engineering, Purdue University, West Lafayette, IN, United States
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20
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Rayz VL, Cohen-Gadol AA. Hemodynamics of Cerebral Aneurysms: Connecting Medical Imaging and Biomechanical Analysis. Annu Rev Biomed Eng 2020; 22:231-256. [PMID: 32212833 DOI: 10.1146/annurev-bioeng-092419-061429] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In the last two decades, numerous studies have conducted patient-specific computations of blood flow dynamics in cerebral aneurysms and reported correlations between various hemodynamic metrics and aneurysmal disease progression or treatment outcomes. Nevertheless, intra-aneurysmal flow analysis has not been adopted in current clinical practice, and hemodynamic factors usually are not considered in clinical decision making. This review presents the state of the art in cerebral aneurysm imaging and image-based modeling, discussing the advantages and limitations of each approach and focusing on the translational value of hemodynamic analysis. Combining imaging and modeling data obtained from different flow modalities can improve the accuracy and fidelity of resulting velocity fields and flow-derived factors that are thought to affect aneurysmal disease progression. It is expected that predictive models utilizing hemodynamic factors in combination with patient medical history and morphological data will outperform current risk scores and treatment guidelines. Possible future directions include novel approaches enabling data assimilation and multimodality analysis of cerebral aneurysm hemodynamics.
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Affiliation(s)
- Vitaliy L Rayz
- Weldon School of Biomedical Engineering and School of Mechanical Engineering, Purdue University, West Lafayette, Indiana 47907, USA;
| | - Aaron A Cohen-Gadol
- Department of Neurosurgery, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA.,Goodman Campbell Brain and Spine, Carmel, Indiana 46032, USA
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21
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Cancelliere NM, Najafi M, Brina O, Bouillot P, Vargas MI, Lovblad KO, Krings T, Pereira VM, Steinman DA. 4D-CT angiography versus 3D-rotational angiography as the imaging modality for computational fluid dynamics of cerebral aneurysms. J Neurointerv Surg 2019; 12:626-630. [DOI: 10.1136/neurintsurg-2019-015389] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 11/06/2019] [Accepted: 11/07/2019] [Indexed: 11/03/2022]
Abstract
Background and purposeComputational fluid dynamics (CFD) can provide valuable information regarding intracranial hemodynamics. Patient-specific models can be segmented from various imaging modalities, which may influence the geometric output and thus hemodynamic results. This study aims to compare CFD results from aneurysm models segmented from three-dimensional rotational angiography (3D-RA) versus novel four-dimensional CT angiography (4D-CTA).MethodsFourteen patients with 16 cerebral aneurysms underwent novel 4D-CTA followed by 3D-RA. Endoluminal geometries were segmented from each modality using an identical workflow, blinded to the other modality, to produce 28 'original' models. Each was then minimally edited a second time to match length of branches, producing 28 additional 'matched' models. CFD simulations were performed using estimated flow rates for 'original' models (representing real-world experience) and patient-specific flow rates from 4D-CTA for 'matched' models (to control for influence of modality alone).ResultsOverall, geometric and hemodynamic results were consistent between models segmented from 3D-RA and 4D-CTA, with correlations improving after matching to control for operator-introduced variability. Despite smaller 4D-CTA parent artery diameters (3.49±0.97 mm vs 3.78±0.92 mm for 3D-RA; p=0.005) and sac volumes (157 (37–750 mm3) vs 173 (53–770 mm3) for 3D-RA; p=0.0002), sac averages of time-averaged wall shear stress (TAWSS), oscillatory shear (OSI), and high frequency fluctuations (measured by spectral power index, SPI) were well correlated between 3D-RA and 4D-CTA 'matched' control models (TAWSS, R2=0.91; OSI, R2=0.79; SPI, R2=0.90).ConclusionsOur study shows that CFD performed using 4D-CTA models produces reliable geometric and hemodynamic information in the intracranial circulation. 4D-CTA may be considered as a follow-up imaging tool for hemodynamic assessment of cerebral aneurysms.
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22
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Niemann A, Weigand S, Hoffmann T, Skalej M, Tulamo R, Preim B, Saalfeld S. Interactive exploration of a 3D intracranial aneurysm wall model extracted from histologic slices. Int J Comput Assist Radiol Surg 2019; 15:99-107. [PMID: 31705419 DOI: 10.1007/s11548-019-02083-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Accepted: 10/18/2019] [Indexed: 01/23/2023]
Abstract
PURPOSE Currently no detailed in vivo imaging of the intracranial vessel wall exists. Ex vivo histologic images can provide information about the intracranial aneurysm (IA) wall composition that is useful for the understanding of IA development and rupture risk. For a 3D analysis, the 2D histologic slices must be incorporated in a 3D model which can be used for a spatial evaluation of the IA's morphology, including analysis of the IA neck. METHODS In 2D images of histologic slices, different wall layers were manually segmented and a 3D model was generated. The nuclei were automatically detected and classified as round or elongated, and a neural network-based wall type classification was performed. The information was combined in a software prototype visualization providing a unique view of the wall characteristics of an IA and allowing interactive exploration. Furthermore, the heterogeneity (as variance of the wall thickness) of the wall was evaluated. RESULT A 3D model correctly representing the histologic data was reconstructed. The visualization integrating wall information was perceived as useful by a medical expert. The classification produces a plausible result. CONCLUSION The usage of histologic images allows to create a 3D model with new information about the aneurysm wall. The model provides information about the wall thickness, its heterogeneity and, when performed on cadaveric samples, includes information about the transition between IA neck and sac.
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Affiliation(s)
- Annika Niemann
- Faculty of Computer Science, Otto-von-Guericke University Magdeburg, Universitätsplatz 2, 39106, Magdeburg, Germany.
| | - Simon Weigand
- Ludwig-Maximilians-Universität Klinikum, Munich, Germany
| | | | | | - Riikka Tulamo
- Helsinki University Hospital, University of Helsinki, Helsinki, Finland
| | - Bernhard Preim
- Faculty of Computer Science, Otto-von-Guericke University Magdeburg, Universitätsplatz 2, 39106, Magdeburg, Germany
| | - Sylvia Saalfeld
- Faculty of Computer Science, Otto-von-Guericke University Magdeburg, Universitätsplatz 2, 39106, Magdeburg, Germany.,Research Campus STIMULATE, Magdeburg, Germany
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23
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Rajabzadeh-Oghaz H, Wang J, Varble N, Sugiyama SI, Shimizu A, Jing L, Liu J, Yang X, Siddiqui AH, Davies JM, Meng H. Novel Models for Identification of the Ruptured Aneurysm in Patients with Subarachnoid Hemorrhage with Multiple Aneurysms. AJNR Am J Neuroradiol 2019; 40:1939-1946. [PMID: 31649161 DOI: 10.3174/ajnr.a6259] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 08/23/2019] [Indexed: 11/07/2022]
Abstract
BACKGROUND AND PURPOSE In patients with SAH with multiple intracranial aneurysms, often the hemorrhage pattern does not indicate the rupture source. Angiographic findings (intracranial aneurysm size and shape) could help but may not be reliable. Our purpose was to test whether existing parameters could identify the ruptured intracranial aneurysm in patients with multiple intracranial aneurysms and whether composite predictive models could improve the identification. MATERIALS AND METHODS We retrospectively collected angiographic and medical records of 93 patients with SAH with at least 2 intracranial aneurysms (total of 206 saccular intracranial aneurysms, 93 ruptured), in which the ruptured intracranial aneurysm was confirmed through surgery or definitive hemorrhage patterns. We calculated 13 morphologic and 10 hemodynamic parameters along with location and type (sidewall/bifurcation) and tested their ability to identify rupture in the 93 patients. To build predictive models, we randomly assigned 70 patients to training and 23 to holdout testing cohorts. Using a linear regression model with a customized cost function and 10-fold cross-validation, we trained 2 rupture identification models: RIMC using all parameters and RIMM excluding hemodynamics. RESULTS The 25 study parameters had vastly different positive predictive values (31%-87%) for identifying rupture, the highest being size ratio at 87%. RIMC incorporated size ratio, undulation index, relative residence time, and type; RIMM had only size ratio, undulation index, and type. During cross-validation, positive predictive values for size ratio, RIMM, and RIMC were 86% ± 4%, 90% ± 4%, and 93% ± 4%, respectively. In testing, size ratio and RIMM had positive predictive values of 85%, while RIMC had 92%. CONCLUSIONS Size ratio was the best individual factor for identifying the ruptured aneurysm; however, RIMC, followed by RIMM, outperformed existing parameters.
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Affiliation(s)
- H Rajabzadeh-Oghaz
- From the Canon Stroke and Vascular Research Center (H.R.-O., N.V., A.H.S., J.M.D., H.M.).,Departments of Mechanical and Aerospace Engineering (H.R.-O., N.V., H.M.)
| | - J Wang
- Biostatistics (J.W.), University at Buffalo, Buffalo, New York
| | - N Varble
- From the Canon Stroke and Vascular Research Center (H.R.-O., N.V., A.H.S., J.M.D., H.M.).,Departments of Mechanical and Aerospace Engineering (H.R.-O., N.V., H.M.)
| | - S-I Sugiyama
- Department of Neuroanesthesia (S.-I.S.), Kohnan Hospital, Sendai, Japan.,Department of Neurosurgery (S.-I.S., A.S.), Tohoku University Graduate School of Medicine, Sendai, Japan
| | - A Shimizu
- Department of Neurosurgery (S.-I.S., A.S.), Tohoku University Graduate School of Medicine, Sendai, Japan
| | - L Jing
- Department of Interventional Neuroradiology (L.J., J.L., X.Y., H.M.), Beijing Neurosurgical Institute, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - J Liu
- Department of Interventional Neuroradiology (L.J., J.L., X.Y., H.M.), Beijing Neurosurgical Institute, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - X Yang
- Department of Interventional Neuroradiology (L.J., J.L., X.Y., H.M.), Beijing Neurosurgical Institute, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
| | - A H Siddiqui
- From the Canon Stroke and Vascular Research Center (H.R.-O., N.V., A.H.S., J.M.D., H.M.).,Departments of Neurosurgery (A.H.S., J.M.D.).,Radiology (A.H.S.), Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, New York.,Jacobs Institute (A.H.S., J.M.D), Buffalo, New York
| | - J M Davies
- From the Canon Stroke and Vascular Research Center (H.R.-O., N.V., A.H.S., J.M.D., H.M.).,Departments of Neurosurgery (A.H.S., J.M.D.).,Bioinformatics (J.M.D.).,Jacobs Institute (A.H.S., J.M.D), Buffalo, New York
| | - H Meng
- From the Canon Stroke and Vascular Research Center (H.R.-O., N.V., A.H.S., J.M.D., H.M.) .,Departments of Mechanical and Aerospace Engineering (H.R.-O., N.V., H.M.).,Department of Interventional Neuroradiology (L.J., J.L., X.Y., H.M.), Beijing Neurosurgical Institute, Beijing Tiantan Hospital, Capital Medical University, Beijing, China
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Voß S, Beuing O, Janiga G, Berg P. Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH)-Phase Ib: Effect of morphology on hemodynamics. PLoS One 2019; 14:e0216813. [PMID: 31100101 PMCID: PMC6524809 DOI: 10.1371/journal.pone.0216813] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Accepted: 04/29/2019] [Indexed: 12/16/2022] Open
Abstract
Background Image-based blood flow simulations have been increasingly applied to investigate intracranial aneurysm (IA) hemodynamics. However, the acceptance among physicians remains limited due to the high variability in the underlying assumptions and quality of results. Methods To evaluate the vessel segmentation as one of the most important sources of error, the international Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH) was announced. 26 research groups from 13 different countries segmented three datasets, which contained five IAs in total. Based on these segmentations, 73 time-dependent blood flow simulations under consistent conditions were carried out. Afterwards, relevant flow and shear parameters (e.g., neck inflow rate, parent vessel flow rate, spatial mean velocity, and wall shear stress) were analyzed both qualitatively and quantitatively. Results Regarding the entire vasculature, the variability of the segmented vessel radius is 0.13 mm, consistent and independent of the local vessel radius. However, the centerline velocity shows increased variability in more distal vessels. Focusing on the aneurysms, clear differences in morphological and hemodynamic parameters were observed. The quantification of the segmentation-induced variability showed approximately a 14% difference among the groups for the parent vessel flow rate. Regarding the mean aneurysmal velocity and the neck inflow rate, a variation of 30% and 46% was observed, respectively. Finally, time-averaged wall shear stresses varied between 28% and 51%, depending on the aneurysm in question. Conclusions MATCH reveals the effect of state-of-the-art segmentation algorithms on subsequent hemodynamic simulations for IA research. The observed variations may lead to an inappropriate interpretation of the simulation results and thus, can lead to inappropriate conclusions by physicians. Therefore, accurate segmentation of the region of interest is necessary to obtain reliable and clinically helpful flow information.
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Affiliation(s)
- Samuel Voß
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany
- Forschungscampus STIMULATE, Magdeburg, Germany
- * E-mail:
| | - Oliver Beuing
- Forschungscampus STIMULATE, Magdeburg, Germany
- Institute of Neuroradiology, University Hospital Magdeburg, Magdeburg, Germany
| | - Gábor Janiga
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany
- Forschungscampus STIMULATE, Magdeburg, Germany
| | - Philipp Berg
- Department of Fluid Dynamics and Technical Flows, University of Magdeburg, Magdeburg, Germany
- Forschungscampus STIMULATE, Magdeburg, Germany
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25
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Shimano K, Serigano S, Ikeda N, Yuchi T, Shiratori S, Nagano H. Understanding of boundary conditions imposed at multiple outlets in computational haemodynamic analysis of cerebral aneurysm. ACTA ACUST UNITED AC 2019. [DOI: 10.17106/jbr.33.32] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Kenjiro Shimano
- Department of Mechanical Systems Engineering, Faculty of Engineering, Tokyo City University
| | - Shota Serigano
- Graduate School of Integrative Science and Engineering, Tokyo City University
| | - Naoki Ikeda
- Department of Mechanical Systems Engineering, Faculty of Engineering, Tokyo City University
| | - Tomoki Yuchi
- Department of Mechanical Systems Engineering, Faculty of Engineering, Tokyo City University
| | - Suguru Shiratori
- Department of Mechanical Systems Engineering, Faculty of Engineering, Tokyo City University
| | - Hideaki Nagano
- Department of Mechanical Systems Engineering, Faculty of Engineering, Tokyo City University
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