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Bae SH, Lee MH, Lee JH, Yu Y, Lee J, Kim TH. The Genome of the Korean Island-Originated Perilla citriodora 'Jeju17' Sheds Light on Its Environmental Adaptation and Fatty Acid and Lipid Production Pathways. Genes (Basel) 2023; 14:1898. [PMID: 37895247 PMCID: PMC10606934 DOI: 10.3390/genes14101898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 09/27/2023] [Accepted: 09/28/2023] [Indexed: 10/29/2023] Open
Abstract
Perilla is a key component of Korean food. It contains several plant-specialized metabolites that provide medical benefits. In response to an increased interest in healthy supplement food from the public, people are focusing on the properties of Perilla. Nevertheless, unlike rice and soybeans, there are few studies based on molecular genetics on Perilla, so it is difficult to systematically study the molecular breed. The wild Perilla, Perilla citriodora 'Jeju17', was identified a decade ago on the Korean island of Jeju. Using short-reads, long-reads, and Hi-C, a chromosome-scale genome spanning 676 Mbp, with high contiguity, was assembled. Aligning the 'Jeju17' genome to the 'PC002' Chinese species revealed significant collinearity with respect to the total length. A total of 31,769 coding sequences were predicted, among which 3331 were 'Jeju17'-specific. Gene enrichment of the species-specific gene repertoire highlighted environment adaptation, fatty acid metabolism, and plant-specialized metabolite biosynthesis. Using a homology-based approach, genes involved in fatty acid and lipid triacylglycerol biosynthesis were identified. A total of 22 fatty acid desaturases were found and comprehensively characterized. Expression of the FAD genes in 'Jeju17' was examined at the seed level, and hormone signaling factors were identified. The results showed that the expression of FAD genes in 'Jeju17' at the seed level was high 25 days after flowering, and their responses of hormones and stress were mainly associated with hormone signal transduction and abiotic stress via cis-elements patterns. This study presents a chromosome-level genome assembly of P. citriodora 'Jeju17', the first wild Perilla to be sequenced from the Korean island of Jeju. The analyses provided can be useful in designing ALA-enhanced Perilla genotypes in the future.
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Affiliation(s)
- Seon-Hwa Bae
- Genomics Division, Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea;
| | - Myoung Hee Lee
- Upland Crop Breeding Research Division, Department of Southern Area Crop Science, Rural Development Administration (RDA), Miryang 50424, Republic of Korea;
| | - Jeong-Hee Lee
- SEEDERS Inc., 118, Jungang-ro, Jung-gu, Daejeon 34912, Republic of Korea;
| | - Yeisoo Yu
- DNACARE Co., Ltd., 48, Teheran-ro 25-gil, Gangnam-gu, Seoul 06126, Republic of Korea;
| | - Jundae Lee
- Department of Horticulture, College of Agriculture and Life Sciences, Jeonbuk National University, Jeonju 54896, Republic of Korea
| | - Tae-Ho Kim
- Genomics Division, Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju 54874, Republic of Korea;
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Lee KY, Kim AN, Kim HJ, Kerr WL, Choi SG. Effect of oil pressing and packaging under oxygen-free conditions on yield, oxidative stability, antioxidant activity, and physicochemical characteristics of perilla oil. Lebensm Wiss Technol 2023. [DOI: 10.1016/j.lwt.2023.114647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
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3
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Chemical characterization of pomegranate and alfalfa seed oils obtained by a two-step sequential extraction procedure of expeller and supercritical CO2 technologies. J Food Compost Anal 2022. [DOI: 10.1016/j.jfca.2022.105040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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Zhang X, Feng S, Yang W, Shen Q, Chen S. A Method for Identifying Germplasm that Exhibit Multiple Mutations in the Fatty Acid Synthetic Pathway of
Perilla frutescens
. J AM OIL CHEM SOC 2020. [DOI: 10.1002/aocs.12417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Xueting Zhang
- Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica China Academy of Chinese Medical Sciences No. 16, Nanxiaojie, Dongzhimennei Beijing 100700 China
| | - Shuhan Feng
- Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica China Academy of Chinese Medical Sciences No. 16, Nanxiaojie, Dongzhimennei Beijing 100700 China
| | - Wei Yang
- Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica China Academy of Chinese Medical Sciences No. 16, Nanxiaojie, Dongzhimennei Beijing 100700 China
| | - Qi Shen
- Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica China Academy of Chinese Medical Sciences No. 16, Nanxiaojie, Dongzhimennei Beijing 100700 China
| | - Sha Chen
- Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine, Institute of Chinese Materia Medica China Academy of Chinese Medical Sciences No. 16, Nanxiaojie, Dongzhimennei Beijing 100700 China
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Lee K, Gul K, Kim A, Rahman MS, Lee MH, Kim JI, Kwak D, Shin E, Kim H, Kerr WL, Choi S. Impact of supercritical carbon dioxide turmeric extract on the oxidative stability of perilla oil. Int J Food Sci Technol 2020. [DOI: 10.1111/ijfs.14261] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kyo‐Yeon Lee
- Division of Applied Life Science (BK21 Plus) Gyeongsang National University Jinju 52828 South Korea
| | - Khalid Gul
- Department of Food Science and Technology (Institute of Agriculture and Life Sciences) Gyeongsang National University Jinju 52828 South Korea
| | - Ah‐Na Kim
- Division of Applied Life Science (BK21 Plus) Gyeongsang National University Jinju 52828 South Korea
| | - M. Shafiur Rahman
- Division of Applied Life Science (BK21 Plus) Gyeongsang National University Jinju 52828 South Korea
- Department of Food Engineering and Technology State University of Bangladesh Dhaka 1205 Bangladesh
| | - Myoung Hee Lee
- Department of Southern Area Crop Science NICS, RDA Miryang 50424 Korea
| | - Jung In Kim
- Department of Southern Area Crop Science NICS, RDA Miryang 50424 Korea
| | - Doyeon Kwak
- Department of Southern Area Crop Science NICS, RDA Miryang 50424 Korea
| | - Eui‐Cheol Shin
- Department of Food Science Gyeongnam National University of Science and Technology Jinju 52725 Korea
| | - Hyun‐Jin Kim
- Division of Applied Life Science (BK21 Plus) Gyeongsang National University Jinju 52828 South Korea
- Department of Food Science and Technology (Institute of Agriculture and Life Sciences) Gyeongsang National University Jinju 52828 South Korea
| | - William L. Kerr
- Department of Food Science and Technology University of Georgia 100 Cedar Street Athens GA 30602‐2610 USA
| | - Sung‐Gil Choi
- Division of Applied Life Science (BK21 Plus) Gyeongsang National University Jinju 52828 South Korea
- Department of Food Science and Technology (Institute of Agriculture and Life Sciences) Gyeongsang National University Jinju 52828 South Korea
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Han B, Yu B, Liu L, Xiu Y, Wang H. Experimental investigation of the strong stability, antibacterial and anti-inflammatory effect and high bioabsorbability of a perilla oil or linseed oil nanoemulsion system. RSC Adv 2019; 9:25739-25749. [PMID: 35530056 PMCID: PMC9070085 DOI: 10.1039/c9ra03595h] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Accepted: 08/12/2019] [Indexed: 12/03/2022] Open
Abstract
Perilla oil (PO) and linseed oil (LO) are very rich in nutrients and have great potential market value. Using the Cremophor RH40-Span80 preparation system to make a perilla oil nanoemulsion (PON) or linseed oil nanoemulsion (LON) can improve the bioavailability and stability of these oils. The effect of different reaction conditions on the stability of the emulsion was investigated. The results showed that the PON and LON have good stability at pH ≥ 7, different storage temperatures (4 °C, 25 °C, 37 °C and 55 °C) and different NaCl concentrations (0, 2, 4, 6, 8 M). Meanwhile, it was found that the content of the lipid peroxidation product malondialdehyde (MDA) in the nanoemulsion did not change significantly over 7 days, further demonstrating the stability of the nanoemulsion. Through anti-inflammatory and antibacterial tests, it was found that the PON and LON have an effective inhibitory effect on inflammation; moreover, the PON inhibits the growth of Escherichia coli, Salmonella enteritidis and Pseudomonas tolaasii, and the LON has an inhibitory effect on Staphylococcus aureus and Pseudomonas tolaasii (inhibition zone > 10 mm). In addition, we found that there were no pathological differences in the heart, liver, spleen and kidney of Kunming mice between the PO and PON groups and the LO and LON groups. Furthermore, after intraperitoneal injection of P 407 into mice, the comparison between PON and PO and between LON and LO showed that the blood lipid levels of the mice in the PON and LON treatment groups increased, indicating that the absorption capacity of the small intestine of the mice for the PON and LON was enhanced. Therefore, the preparation of the PON and LON has good development prospects and opens up opportunities in the development of the food industry. Strong stability, antibacterial, anti-inflammatory effect and high bioabsorbability of a perilla oil or linseed oil nanoemulsion system.![]()
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Affiliation(s)
- Baoqing Han
- College of Food Sciences and Engineering
- Jilin University
- Changchun 130062
- China
| | - Biao Yu
- Jilin Provincial Key Laboratory of Animal Embryo Engineering
- College of Animal Sciences
- Jilin University
- Changchun 130062
- China
| | - Lu Liu
- College of Food Sciences and Engineering
- Jilin University
- Changchun 130062
- China
| | - Yi Xiu
- College of Food Sciences and Engineering
- Jilin University
- Changchun 130062
- China
| | - Hongsu Wang
- College of Food Sciences and Engineering
- Jilin University
- Changchun 130062
- China
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Du Y, Yin LJ, Han QH, Zhao D, Liu HJ. Effect of NaCas/Tween 80 ratios and environmental stresses on the physical stability of perilla oil-in-water emulsions. J FOOD PROCESS PRES 2018. [DOI: 10.1111/jfpp.13568] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Yan Du
- Beijing Advanced Innovation Center for Food Nutrition and Human Health; Beijing 100083 People's Republic of China
- College of Food Science and Nutritional Engineering; China Agricultural University; Beijing 100083 People's Republic of China
| | - Li-Jun Yin
- College of Food Science and Nutritional Engineering; China Agricultural University; Beijing 100083 People's Republic of China
| | - Qing-Hua Han
- Chinese Academy of Agricultural Mechanization Sciences; Beijing 100000 People's Republic of China
| | - Dan Zhao
- Chinese Academy of Agricultural Mechanization Sciences; Beijing 100000 People's Republic of China
| | - Hai-Jie Liu
- Beijing Advanced Innovation Center for Food Nutrition and Human Health; Beijing 100083 People's Republic of China
- College of Food Science and Nutritional Engineering; China Agricultural University; Beijing 100083 People's Republic of China
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Kamila PK, Ray A, Sahoo A, Nayak S, Mohapatra PK, Panda PC. Physicochemical characteristics of the Lasiococca comberi Haines seeds. Nat Prod Res 2017; 32:2352-2355. [DOI: 10.1080/14786419.2017.1408091] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Pradeep Kumar Kamila
- Taxonomy & Conservation Division, Regional Plant Resource Centre, Bhubaneswar, India
| | - Asit Ray
- Centre of Biotechnology, Siksha O Anusandhan University, Ghatikia, Bhubaneswar, India
| | - Ambika Sahoo
- Centre of Biotechnology, Siksha O Anusandhan University, Ghatikia, Bhubaneswar, India
| | - Sanghamitra Nayak
- Centre of Biotechnology, Siksha O Anusandhan University, Ghatikia, Bhubaneswar, India
| | | | - Pratap Chandra Panda
- Taxonomy & Conservation Division, Regional Plant Resource Centre, Bhubaneswar, India
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Li Y, Zhang Y, Sui X, Zhang Y, Feng H, Jiang L. Ultrasound-assisted aqueous enzymatic extraction of oil from perilla (Perilla frutescensL.) seeds. CYTA - JOURNAL OF FOOD 2013. [DOI: 10.1080/19476337.2013.782070] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Zhao T, Hong SI, Lee J, Lee JS, Kim IH. Impact of Roasting on the Chemical Composition and Oxidative Stability of Perilla Oil. J Food Sci 2012; 77:C1273-8. [DOI: 10.1111/j.1750-3841.2012.02981.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Noh S, Yoon SH. Stereospecific Positional Distribution of Fatty Acids of Camellia (Camellia japonica L.) Seed Oil. J Food Sci 2012; 77:C1055-7. [DOI: 10.1111/j.1750-3841.2012.02854.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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