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Spectral features of adenosine triphosphate solutions with calix[4]arene C-107. APPLIED NANOSCIENCE 2022. [DOI: 10.1007/s13204-022-02623-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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In silico Study of Conjugated Nitrogen Heterocycles Affinity in their Biological Complexes. Chem Heterocycl Compd (N Y) 2022. [DOI: 10.1007/s10593-022-03107-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2022]
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Obernikhina NV, Kobzar OL, Kachaeva MV, Kachkovsky OD, Brovarets VS. In silico and in vitro Estimation of Structure and Biological Affinity of 1,3-
Oxazoles: Fragment-to-fragment Approach. Curr Comput Aided Drug Des 2022; 18:95-109. [DOI: 10.2174/1573409918666220404100022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 02/02/2022] [Accepted: 02/18/2022] [Indexed: 11/22/2022]
Abstract
Background:
The fragment-to-fragment approach for the estimation of the biological af-finity of the pharmacophores with biologically active molecules has been proposed. It is the next step in the elaboration of molecular docking and using the quantum-chemical methods for the complex modeling of pharmacophores with biomolecule fragments.
Methods:
The parameter 0 was used to estimate the contribution of -electron interactions in bio-logical affinity. It is directly related to the position of the frontier levels and reflects the donor-accep-tor properties of the pharmacophores and stabilization energy of the [Pharm꞉BioM] complex.
Results:
By using quantum-chemical calculations, it was found that the stacking interaction of oxa-zoles with phenylalanine is 7-11 kcal/mol, while the energy of hydrogen bonding of oxazoles with the amino group of lysine is 5-9 kcal/mol. The fragment-to-fragment approach can be applied for the investigation of the dependence of biological affinity on the electronic structure of pharmacophores.
Conclusion:
The founded quantum-chemical regularities are confirmed with the structure-activity relationships of substituted oxazoles.
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Affiliation(s)
- Nataliya V. Obernikhina
- Department of Bioorganic and Biological Chemistry, O.O. Bogomolets National Medical University, 13 T. Shevchenko
boul., 01601, Kyiv, Ukraine
| | - Olexandr L. Kobzar
- Department of Chemistry of Bioactive Nitrogen-Containing Heterocyclic Bases, V.P. Kukhar
Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, 1 Murmanskaya Str., 02094, Kyiv, Ukraine
| | - Marina V. Kachaeva
- Department of Chemistry of Bioactive Nitrogen-Containing Heterocyclic Bases, V.P. Kukhar
Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, 1 Murmanskaya Str., 02094, Kyiv, Ukraine
| | - Oleksiy D. Kachkovsky
- Department of Chemistry of Bioactive Nitrogen-Containing Heterocyclic Bases, V.P. Kukhar
Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, 1 Murmanskaya Str., 02094, Kyiv, Ukraine
| | - Volodymyr S. Brovarets
- Department of Chemistry of Bioactive Nitrogen-Containing Heterocyclic Bases, V.P. Kukhar
Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, 1 Murmanskaya Str., 02094, Kyiv, Ukraine
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