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Keshri J, Smith KM, Svendsen MK, Keillor HR, Moss ML, Jordan HJ, Larkin AM, Garrish JK, Line JE, Ball PN, Oakley BB, Seal BS. Phenotypic Characterization and Draft Genome Sequence Analyses of Two Novel Endospore-Forming Sporosarcina spp. Isolated from Canada Goose ( Branta canadensis) Feces. Microorganisms 2023; 12:70. [PMID: 38257897 PMCID: PMC10818898 DOI: 10.3390/microorganisms12010070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2023] [Revised: 12/15/2023] [Accepted: 12/22/2023] [Indexed: 01/24/2024] Open
Abstract
In an attempt to isolate new probiotic bacteria, two Gram-variable, spore-forming, rod-shaped aerobic bacteria designated as strain A4 and A15 were isolated from the feces of Canada geese (Branta canadensis). Strain A4 was able to grow in high salt levels and exhibited lipase activity, while A15 did not propagate under these conditions. Both were positive for starch hydrolysis, and they inhibited the growth of Staphylococcus aureus. The strains of the 16S rRNA sequence shared only 94% similarity to previously identified Sporosarcina spp. The ANI (78.08%) and AAI (82.35%) between the two strains were less than the species threshold. Searches for the most similar genomes using the Mash/Minhash algorithm showed the nearest genome to strain A4 and A15 as Sporosarcina sp. P13 (distance of 21%) and S. newyorkensis (distance of 17%), respectively. Sporosarcina spp. strains A4 and A15 contain urease genes, and a fibronectin-binding protein gene indicates that these bacteria may bind to eukaryotic cells in host gastrointestinal tracts. Phenotypic and phylogenetic data, along with low dDDH, ANI, and AAI values for strains A4 and A15, indicate these bacteria are two novel isolates of the Sporosarcina genus: Sporosarcina sp. A4 sp. nov., type strain as Sporosarcina cascadiensis and Sporosarcina sp. A15 sp. nov., type strain Sporosarcina obsidiansis.
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Affiliation(s)
- Jitendra Keshri
- College of Veterinary Medicine, Western University of Health Sciences, Pomona, CA 91766, USA;
| | - Kristina M. Smith
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Molly K. Svendsen
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Haley R. Keillor
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Madeline L. Moss
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Haley J. Jordan
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Abigail M. Larkin
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Johnna K. Garrish
- Poultry Microbiological Safety & Processing Research Unit, U.S. National Poultry Research Center, Athens, GA 30605, USA; (J.K.G.); (J.E.L.)
| | - John Eric Line
- Poultry Microbiological Safety & Processing Research Unit, U.S. National Poultry Research Center, Athens, GA 30605, USA; (J.K.G.); (J.E.L.)
| | - Patrick N. Ball
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
| | - Brian B. Oakley
- College of Veterinary Medicine, Western University of Health Sciences, Pomona, CA 91766, USA;
| | - Bruce S. Seal
- Biology Program, Oregon State University Cascades, Bend, OR 97702, USA; (K.M.S.); (M.K.S.); (H.R.K.); (M.L.M.); (H.J.J.); (A.M.L.); (P.N.B.)
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Singh A, Singh A. Microbial Degradation and Value Addition to Food and Agriculture Waste. Curr Microbiol 2022; 79:119. [PMID: 35235053 DOI: 10.1007/s00284-022-02809-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/11/2022] [Indexed: 11/26/2022]
Abstract
Food and agriculture waste (FAW) is a serious problem that is increasing globally. Wastage of raw materials or processed food due to various man-made activities is huge. This solid waste which is either being discarded by humans in their daily activities or an obligatory residue of agricultural processes is severely harming our environment. This becomes a major concern in densely populated agri-based countries, like India, China, and the USA. It is strongly debated that such issues need to be addressed very emphatically for sustainable development of ourselves and our surroundings. Lots of economic benefits can be obtained by reducing the food loss or converting the agricultural waste into useful products and these advantages can be in the form of better food security, reduced production cost, biodegradable products, and environment sustainability with cleaner options to reduce the ever-increasing global problem of garbage and waste management. Proper management of these substances can considerably lessen the risks to individual health. Reprocessing of waste is of great advantage as FAW has many components which may form an available resource to be converted to another useful product. Several approaches have been made for converting food waste into fruitful products. Bioconversion being the most prominent approach is helping us in a major way to overcome the problem of FAW. Microorganisms are at the forefront of this and have been extensively explored for their bioconversion potential. The present work focuses on the current state of food and agriculture waste and their valorization approaches. Through extensive literature review, we have highlighted and discussed the potential of microorganisms in bioconversion of waste, major types of functional ingredients derived during the process, and potential constraints in implementation of such state-of-the-art technology at industrial scale. The review also gives a brief technical overview of the conversion of waste products into energy generation and biofuels.
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Affiliation(s)
- Aditi Singh
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Gomti Nagar Extension, Near Malhaur Railway Station, Lucknow, 226028, India.
| | - Avishka Singh
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Lucknow Campus, Gomti Nagar Extension, Near Malhaur Railway Station, Lucknow, 226028, India
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