Optimisation of culture composition for glyphosate degradation by Burkholderia vietnamiensis strain AQ5-12

Utilizing actinobacteria for glyphosate biodegradation: innovative solutions for sustainable agricultural soil remediation

Glyphosate is one of the most widely used herbicides globally, yet its extensive application has raised significant ecological concerns. The objective of this study is to evaluate the ability of actinobacteria to degrade glyphosate under various environmental conditions. Four strains of actinobacteria were selected for their ability to thrive in a minimal medium containing 50 mg/L of glyphosate. The optimization of glyphosate biodegradation was assessed through a colorimetric method, which showed that the highest biodegradation rate occurred at a pH of 7.2, a temperature of 30 °C and an inoculum volume of 4%. The isolates were identified as follows: Streptomyces sp. strain SPA2 (accession number pp413753), Streptomyces rochei. strain IT (accession number pp413751), Streptomyces variabilis. strain Herb (accession number pp413750), and Streptomyces griseoincarnatus. strain SC (accession number PP413754). Analysis of total organic carbon reduction demonstrated that the strains SPA2, IT, Herb, and SC achieved reductions of 56.11%, 47.96%, 82.06%, and 67.12%, respectively. Furthermore, ATR-FTIR spectroscopy indicated alterations in the chemical structure of glyphosate post-biodegradation. These findings underscore the significant potential of the identified actinobacterial strains as viable agents for the bioremediation of glyphosate-contaminated agricultural soils.

Manganese Removal Using Functionalised Thiosalicylate-Based Ionic Liquid: Water Filtration System Application

Aiming at the generation of new functionalised thiosalicylate-based ionic liquids, a polymeric hydrogel consisting of 1-hexylimidazole propionitrile thiosalicylate [HIMP][TS], with a solid biomaterial support based on polyvinyl alcohol (PVA)-alginate beads, was produced. This study aimed to develop a treatment method for removing manganese (Mn) heavy metal from industrial wastewater, which is known to be toxic and harmful towards the environment and human health. The method utilised an adsorption-based approach with an alginate adsorbent that incorporated a functionalised thiosalicylate-based ionic liquid. The synthesised smooth round beads of PVA-alginate-[HIMP][TS] adsorbent were structurally characterised using Fourier transform infrared spectroscopy (FTIR) and field emission scanning electron microscopy (FESEM). The Mn concentration and removal efficiency were evaluated using atomic absorption spectroscopy (AAS). Three important parameters were evaluated: pH, adsorbent dosage, and contact time. During optimisation using the interactive factor design of experiments through the Box-Behnken model, the results showed that the system achieved a maximum Mn removal efficiency of 98.91% at an initial pH of 7.15, with a contact time of 60 min, using a bead dosage of 38.26 g/L. The beads were also tested in an available water filtration prototype system to illustrate their industrial application, and the performance showed a removal efficiency of 99.14% with 0 NTU total suspended solid (TSS) and 0.13 mg/L turbidity analysis. The recyclability of PVA-alginate-[HIMP][TS] beads using 0.5 M HCl resulted in four cycles with constant 99% Mn removal. The adsorption capacity of Mn was also determined in optimum conditions with 56 mg/g. Therefore, the alginate-thiosalicylate-based ionic liquid system is considered an effective and environmentally friendly method for removing Mn heavy metal due to the high removal efficiency achieved.

Characterization and novel pathway of atrazine catabolism by Agrobacterium rhizogenes AT13 and its potential for environmental bioremediation

Agrobacterium rhizogenes AT13, a novel bacterial strain that was isolated from contaminated soil, could utilize atrazine as the sole nitrogen, thereby degrading it. Optimization of the degradation reaction using a Box-Behnken design resulted in 99.94% atrazine degradation at pH 8.57, with an inoculum size of 3.10 × 10⁹ CFU/mL and a concentration of 50 mg/L atrazine. Ultra-high performance liquid chromatography-electrospray ionization-high resolution mass spectrometry (UPLC-ESI-HRMS), liquid chromatography tandem mass spectrometry (LC-MS/MS) and high performance liquid chromatography (HPLC) analyses identified and quantified six reported metabolites and a novel metabolite (2-hydroxypropazine) from atrazine degradation by AT13. On the basis of these metabolites, we propose an atrazine degradation pathway that includes dichlorination, hydroxylation, deamination, dealkylation and methylation reactions. The toxicity of the degradation products was evaluated by Toxicity Estimation Software Tool (T.E.S.T). Bioaugmentation of atrazine-polluted soils/water with strain AT13 significantly improved the atrazine removal rate. Thus, AT13 has potential applications in bioremediation.

Microbiomes and glyphosate biodegradation in edaphic and aquatic environments: recent issues and trends

Glyphosate (N-(phosphonomethyl)glycine) has emerged as the top-selling herbicide worldwide because of its versatility in controlling annual and perennial weeds and the extensive use of glyphosate-resistant crops. Concerns related to the widespread use of glyphosate and its ubiquitous presence in the environment has led to a large number of studies and reviews, which examined the toxicity and fate of glyphosate and its major metabolite, aminomethylphosphonic acid (AMPA) in the environment. Because the biological breakdown of glyphosate is most likely the main elimination process, the biodegradation of glyphosate has also been the object of abundant experimental work. Importantly, glyphosate biodegradation in aquatic and soil ecosystems is affected not only by the composition and the activity of microbial communities, but also by the physical environment. However, the interplay between microbiomes and glyphosate biodegradation in edaphic and aquatic environments has rarely been considered before. The proposed minireview aims at filling this gap. We summarize the most recent work exploring glyphosate biodegradation in natural aquatic biofilms, the biological, chemical and physical factors and processes playing on the adsorption, transport and biodegradation of glyphosate at different levels of soil organization and under different agricultural managements, and its impact on soil microbial communities.

Isolation and optimization of a glyphosate-degrading Rhodococcus soli G41 for bioremediation

A widely used herbicide for controlling weeds, glyphosate, is causing environmental pollution. It is necessary to remove it from environment using a cost-effective and eco-friendly method. The aims of this study were to isolate glyphosate-degrading bacteria and to optimize their degradative conditions required for bioremediation. Sixteen bacterial strains were isolated through enrichment and one strain, Rhodococcus soli G41, demonstrated a high removal rate of glyphosate than other strains. Response surface methodology was employed to optimize distinct environmental factors on glyphosate degradation of G41 strain. The optimal conditions for the maximum glyphosate degradation were found to have the NH4Cl concentration of 0.663% and glyphosate concentration of 0.115%, resulting in a maximum degradation of 42.7% after 7 days. Bioremediation analysis showed 47.1% and 40% of glyphosate in unsterile soil and sterile soil was removed by G41 strain after 14 days, respectively. The presence of soxB gene in G41 strain indicates that the glyphosate is degraded via the eco-friendly sarcosine pathway. The results indicated that G41 strain has the potential to serve as an in-situ candidate for bioremediation of glyphosate polluted environments.

Analysis of the Genome of the Heavy Metal Resistant and Hydrocarbon-Degrading Rhizospheric Pseudomonas qingdaonensis ZCR6 Strain and Assessment of Its Plant-Growth-Promoting Traits

The Pseudomonas qingdaonensis ZCR6 strain, isolated from the rhizosphere of Zea mays growing in soil co-contaminated with hydrocarbons and heavy metals, was investigated for its plant growth promotion, hydrocarbon degradation, and heavy metal resistance. In vitro bioassays confirmed all of the abovementioned properties. ZCR6 was able to produce indole acetic acid (IAA), siderophores, and ammonia, solubilized Ca₃(PO₄)₂, and showed surface active properties and activity of cellulase and very high activity of 1-aminocyclopropane-1-carboxylic acid deaminase (297 nmol α-ketobutyrate mg⁻¹ h⁻¹). The strain degraded petroleum hydrocarbons (76.52% of the initial hydrocarbon content was degraded) and was resistant to Cd, Zn, and Cu (minimal inhibitory concentrations reached 5, 15, and 10 mM metal, respectively). The genome of the ZCR6 strain consisted of 5,507,067 bp, and a total of 5055 genes were annotated, of which 4943 were protein-coding sequences. Annotation revealed the presence of genes associated with nitrogen fixation, phosphate solubilization, sulfur metabolism, siderophore biosynthesis and uptake, synthesis of IAA, ethylene modulation, heavy metal resistance, exopolysaccharide biosynthesis, and organic compound degradation. Complete characteristics of the ZCR6 strain showed its potential multiway properties for enhancing the phytoremediation of co-contaminated soils. To our knowledge, this is the first analysis of the biotechnological potential of the species P. qingdaonensis.

Enhanced removal of fifteen pesticide mixture by a single bacterial strain using response surface methodology and its application in raw milk

PURPOSE

Environmental contamination with various pesticides accompanied by uncontrolled use contributes to severe ecological and health problems. Although extensive research was conducted on pesticides degradation, very few reports have demonstrated the degradation of mixed pesticides. Consequently, this study aimed to evaluate the removal efficacy of highly potent bacterial isolate for pesticide mixture under optimal culture conditions, followed by their application in milk.

METHODS

Isolation and selection of bacterial isolates were performed from 40 milk samples by enrichment culture technique and were screened to obtain highly potent bacterial strain identified by 16 S rDNA analysis. The statistics-based experimental designs were applied to optimize the culture conditions towards the best degradation of pesticides mixture, followed by subsequent utilization in milk. The degradation ratio of pesticides was analyzed using gas chromatography-mass spectrometry.

RESULTS

In this study, a bacterial strain S6A identified as Bacillus subtilis-mw1 efficiently eliminated environmental contaminants from different groups of pesticide residues. The statistical optimization showcased optimum settings that accomplished the highest pesticide mixture degradation (61.59 %). The application experiment manifested that degradation of pesticide mixtures of sterile milk (STM) was relatively faster than non-sterile milk (NSTM).

CONCLUSIONS

The obtained results assist in eliminating environmental contamination with various groups of pesticide residues. Furthermore, it can be employed in reducing pesticide residues that cause milk contamination to increase safety and quality.Graphical abstract.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s40201-021-00683-0.

Pesticide treatment in biobed systems at microcosms level under critical moisture and temperature range using an Orthic Solonchaks soil from southeastern Mexico amended with corn husk as support

Agriculture effluents from cleaning and handling equipment used in pesticide applications can contaminate superficial and groundwater sources when not correctly disposed of. Biobeds using soil enriched with amendments represent a viable technology to control and minimize pesticide pollution of soil and water in farmlands. They are usually installed outdoors without protection, making them vulnerable to rain flooding, lack of moisture, drought, and intense heat or cold. Temperature (T) and moisture (M) of the biomixture are considered two of the most important physical factor affecting pesticide dissipation. This study aimed to evaluate the effect of T and M on the dissipation of five of the most used pesticides (carbofuran, atrazine, 2,4-D, diazinon, and glyphosate) in Yucatan State, Mexico. Three experiments using miniaturized biobeds considering optimal temperature and moisture (T of 30 ± 2 °C and 90% water holding capacity [WHC]) were performed. The optimal dissipation time and the effect of T, M variations, and volatilization was determined. The optimal dissipation time was over 14 days. Carbofuran was the least dissipated pesticide and glyphosate the most. The primary factor affecting pesticide dissipation was T (P < 0.05), reaching rates of dissipation of 99% at 45 °C. Variations of M in the biomixture were not significant on pesticide dissipation (P > 0.05). The white-rot fungi were observed; its presence was related to increments of T. Head Space analysis (at 45 °C) showed low pesticide volatilization (≤0.03%) for all pesticide used were quantified; water vapor condensation could reduce the pesticide volatilization for experimental conditions.

Metabolic response of bacteria to elevated concentrations of glyphosate-based herbicide

Glyphosate-based herbicides (GBHs) are the most widespread commonly used broad-spectrum herbicides that contaminate soils and waters, are toxic to bacteria, plants and animals, and have been classified as 'probably carcinogenic to humans' by the International Agency for Research on Cancer in 2015. Particular soil bacteria and fungi can degrade GBHs, hence, search for new GBH-degrading strains or microbial consortia, effective under specific growth conditions and local environment, seems to be a promising solution for bio-remediation of glyphosate-contaminated environment. Consequently, there is a need for rapid and informative methods to evaluate the GBH-induced changes of the metabolic pathways in cells, that may serve as indicators of GBH-degrading potential. Three new GBH-degrading bacterial strains, Pseudomonas sp., Actinobacteria and Serratia sp. were isolated from sludge of municipal waste water treatment plant (Daugavgriva, Riga, Latvia), agricultural soil and plant tissue, respectively. This study examined the response of these isolates to elevated concentrations of glyphosate (GLP) (100 and 500 mg/L) in GBH Klinik® 360 SL. The GBH-induced shift of metabolic activity in cells of Pseudomonas sp. was shown by tests on EcoPlates™. Fourier transform infrared (FTIR) spectroscopy analyses were used to evaluate the metabolomic response of bacteria to elevated concentrations of GBH in the growth environment. The spectra of Pseudomonas sp. and Serratia sp., incubated with and without GBH, were similar, thus indicating their GBH-resistance. The absorption at 1736 cm-1, assigned to ester carbonyl stretch vibrations, was detected in spectra of all three bacteria. The highest ester content was detected in Actinobacteria grown in medium with 1.0% molasses and 100 or 500 mg/L GLP in GBH Klinik®. An increase of cellular amounts of esters, either those of phospholipids or poly-β-hydroxybutyrates, indicates degradation of GLP. Therefore, monitoring the ester carbonyl stretch vibration band in FTIR spectra of bacterial biomass may speed up the search GBH-degrading strains. Microbiological tests and cell metabolic response studies by FTIR spectroscopy showed that the three new isolates of Pseudomonas sp., Actinobacteria and Serratia sp. were resistant to elevated concentrations of GBH Klinik® in growth environment and exhibited the potential for GBH degradation.

Synthesis of dendrimer functionalized adsorbents for rapid removal of glyphosate from aqueous solution

Protonated PAMAM grafted adsorbents for rapid removal of glyphosate.