1
|
Khanmohammadi Khorrami MM, Azimi N, Koopaie M, Mohammadi M, Manifar S, Khanmohammadi Khorrami M. Attenuated Total Reflection-Fourier Transform Infrared (ATR-FTIR) Spectroscopy Analysis of Saliva as a Diagnostic Specimen for Rapid Classification of Oral Squamous Cell Carcinoma Using Chemometrics Methods. Cancer Invest 2024; 42:815-826. [PMID: 39354719 DOI: 10.1080/07357907.2024.2403086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 08/04/2024] [Accepted: 09/08/2024] [Indexed: 10/03/2024]
Abstract
BACKGROUND & AIM Recent advancements in analytical techniques have highlighted the potential of Attenuated Total Reflection-Fourier Transform Infrared (ATR-FTIR) spectroscopy as a quick, cost-effective, non-invasive, and efficient tool for cancer diagnosis. This study aims to evaluate the effectiveness of ATR-FTIR spectroscopy in combination with supervised machine learning classification models for diagnosing OSCC using saliva samples. METHODS & MATERIALS Eighty unstimulated whole saliva samples from OSCC patients and healthy controls were collected. The ATR-FTIR spectroscopy was performed and spectral data were used to classify healthy and OSCC groups. The data were analyzed using machine learning classification methods such as Partial Least Squares-Discriminant Analysis (PLS-DA) and Support Vector Machine Classification (SVM-C). The classification performance of the models was evaluated by computing sensitivity, specificity, precision, and accuracy. RESULTS The samples were classified into two classes based on their spectral data. The obtained results demonstrate a high level of accuracy in the prediction sets of the PLS-DA and SVM-C models, with accuracy values of 0.960 and 0.962, respectively. The OSCC group sensitivity values for both PLS-DA and SVM-C models was 1.00, respectively. CONCLUSION The study indicates that ATR-FTIR spectroscopy, combined with chemometrics, is a potential method for the non-invasive diagnosis of OSCC using saliva samples. This method achieved high accuracy and the findings of this study suggest that ATR-FTIR spectroscopy could be further developed for clinical applications in OSCC diagnosis.
Collapse
Affiliation(s)
| | - Nozhan Azimi
- Student Research Committee, Dental Branch, Islamic Azad University of Medical Sciences, Tehran, Iran
| | - Maryam Koopaie
- Department of Oral Medicine, School of Dentistry, Tehran University of Medical Sciences, Tehran, Iran
| | - Mahsa Mohammadi
- Department of Chemistry, Faculty of Science, Imam Khomeini International University, Qazvin, Iran
| | - Soheila Manifar
- Department of Oral Medicine, School of Dentistry, Tehran University of Medical Sciences, Cancer Institute of Tehran, Imam Khomeini Hospital Complex, Tehran, Iran
| | | |
Collapse
|
2
|
Huang S, Deng H, Wei X, Zhang J. Progress in application of terahertz time-domain spectroscopy for pharmaceutical analyses. Front Bioeng Biotechnol 2023; 11:1219042. [PMID: 37533693 PMCID: PMC10393043 DOI: 10.3389/fbioe.2023.1219042] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Accepted: 06/12/2023] [Indexed: 08/04/2023] Open
Abstract
Terahertz time-domain spectroscopy is an analytical method using terahertz time-domain pulses to study the physical and chemical properties of substances. It has strong potential for application in pharmaceutical analyses as an original non-destructive, efficient and convenient technology for spectral detection. This review briefly introduces the working principle of terahertz time-domain spectroscopy technology, focuses on the research achievements of this technology in analyses of chemical drugs, traditional Chinese medicine and biological drugs in the past decade. We also reveal the scientific feasibility of practical application of terahertz time-domain spectroscopy for pharmaceutical detection. Finally, we discuss the problems in practical application of terahertz time-domain spectroscopy technology, and the prospect of further development of this technology in pharmaceutical analyses. We hope that this review can provide a reference for application of terahertz time-domain spectroscopy technology in pharmaceutical analyses in the future.
Collapse
Affiliation(s)
- Shuteng Huang
- School of Pharmacy, Binzhou Medical University, Yantai, China
| | - Hanxiu Deng
- School of Pharmacy, Binzhou Medical University, Yantai, China
| | - Xia Wei
- Shandong Institute for Food and Drug Control, Jinan, China
| | - Jiayu Zhang
- School of Pharmacy, Binzhou Medical University, Yantai, China
| |
Collapse
|
3
|
Pu H, Yu J, Sun DW, Wei Q, Li Q. Distinguishing pericarpium citri reticulatae of different origins using terahertz time-domain spectroscopy combined with convolutional neural networks. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 299:122771. [PMID: 37244024 DOI: 10.1016/j.saa.2023.122771] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 04/17/2023] [Accepted: 04/19/2023] [Indexed: 05/29/2023]
Abstract
The geographical indication of pericarpium citri reticulatae (PCR) is very important in grading the quality and price of PCRs. Therefore, terahertz time-domain spectroscopy (THz-TDS) technology combined with convolutional neural networks (CNN) was proposed to distinguish PCRs of different origins without damage in this study. The one-dimensional CNN (1D-CNN) model with an accuracy of 82.99% based on spectral data processed with SNV was established. The two-dimensional image features were transformed from unprocessed spectral data using the gramian angular field (GAF), the Markov transition field (MTF) and the recurrence plot (RP), which were used to build a two-dimensional CNN (2D-CNN) model with an accuracy of 78.33%. Further, the CNN models with different fusion methods were developed for fusing spectra data and image data. In addition, the adding spectra and images based on the CNN (Add-CNN) model with an accuracy of 86.17% performed better. Eventually, the Add-CNN model based on ten frequencies extracted using permutation importance (PI) achieved the identification of PCRs from different origins. Overall, the current study would provide a new method for identifying PCRs of different origins, which was expected to be used for the traceability of PCRs products.
Collapse
Affiliation(s)
- Hongbin Pu
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510641, China; Academy of Contemporary Food Engineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China; Engineering and Technological Research Centre of Guangdong Province on Intelligent Sensing and Process Control of Cold Chain Foods, & Guangdong Province Engineering Laboratory for Intelligent Cold Chain Logistics Equipment for Agricultural Products, Guangzhou Higher Education Mega Centre, Guangzhou 510006, China
| | - Jingxiao Yu
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510641, China; Academy of Contemporary Food Engineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China; Engineering and Technological Research Centre of Guangdong Province on Intelligent Sensing and Process Control of Cold Chain Foods, & Guangdong Province Engineering Laboratory for Intelligent Cold Chain Logistics Equipment for Agricultural Products, Guangzhou Higher Education Mega Centre, Guangzhou 510006, China
| | - Da-Wen Sun
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510641, China; Academy of Contemporary Food Engineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China; Engineering and Technological Research Centre of Guangdong Province on Intelligent Sensing and Process Control of Cold Chain Foods, & Guangdong Province Engineering Laboratory for Intelligent Cold Chain Logistics Equipment for Agricultural Products, Guangzhou Higher Education Mega Centre, Guangzhou 510006, China; Food Refrigeration and Computerized Food Technology (FRCFT), Agriculture and Food Science Centre, University College Dublin, National University of Ireland, Belfield, Dublin 4, Ireland.
| | - Qingyi Wei
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510641, China; Academy of Contemporary Food Engineering, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou 510006, China; Engineering and Technological Research Centre of Guangdong Province on Intelligent Sensing and Process Control of Cold Chain Foods, & Guangdong Province Engineering Laboratory for Intelligent Cold Chain Logistics Equipment for Agricultural Products, Guangzhou Higher Education Mega Centre, Guangzhou 510006, China
| | - Qian Li
- Shenzhen Institute of Terahertz Technology and Innovation, Shenzhen, Guangdong 518102, China
| |
Collapse
|
4
|
Li B, Han Z, Wang Q, Yang A, Liu Y. Detection of bruised loquats based on reflectance, absorbance and Kubelka–Munk spectra. JOURNAL OF FOOD MEASUREMENT AND CHARACTERIZATION 2022. [DOI: 10.1007/s11694-022-01717-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
|
5
|
Bin L, Zhao-yang H, Hui-zhou C, A-kun Y, Ai-guo OY. Identification of different parts of Panax notoginseng based on terahertz spectroscopy. J Anal Sci Technol 2022. [DOI: 10.1186/s40543-022-00328-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
AbstractIn this paper, the combined terahertz time-domain spectroscopy (THz-TDS) and chemometrics method is proposed to identify four different parts of Panax notoginseng rapidly and nondestructively. The research objects of the taproot, scissor, rib, and hairy root of P. notoginseng are taken. The refractive index, absorption coefficient, time-domain, and frequency-domain spectra of the samples are analyzed. It is found that the terahertz spectra of different parts of P. notoginseng are significantly different, so the absorption coefficient of samples is selected to establish models. Firstly, the baseline correction, multiple scattering correction, and normalization algorithms are used to preprocess the absorption coefficient in 0.5–2.0 THz to remove noise. Then, the Kennard–Stone (KS) algorithm is used to divide the model set and the prediction set at the ratio of 3:1, and the successive projection algorithm (SPA) is used to select the characteristic frequency points of the samples. Finally, the chosen characteristic variables are input into the support vector machine (SVM) and linear discriminant analysis (LDA) algorithm to establish the qualitative analysis models, respectively. In the SPA-SVM models, the performance of the SPA-SVM model under the linear kernel function by baseline is best, the accuracy of the training set of it is 99.50%, and the accuracy of the test set of it is 99.25%. In the SPA-LDA models, the performance of the SPA-LDA model by baseline is best, and the accuracy of the training set of it is 100%, and the accuracy of the test set of it is 100%. And the value of cumulative variance contribution is proposed to assess whether the variable is good or bad to model. The results show that the combined THz-TDS and chemometrics method can be used to realize rapid, accurate, and nondestructive identification of different parts of P. notoginseng.
Collapse
|
6
|
Li F, Zhang J, Wang Y. Vibrational Spectroscopy Combined with Chemometrics in Authentication of Functional Foods. Crit Rev Anal Chem 2022; 54:333-354. [PMID: 35533108 DOI: 10.1080/10408347.2022.2073433] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Many foods have both edible and medical importance and are appreciated as functional foods, preventing diseases. However, due to unscrupulous vendors and imperfect market supervision mechanisms, curative foods are prone to adulteration or some other events that harm the interests of consumers. However, traditional analytical methods are unsuitable and expensive for a broad and complex application. Therefore, people urgently need a fast, efficient, and accurate detection method to protect self-interests. Recently, the study of target samples by vibration spectrum shows strong qualitative and quantitative ability. The model established by platform technology combined with the stoichiometric analysis method can obtain better parameters, which it has good robustness and can detect functional food efficiently, quickly and nondestructive. The review compared and prospect five different vibrational spectroscopic techniques (near-infrared, Fourier transform infrared, Raman, hyperspectral imaging spectroscopy and Terahertz spectroscopy). In order to better solve some of the actual situations faced by certification, we explore and through relevant research and investigation to appropriately highlight the applicability and importance of technology combined with chemometrics in functional food authentication. There are four categories of authentication discussed: functional food authenticated in source, processing method, fraud and ingredient ratio. This paper provides an innovative process for the authentication of functional food, which has a meaningful reference value for future review or scientific research of relevant departments.
Collapse
Affiliation(s)
- Fengjiao Li
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
- School of Agriculture, Yunnan University, Kunming, China
| | - Jinyu Zhang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| | - Yuanzhong Wang
- Medicinal Plants Research Institute, Yunnan Academy of Agricultural Sciences, Kunming, China
| |
Collapse
|