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Liao C, Senanayake IC, Dong W, Thilini Chethana KW, Tangtrakulwanich K, Zhang Y, Doilom M. Taxonomic and Phylogenetic Updates on Apiospora: Introducing Four New Species from Wurfbainia villosa and Grasses in China. J Fungi (Basel) 2023; 9:1087. [PMID: 37998892 PMCID: PMC10671859 DOI: 10.3390/jof9111087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2023] [Revised: 10/17/2023] [Accepted: 11/01/2023] [Indexed: 11/25/2023] Open
Abstract
Apiospora, an ascomycetous genus in Apiosporaceae, comprises saprobes, endophytes, and pathogens of humans and plants. They have a cosmopolitan distribution with a wide range of hosts reported from Asia. In the present study, we collected and isolated Apiospora species from Wurfbainia villosa and grasses in Guangdong and Yunnan provinces in China. Multi-locus phylogeny based on the internal transcribed spacer, the large subunit nuclear rDNA, the partial translation elongation factor 1-α, and β-tubulin was performed to clarify the phylogenetic affinities of the Apiospora species. Based on the distinctive morphological characteristics and molecular evidence, Ap. endophytica, Ap. guangdongensis, Ap. wurfbainiae, and Ap. yunnanensis are proposed. Descriptions, illustrations, and notes for the newly discovered species are provided and compared with closely related Apiospora species. An updated phylogeny of Apiospora is presented, along with a discussion on the phylogenetic affinities of ambiguous taxa.
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Affiliation(s)
- Chunfang Liao
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Indunil Chinthani Senanayake
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
| | - Wei Dong
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
| | - Kandawatte Wedaralalage Thilini Chethana
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
- Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | | | - Yunxia Zhang
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
| | - Mingkwan Doilom
- Innovative Institute for Plant Health, Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China; (C.L.); (I.C.S.); (W.D.); (K.W.T.C.); (Y.Z.)
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Bermúdez-Cova MA, Cruz-Laufer AJ, Piepenbring M. Hyperparasitic Fungi on Black Mildews (Meliolales, Ascomycota): Hidden Fungal Diversity in the Tropics. FRONTIERS IN FUNGAL BIOLOGY 2022; 3:885279. [PMID: 37746226 PMCID: PMC10512288 DOI: 10.3389/ffunb.2022.885279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Accepted: 04/21/2022] [Indexed: 09/26/2023]
Abstract
Hyperparasitism on plant-parasitic fungi is a widespread but rarely studied phenomenon. Here, for the first time, we compile in a checklist information provided by peer-reviewed literature for fungi growing on colonies of black mildews (Meliolales, Ascomycota), a species-rich group of tropical and subtropical plant-parasitic microfungi. The checklist contains information on 189 species of contact-biotrophic microfungi in 82 genera. They belong to seven morphological groups: dematiaceous hyphomycetes, moniliaceous hyphomycetes, pycnidioid, perithecioid, catathecioid, and apothecioid fungi. By the fact that species accumulation curves do not reach saturation for any tropical country, it is evident that the knowledge of the diversity of hyperparasitic fungi on Meliolales is incomplete. A network analysis of records of hyperparasitic fungi, their host fungi and host plants shows that genera of hyperparasitic fungi are generalists concerning genera of Meliolales. However, most species of hyperparasitic fungi are restricted to meliolalean hosts. In addition to hyperparasitic fungi, diverse further microorganisms use meliolalean colonies as ecological niche. Systematic positions of most species are unknown because DNA sequence data are lacking for species of fungi hyperparasitic on Meliolales. We discuss the specific challenges of obtaining DNA sequence data from hyperparasitic fungi. In order to better understand the diversity, evolution and biology of hyperparasitic fungi, it is necessary to increase sampling efforts and to undertake further morphological, molecular, and ecological studies.
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Affiliation(s)
- Miguel A. Bermúdez-Cova
- Mycology Research Group, Faculty of Biological Sciences, Goethe University Frankfurt am Main, Frankfurt am Main, Germany
- Departamento de Biología de Organismos, División de Ciencias Biológicas, Universidad Simón Bolívar, Caracas, Venezuela
| | - Armando J. Cruz-Laufer
- Centre for Environmental Sciences, Faculty of Sciences, Hasselt University, Diepenbeek, Belgium
| | - Meike Piepenbring
- Mycology Research Group, Faculty of Biological Sciences, Goethe University Frankfurt am Main, Frankfurt am Main, Germany
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Marasinghe DS, Hongsanan S, Wanasinghe DN, Boonmee S, Lumyong S, Hyde KD, Ning X. Morpho-molecular characterization of Brunneofissuraceae fam. nov., Cirsosia mangiferae sp. nov., and Asterina neomangiferae nom. nov. Mycol Prog 2022. [DOI: 10.1007/s11557-021-01767-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Lembosia mimusopis sp. nov. from Thailand. MYCOTAXON 2021. [DOI: 10.5248/136.635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
A novel species Lembosia mimusopis is introduced with evidence from morpho-molecular characterization. It was collected from the leaves of Mimusops elengi in Chiang Rai Province, Thailand. The new species is unique in having a mucilaginous sheath surrounding its immature
ascospores. LSU sequence analyses phylogenetically support separation of this species from other Lembosia species.
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Species concepts of Dothideomycetes: classification, phylogenetic inconsistencies and taxonomic standardization. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00485-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Chethana KWT, Jayawardena RS, Chen YJ, Konta S, Tibpromma S, Phukhamsakda C, Abeywickrama PD, Samarakoon MC, Senwanna C, Mapook A, Tang X, Gomdola D, Marasinghe DS, Padaruth OD, Balasuriya A, Xu J, Lumyong S, Hyde KD. Appressorial interactions with host and their evolution. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00487-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Tennakoon DS, Kuo CH, Maharachchikumbura SSN, Thambugala KM, Gentekaki E, Phillips AJL, Bhat DJ, Wanasinghe DN, de Silva NI, Promputtha I, Hyde KD. Taxonomic and phylogenetic contributions to Celtis formosana, Ficus ampelas, F. septica, Macaranga tanarius and Morus australis leaf litter inhabiting microfungi. FUNGAL DIVERS 2021. [DOI: 10.1007/s13225-021-00474-w] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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8
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Firmino AL, Pereira OL. A simple method for the cultivation of the "unculturable" asterinaceous fungi (Asterinales/Dothideomycetes). J Microbiol Methods 2021; 187:106272. [PMID: 34166707 DOI: 10.1016/j.mimet.2021.106272] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Revised: 06/15/2021] [Accepted: 06/17/2021] [Indexed: 10/21/2022]
Abstract
Although asterinaceous fungi have been studied for many years, all previous attempts to isolate, cultivate, and propagate these fungi in vitro have failed. This paper provides the first reports of in vitro isolation of representative strains of species belonging to five fungi from different genera belonging to Asterinales. To confirm if the sequences of DNA obtained from the mycelia are the same obtained in the direct extraction, a phylogenetic analysis of nuc LSU rDNA was performed. This paper reports for the first time the success of in vitro culturing of asterinaceous fungi using the ascospores ejection technique, opening perspectives of studies of genetics, physiology, among other aspects of the biology for this very understudied group of fungi.
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Affiliation(s)
- André Luiz Firmino
- Instituto de Ciências Agrárias, Universidade Federal de Uberlândia, 38500-000 Monte Carmelo, Minas Gerais, Brazil
| | - Olinto Liparini Pereira
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900 Viçosa, Minas Gerais, Brazil.
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Hongsanan S, Hyde KD, Phookamsak R, Wanasinghe DN, McKenzie EHC, Sarma VV, Lücking R, Boonmee S, Bhat JD, Liu NG, Tennakoon DS, Pem D, Karunarathna A, Jiang SH, Jones GEB, Phillips AJL, Manawasinghe IS, Tibpromma S, Jayasiri SC, Sandamali D, Jayawardena RS, Wijayawardene NN, Ekanayaka AH, Jeewon R, Lu YZ, Phukhamsakda C, Dissanayake AJ, Zeng XY, Luo ZL, Tian Q, Thambugala KM, Dai D, Samarakoon MC, Chethana KWT, Ertz D, Doilom M, Liu JK(J, Pérez-Ortega S, Suija A, Senwanna C, Wijesinghe SN, Niranjan M, Zhang SN, Ariyawansa HA, Jiang HB, Zhang JF, Norphanphoun C, de Silva NI, Thiyagaraja V, Zhang H, Bezerra JDP, Miranda-González R, Aptroot A, Kashiwadani H, Harishchandra D, Sérusiaux E, Abeywickrama PD, Bao DF, Devadatha B, Wu HX, Moon KH, Gueidan C, Schumm F, Bundhun D, Mapook A, Monkai J, Bhunjun CS, Chomnunti P, Suetrong S, Chaiwan N, Dayarathne MC, Yang J, Rathnayaka AR, Xu JC, Zheng J, Liu G, Feng Y, Xie N. Refined families of Dothideomycetes: orders and families incertae sedis in Dothideomycetes. FUNGAL DIVERS 2020. [DOI: 10.1007/s13225-020-00462-6] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
AbstractNumerous new taxa and classifications of Dothideomycetes have been published following the last monograph of families of Dothideomycetes in 2013. A recent publication by Honsanan et al. in 2020 expanded information of families in Dothideomycetidae and Pleosporomycetidae with modern classifications. In this paper, we provide a refined updated document on orders and families incertae sedis of Dothideomycetes. Each family is provided with an updated description, notes, including figures to represent the morphology, a list of accepted genera, and economic and ecological significances. We also provide phylogenetic trees for each order. In this study, 31 orders which consist 50 families are assigned as orders incertae sedis in Dothideomycetes, and 41 families are treated as families incertae sedis due to lack of molecular or morphological evidence. The new order, Catinellales, and four new families, Catinellaceae, Morenoinaceae Neobuelliellaceae and Thyrinulaceae are introduced. Seven genera (Neobuelliella, Pseudomicrothyrium, Flagellostrigula, Swinscowia, Macroconstrictolumina, Pseudobogoriella, and Schummia) are introduced. Seven new species (Acrospermum urticae, Bogoriella complexoluminata, Dothiorella ostryae, Dyfrolomyces distoseptatus, Macroconstrictolumina megalateralis, Patellaria microspora, and Pseudomicrothyrium thailandicum) are introduced base on morphology and phylogeny, together with two new records/reports and five new collections from different families. Ninety new combinations are also provided in this paper.
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Le Renard L, Stockey RA, Upchurch G, Berbee ML. A new epiphyllous fly-speck fungus from the Early Cretaceous Potomac Group of Virginia (125-112 Ma): Protographum luttrellii, gen. et sp. nov. Mycologia 2020; 112:504-518. [PMID: 32167869 DOI: 10.1080/00275514.2020.1718441] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Fly-speck fungi reproduce via thyriothecia that consist of sporogenous tissue appressed to cuticle surfaces of plant leaves and covered by a shield-like scutellum. Thyriothecial scutella likely evolved repeatedly in Dothideomycetes (Ascomycota), and their morphology varies by lineage. Fly-speck fungi have an exceptionally good fossil record that begins in the Mesozoic. The interpretation of scutellum characters in fossils may provide insights into origins of Dothideomycetes and help calibrate the timing of ascomycete evolution. From sediments of the Lower Cretaceous (125-112 Ma) Potomac Group of Virginia, from Dutch Gap Canal, lower Zone 1, we found scutella similar to those of extant Aulographaceae (Dothideomycetes), attached to a single piece of dispersed coniferous cuticle. We analyze hyphae and scutellum development among four extant Aulographaceae species for comparison with the fossil. The excellent preservation of fungi on the leaf cuticle surface allows us to infer a developmental sequence for the fossil. Scutellum development begins with coordinated growth of multiple neighboring generator hyphae and continues with hyphae producing two-dimensional pseudomonopodial, dichotomous, radial growth. Asci and ascospores were not found. We coded states for seven morphological characters using direct observations of the fossil and eight extant taxa, and using the literature for 28 others. We inferred a phylogeny using nuclear 18S and 28S rDNA of 36 extant taxa, 34 Dothideomycetes and two Arthoniomycetes. The phylogeny includes newly determined sequences from five species, two from Aulographaceae. With a branch-and-bound search, we inferred the most parsimonious placements of the fossil given the molecular tree topology. The parsimony analysis constrained by the rDNA phylogeny places the fossil taxon among stem lineages near Aulographaceae or among the known living members of Aulographaceae. We describe the fossil morphotype as Protographum luttrellii, gen. et sp. nov. The fossil provides the oldest evidence of morphological characters restricted among extant fungi to Aulographaceae.
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Affiliation(s)
- Ludovic Le Renard
- Department of Botany, University of British Columbia , Vancouver BC, V6T 1Z4, Canada
| | - Ruth A Stockey
- Department of Botany and Plant Pathology, 2082 Cordley Hall, Oregon State University, Corvallis, Oregon 97331
| | - Garland Upchurch
- Department of Biology, Texas State University , San Marcos, Texas 78666
| | - Mary L Berbee
- Department of Botany, University of British Columbia , Vancouver BC, V6T 1Z4, Canada
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Fungal diversity notes 1036–1150: taxonomic and phylogenetic contributions on genera and species of fungal taxa. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00429-2] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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12
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Zeng XY, Wu HX, Hongsanan S, Jeewon R, Wen TC, Maharachchikumbura SSN, Chomnunti P, Hyde KD. Taxonomy and the evolutionary history of Micropeltidaceae. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00431-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanasinghe DN, Hongsanan S, Doilom M, Tennakoon DS, Machado AR, Firmino AL, Ghosh A, Karunarathna A, Mešić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan I, Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Dueñas M, Jadan M, Martín MP, Samarakoon MC, Dayarathne MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov TS, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J. Fungal diversity notes 929–1035: taxonomic and phylogenetic contributions on genera and species of fungi. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00421-w] [Citation(s) in RCA: 62] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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Samarakoon MC, Hyde KD, Hongsanan S, McKenzie EHC, Ariyawansa HA, Promputtha I, Zeng XY, Tian Q, Liu JK(J. Divergence time calibrations for ancient lineages of Ascomycota classification based on a modern review of estimations. FUNGAL DIVERS 2019. [DOI: 10.1007/s13225-019-00423-8] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Hyde KD, Norphanphoun C, Chen J, Dissanayake AJ, Doilom M, Hongsanan S, Jayawardena RS, Jeewon R, Perera RH, Thongbai B, Wanasinghe DN, Wisitrassameewong K, Tibpromma S, Stadler M. Thailand’s amazing diversity: up to 96% of fungi in northern Thailand may be novel. FUNGAL DIVERS 2018. [DOI: 10.1007/s13225-018-0415-7] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Videira S, Groenewald J, Nakashima C, Braun U, Barreto R, de Wit P, Crous P. Mycosphaerellaceae - Chaos or clarity? Stud Mycol 2017; 87:257-421. [PMID: 29180830 PMCID: PMC5693839 DOI: 10.1016/j.simyco.2017.09.003] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
The Mycosphaerellaceae represent thousands of fungal species that are associated with diseases on a wide range of plant hosts. Understanding and stabilising the taxonomy of genera and species of Mycosphaerellaceae is therefore of the utmost importance given their impact on agriculture, horticulture and forestry. Based on previous molecular studies, several phylogenetic and morphologically distinct genera within the Mycosphaerellaceae have been delimited. In this study a multigene phylogenetic analysis (LSU, ITS and rpb2) was performed based on 415 isolates representing 297 taxa and incorporating ex-type strains where available. The main aim of this study was to resolve the phylogenetic relationships among the genera currently recognised within the family, and to clarify the position of the cercosporoid fungi among them. Based on these results many well-known genera are shown to be paraphyletic, with several synapomorphic characters that have evolved more than once within the family. As a consequence, several old generic names including Cercosporidium, Fulvia, Mycovellosiella, Phaeoramularia and Raghnildiana are resurrected, and 32 additional genera are described as new. Based on phylogenetic data 120 genera are now accepted within the family, but many currently accepted cercosporoid genera still remain unresolved pending fresh collections and DNA data. The present study provides a phylogenetic framework for future taxonomic work within the Mycosphaerellaceae.
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Key Words
- Adelopus gaeumannii T. Rohde
- Amycosphaerella keniensis (Crous & T.A. Cout.) Videira & Crous
- Australosphaerella Videira & Crous
- Australosphaerella nootherensis (Carnegie) Videira & Crous
- Biharia vangueriae Thirum. & Mishra
- Brunswickiella Videira & Crous
- Brunswickiella parsonsiae (Crous & Summerell) Videira & Crous
- Catenulocercospora C. Nakash., Videira & Crous
- Catenulocercospora fusimaculans (G.F. Atk.) C. Nakash., Videira & Crous
- Cercoramularia Videira, H.D. Shin, C. Nakash. & Crous
- Cercoramularia koreana Videira, H.D. Shin, C. Nakash. & Crous
- Cercospora brachycarpa Syd.
- Cercospora cajani Henn.
- Cercospora desmodii Ellis & Kellerm.
- Cercospora ferruginea Fuckel
- Cercospora gnaphaliacea Cooke
- Cercospora gomphrenicola Speg.
- Cercospora henningsii Allesch.
- Cercospora mangiferae Koord.
- Cercospora microsora Sacc.
- Cercospora rosicola Pass.
- Cercospora smilacis Thüm.
- Cercospora tiliae Peck
- Cercosporidium californicum (S.T. Koike & Crous) Videira & Crous
- Cercosporidium helleri Earle
- Chuppomyces Videira & Crous
- Chuppomyces handelii (Bubák) U. Braun, C. Nakash., Videira & Crous
- Cladosporium bacilligerum Mont. & Fr.
- Cladosporium chaetomium Cooke
- Cladosporium fulvum Cooke
- Cladosporium lonicericola Yong H. He & Z.Y. Zhang
- Cladosporium personatum Berk. & M.A. Curtis
- Clarohilum Videira & Crous
- Clarohilum henningsii (Allesch.) Videira & Crous
- Clasterosporium degenerans Syd. & P. Syd.
- Clypeosphaerella calotropidis (Ellis & Everh.) Videira & Crous
- Collarispora Videira & Crous
- Collarispora valgourgensis (Crous) Videira & Crous
- Coremiopassalora U. Braun, C. Nakash., Videira & Crous
- Coremiopassalora eucalypti (Crous & Alfenas) U. Braun, C. Nakash., Videira & Crous
- Coremiopassalora leptophlebae (Crous et al.) U. Braun, C. Nakash., Videira & Crous
- Coryneum vitiphyllum Speschnew
- Cryptosporium acicola Thüm.
- Deightonomyces Videira & Crous
- Deightonomyces daleae (Ellis & Kellerm.) Videira & Crous
- Devonomyces Videira & Crous
- Devonomyces endophyticus (Crous & H. Sm. Ter) Videira & Crous
- Distocercosporaster Videira, H.D. Shin, C. Nakash. & Crous
- Distocercosporaster dioscoreae (Ellis & G. Martin) Videira, H.D. Shin, C. Nakash. & Crous
- Distomycovellosiella U. Braun, C. Nakash., Videira & Crous
- Distomycovellosiella brachycarpa (Syd.) U. Braun, C. Nakash., Videira & Crous
- Exopassalora Videira & Crous
- Exopassalora zambiae (Crous & T.A. Cout.) Videira & Crous
- Exosporium livistonicola U. Braun, Videira & Crous for Distocercospora livistonae U. Braun & C.F. Hill
- Exutisphaerella Videira & Crous
- Exutisphaerella laricina (R. Hartig) Videira & Crous
- Fusoidiella anethi (Pers.) Videira & Crous
- Graminopassalora U. Braun, C. Nakash., Videira & Crous
- Graminopassalora graminis (Fuckel) U. Braun, C. Nakash., Videira & Crous
- Helicoma fasciculatum Berk. & M.A. Curtis.
- Hyalocercosporidium Videira & Crous
- Hyalocercosporidium desmodii Videira & Crous
- Hyalozasmidium U. Braun, C. Nakash., Videira & Crous
- Hyalozasmidium aerohyalinosporum (Crous & Summerell) Videira & Crous
- Hyalozasmidium sideroxyli U. Braun, C. Nakash., Videira & Crous
- Isariopsis griseola Sacc.
- Madagascaromyces U. Braun, C. Nakash., Videira & Crous
- Madagascaromyces intermedius (Crous & M.J. Wingf.) Videira & Crous
- Micronematomyces U. Braun, C. Nakash., Videira & Crous
- Micronematomyces caribensis (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Micronematomyces chromolaenae (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Multi-gene phylogeny
- Mycosphaerella
- Neoceratosperma haldinae U. Braun, C. Nakash., Videira & Crous
- Neoceratosperma legnephoricola U. Braun, C. Nakash., Videira & Crous
- Neocercosporidium Videira & Crous
- Neocercosporidium smilacis (Thüm.) U. Braun, C. Nakash., Videira & Crous
- Neophloeospora Videira & Crous
- Neophloeospora maculans (Bérenger) Videira & Crous
- Nothopassalora U. Braun, C. Nakash., Videira & Crous
- Nothopassalora personata (Berk. & M.A. Curtis) U. Braun, C. Nakash., Videira & Crous
- Nothopericoniella Videira & Crous
- Nothopericoniella perseae-macranthae (Hosag. & U. Braun) Videira & Crous
- Nothophaeocryptopus Videira, C. Nakash., U. Braun, Crous
- Nothophaeocryptopus gaeumannii (T. Rohde) Videira, C. Nakash., U. Braun, Crous
- Pachyramichloridium Videira & Crous
- Pachyramichloridium pini (de Hoog & Rahman) U. Braun, C. Nakash., Videira & Crous
- Paracercosporidium Videira & Crous
- Paracercosporidium microsorum (Sacc.) U. Braun, C. Nakash., Videira & Crous
- Paracercosporidium tiliae (Peck) U. Braun, C. Nakash., Videira & Crous
- Paramycosphaerella wachendorfiae (Crous) Videira & Crous
- Paramycovellosiella Videira, H.D. Shin & Crous
- Paramycovellosiella passaloroides (G. Winter) Videira, H.D. Shin & Crous
- Parapallidocercospora Videira, Crous, U. Braun, C. Nakash.
- Parapallidocercospora colombiensis (Crous et al.) Videira & Crous
- Parapallidocercospora thailandica (Crous et al.) Videira & Crous
- Phaeocercospora juniperina (Georgescu & Badea) U. Braun, C. Nakash., Videira & Crous
- Plant pathogen
- Pleopassalora Videira & Crous
- Pleopassalora perplexa (Beilharz et al.) Videira & Crous
- Pleuropassalora U. Braun, C. Nakash., Videira & Crous
- Pleuropassalora armatae (Crous & A.R. Wood) U. Braun, C. Nakash., Videira & Crous
- Pluripassalora Videira & Crous
- Pluripassalora bougainvilleae (Munt.-Cvetk.) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora convoluta (Crous & Den Breeÿen) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora nodosa (Constant.) U. Braun, C. Nakash., Videira & Crous
- Pseudocercospora platanigena Videira & Crous for Stigmella platani Fuckel, non Pseudocercospora platani (J.M. Yen) J.M. Yen 1979
- Pseudocercospora zambiensis (Deighton) Crous & U. Braun
- Pseudopericoniella Videira & Crous
- Pseudopericoniella levispora (Arzanlou, W. Gams & Crous) Videira & Crous
- Pseudophaeophleospora U. Braun, C. Nakash., Videira & Crous
- Pseudophaeophleospora atkinsonii (Syd.) U. Braun, C. Nakash., Videira & Crous
- Pseudophaeophleospora stonei (Crous) U. Braun, C. Nakash., Videira & Crous
- Pseudozasmidium Videira & Crous
- Pseudozasmidium eucalypti (Crous & Summerell) Videira & Crous
- Pseudozasmidium nabiacense (Crous & Carnegie) Videira & Crous
- Pseudozasmidium parkii (Crous & Alfenas) Videira & Crous
- Pseudozasmidium vietnamense (Barber & T.I. Burgess) Videira & Crous
- Ragnhildiana ampelopsidis (Peck) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana diffusa (Heald & F.A. Wolf) Videira & Crous
- Ragnhildiana ferruginea (Fuckel) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana gnaphaliaceae (Cooke) Videira, H.D. Shin, C. Nakash. & Crous
- Ragnhildiana perfoliati (Ellis & Everh.) U. Braun, C. Nakash., Videira & Crous
- Ragnhildiana pseudotithoniae (Crous & Cheew.) U. Braun, C. Nakash., Videira & Crous
- Ramulispora sorghiphila U. Braun, C. Nakash., Videira & Crous
- Rhachisphaerella Videira & Crous
- Rhachisphaerella mozambica (Arzanlou & Crous) Videira & Crous
- Rosisphaerella Videira & Crous
- Rosisphaerella rosicola (Pass.) U. Braun, C. Nakash., Videira & Crous
- Scolicotrichum roumeguerei Briosi & Cavara
- Septoria martiniana Sacc
- Sphaerella araneosa Rehm
- Sphaerella laricina R. Hartig
- Stictosepta cupularis Petr.
- Stigmella platani Fuckel
- Sultanimyces Videira & Crous
- Sultanimyces vitiphyllus (Speschnew) Videira & Crous
- Tapeinosporium viride Bonord
- Taxonomy
- Utrechtiana roumeguerei (Cavara) Videira & Crous
- Virosphaerella Videira & Crous
- Virosphaerella irregularis (Cheew. et al.) Videira & Crous
- Virosphaerella pseudomarksii (Cheew. et al.) Videira & Crous
- Xenosonderhenioides Videira & Crous
- Xenosonderhenioides indonesiana C. Nakash., Videira & Crous
- Zasmidium arcuatum (Arzanlou et al.) Videira & Crous
- Zasmidium biverticillatum (Arzanlou & Crous) Videira & Crous
- Zasmidium cerophilum (Tubaki) U. Braun, C. Nakash., Videira & Crous
- Zasmidium daviesiae (Cooke & Massee) U. Braun, C. Nakash., Videira & Crous
- Zasmidium elaeocarpi U. Braun, C. Nakash., Videira & Crous
- Zasmidium eucalypticola U. Braun, C. Nakash., Videira & Crous
- Zasmidium grevilleae U. Braun, C. Nakash., Videira & Crous
- Zasmidium gupoyu (R. Kirschner) U. Braun, C. Nakash., Videira & Crous
- Zasmidium hakeae U. Braun, C. Nakash., Videira & Crous
- Zasmidium iteae (R. Kirschner) U. Braun, C. Nakash., Videira & Crous
- Zasmidium musae-banksii Videira & Crous for Ramichloridium australiense Arzanlou & Crous, non Zasmidium australiense (J.L. Mulder) U. Braun & Crous 2013
- Zasmidium musigenum Videira & Crous for Veronaea musae Stahel ex M.B. Ellis, non Zasmidium musae (Arzanlou & Crous) Crous & U. Braun 2010
- Zasmidium proteacearum (D.E. Shaw & Alcorn) U. Braun, C. Nakash. & Crous
- Zasmidium pseudotsugae (V.A.M. Mill. & Bonar) Videira & Crous
- Zasmidium pseudovespa (Carnegie) U. Braun, C. Nakash., Videira & Crous
- Zasmidium schini U. Braun, C. Nakash., Videira & Crous
- Zasmidium strelitziae (Arzanlou et al.) Videira & Crous
- Zasmidium tsugae (Dearn.) Videira & Crous
- Zasmidium velutinum (G. Winter) Videira & Crous
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Affiliation(s)
- S.I.R. Videira
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - J.Z. Groenewald
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
| | - C. Nakashima
- Graduate School of Bioresources, Mie University, 1577 Kurima-machiya, Tsu, Mie, 514-8507, Japan
| | - U. Braun
- Martin-Luther-Universität Halle-Wittenberg, Institut für Biologie, Bereich Geobotanik, Herbarium, Neuwerk 21, 06099, Halle (Saale), Germany
| | - R.W. Barreto
- Departamento de Fitopatologia, Universidade Federal de Viçosa, Viçosa, MG, 36570-900, Brazil
| | - P.J.G.M. de Wit
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
| | - P.W. Crous
- Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands
- Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
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Aylward J, Steenkamp ET, Dreyer LL, Roets F, Wingfield BD, Wingfield MJ. A plant pathology perspective of fungal genome sequencing. IMA Fungus 2017; 8:1-15. [PMID: 28824836 PMCID: PMC5493528 DOI: 10.5598/imafungus.2017.08.01.01] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 01/19/2017] [Indexed: 10/26/2022] Open
Abstract
The majority of plant pathogens are fungi and many of these adversely affect food security. This mini-review aims to provide an analysis of the plant pathogenic fungi for which genome sequences are publically available, to assess their general genome characteristics, and to consider how genomics has impacted plant pathology. A list of sequenced fungal species was assembled, the taxonomy of all species verified, and the potential reason for sequencing each of the species considered. The genomes of 1090 fungal species are currently (October 2016) in the public domain and this number is rapidly rising. Pathogenic species comprised the largest category (35.5 %) and, amongst these, plant pathogens are predominant. Of the 191 plant pathogenic fungal species with available genomes, 61.3 % cause diseases on food crops, more than half of which are staple crops. The genomes of plant pathogens are slightly larger than those of other fungal species sequenced to date and they contain fewer coding sequences in relation to their genome size. Both of these factors can be attributed to the expansion of repeat elements. Sequenced genomes of plant pathogens provide blueprints from which potential virulence factors were identified and from which genes associated with different pathogenic strategies could be predicted. Genome sequences have also made it possible to evaluate adaptability of pathogen genomes and genomic regions that experience selection pressures. Some genomic patterns, however, remain poorly understood and plant pathogen genomes alone are not sufficient to unravel complex pathogen-host interactions. Genomes, therefore, cannot replace experimental studies that can be complex and tedious. Ultimately, the most promising application lies in using fungal plant pathogen genomics to inform disease management and risk assessment strategies. This will ultimately minimize the risks of future disease outbreaks and assist in preparation for emerging pathogen outbreaks.
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Affiliation(s)
- Janneke Aylward
- Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Emma T. Steenkamp
- Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria 0002, South Africa
| | - Léanne L. Dreyer
- Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | - Francois Roets
- Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa
| | | | - Michael J. Wingfield
- Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria 0002, South Africa
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Contribution to the phylogeny and taxonomy of the genus Taeniolella, with a focus on lichenicolous taxa. Fungal Biol 2016; 120:1416-1447. [DOI: 10.1016/j.funbio.2016.05.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2016] [Revised: 05/18/2016] [Accepted: 05/19/2016] [Indexed: 11/19/2022]
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Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Góes-Neto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, de A. Santiago ALCM, Drechsler-Santos ER, Senanayake IC, Tanaka K, Tennakoon TMDS, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar MA, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev D, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, Mafalda-Freire F, Ghosh A, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, Nguyen TTT, Promputtha I, Raj KNA, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen TC, Xu JC, Zhang ZK, Zhao YC, Zhou JL, Zhu L. Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0373-x] [Citation(s) in RCA: 202] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Firmino AL, Inácio CA, Pereira OL, Dianese JC. Additions to the genera Asterolibertia and Cirsosia (Asterinaceae, Asterinales), with particular reference to species from the Brazilian Cerrado. IMA Fungus 2016; 7:9-28. [PMID: 27433438 PMCID: PMC4941690 DOI: 10.5598/imafungus.2016.07.01.02] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2015] [Accepted: 01/05/2016] [Indexed: 11/08/2022] Open
Abstract
Four new Asterolibertia species and a new variety of Cirsosia splendida, all found on native Cerrado plants, belonging to three host families are described, illustrated and named as: A. bahiensis sp. nov. on Erythroxylum sp. (Erythroxylaceae); A. barrinhensis sp. nov. on Diospyros burchellii (Ebenaceae); A. campograndensis sp. nov. on Hirtella glandulosa (Chrysobalanaceae); A. parinaricola sp. nov. on Parinari obtusifolia (Chrysobalanaceae); and Cirsosiasplendida var. laevigata var. nov., showing both sexual and asexual morphs, on H. glandulosa and H. gracilipes (Chrysobalanaceae). Finally, A. licaniae is reported on a new host, H. gracilipes. Keys to all the known species of Asterolibertia and Cirsosia are included.
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Affiliation(s)
- André Luiz Firmino
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - Carlos Antonio Inácio
- Departamento de Fitopatologia, Universidade Federal Rural do Rio de Janeiro, 23851-970, Rio de Janeiro, Brazil
| | - Olinto Liparini Pereira
- Departamento de Fitopatologia, Universidade Federal de Viçosa, 36570-900, Viçosa, Minas Gerais, Brazil
| | - José Carmine Dianese
- Departamento de Fitopatologia, Universidade de Brasília, 70910-900, Brasília, Distrito Federal, Brazil
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Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai DQ, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH, Wang Y. Taxonomy and phylogeny of dematiaceous coelomycetes. FUNGAL DIVERS 2016. [DOI: 10.1007/s13225-016-0360-2] [Citation(s) in RCA: 99] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. FUNGAL DIVERS 2015. [DOI: 10.1007/s13225-015-0351-8] [Citation(s) in RCA: 248] [Impact Index Per Article: 27.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Hongsanan S, Hyde KD, Bahkali AH, Camporesi E, Chomnunti P, Ekanayaka H, Gomes AA, Hofstetter V, Jones EG, Pinho DB, Pereira OL, Tian Q, Wanasinghe DN, Xu JC, Buyck B. Fungal Biodiversity Profiles 11–20. CRYPTOGAMIE MYCOL 2015. [DOI: 10.7872/crym/v36.iss3.2015.355] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Ertz D, Diederich P. Dismantling Melaspileaceae: a first phylogenetic study of Buelliella, Hemigrapha, Karschia, Labrocarpon and Melaspilea. FUNGAL DIVERS 2015. [DOI: 10.1007/s13225-015-0321-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Naming and outline of Dothideomycetes-2014 including proposals for the protection or suppression of generic names. FUNGAL DIVERS 2014; 69:1-55. [PMID: 27284275 DOI: 10.1007/s13225-014-0309-2] [Citation(s) in RCA: 150] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and nonpleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data.
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Boonmee S, Rossman AY, Liu JK, Li WJ, Dai DQ, Bhat JD, Jones EBG, McKenzie EHC, Xu JC, Hyde KD. Tubeufiales, ord. nov., integrating sexual and asexual generic names. FUNGAL DIVERS 2014. [DOI: 10.1007/s13225-014-0304-7] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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