Nucleophilic addition of nitrogen to aryl cations: mimicking Titan chemistry

Ion-molecule reactions of mass-selected ions

Gas-phase reactions of mass-selected ions with neutrals covers a very broad area of fundamental and applied mass spectrometry (MS). Oftentimes, ion-molecule reactions (IMR) can serve as a viable alternative to collision-induced dissociation and other ion dissociation techniques when using tandem MS. This review focuses on the literature pertaining applications of IMR since 2013. During the past decade considerable efforts have been made in analytical applications of IMR, including advances in one of the major techniques for characterization of unsaturated fatty acids and lipids, ozone-induced dissociation, and the development of a new technique for sequencing of large ions, hydrogen atom attachment/abstraction dissociation. Many advances have also been made in identifying gas-phase chemistry specific to a functional group in organic and biological compounds, which are useful in structure elucidation of analytes and differentiation of isomers/isobars. With "soft" ionization techniques like electrospray ionization having become mainstream for quite some time now, the efforts in the area of metal ion catalysis have firmly moved into exploring chemistry of ligated metal complexes in their "natural" oxidation states allowing to model individual steps of mechanisms in homogeneous catalysis, especially in combination with high-level DFT calculations. Finally, IMR continue to contribute to the body of knowledge in the area of chemistry of interstellar processes.

Nitrogen Fixation by Benzene into Pyridine and Aniline in Water/Nitrogen Plasma

We demonstrated direct conversion of benzene into pyridine and aniline, assisted through exact mass measurements (m/z 80.0494, 93.0574, and 94.0651, respectively), through the interaction of benzene with water/nitrogen vapor plasma produced by corona discharge. Systematic analysis using a series of isotopic standards indicated that formation of pyridine and aniline occurred through the reaction between neutral benzene and reactive N+(OH2)2 in water/nitrogen plasma; exact mass measurements of products and intermediates supported this hypothesis. As the proportion of water vapor in plasma increased over time, the reaction proceeded from exclusive formation of protonated pyridine to formation of protonated aniline as the main product; theoretical simulations indicated that the presence of water vapor promoted proton migration to elicit formation of protonated aniline. The reactions we discovered suggest a new mechanism for direct nitrogen fixation.

Charge-Separated Reactive Intermediates from the UV Photodissociation of Chlorobenzene in Solution

Although ultraviolet (UV)-induced photochemical cleavage of carbon–halogen bonds in gaseous halocarbons is mostly homolytic, the photolysis of chlorobenzene in solution has been proposed to produce a phenyl cation, c-C₆H₅⁺, which is a highly reactive intermediate of potential use in chemical synthesis and N₂ activation. Any evidence for such a route to phenyl cations is indirect, with uncertainty remaining about the possible mechanism. Here, ultrafast transient absorption spectroscopy of UV-excited (λ = 240 and 270 nm) chlorobenzene solutions in fluorinated (perfluorohexane) and protic (ethanol and 2,2,2-trifluoroethanol) solvents reveals a broad electronic absorption band centered at 540 nm that is assigned to an isomer of chlorobenzene with both charge-separated and triplet-spin carbene character. This spectroscopic feature is weaker, or absent, when experiments are conducted in cyclohexane. The intermediate isomer of chlorobenzene has a solvent-dependent lifetime of 30–110 ps, determined by reaction with the solvent or quenching to a lower-lying singlet state. Evidence is presented for dissociation to ortho-benzyne, but the intermediate could also be a precursor to phenyl cation formation.

Nitrogen fixation and transformation with main group elements

Nitrogen fixation is essential for the maintenance of life and development of society, however, the large bond dissociation energy and nonpolarity of the triple bond constitute a considerable challenge. The transition metals, by virtue of their combination of empty and occupied d orbitals, are prevalent in the nitrogen fixation studies and are continuing to receive a significant focus. The main group metals have always been considered incapable in dinitrogen activation owing to the absence of energetically and symmetrically accessible orbitals. The past decades have witnessed significant breakthroughs in the dinitrogen activation with the main group elements and compounds via either matrix isolation, theoretical calculations or synthetic chemistry. The successful reactions of the low-valent species of the main group elements with inert dinitrogen have been reported via the π back-donation from either the d orbitals (Ca, Sr, Ba) or p orbitals (Be, B, C…). Herein, the significant achievements have been briefly summarized, along with predicting the future developments.

Relevance of π-Backbonding for the Reactivity of Electrophilic Anions [B12 X11 ]- (X=F, Cl, Br, I, CN)

Electrophilic anions of type [B₁₂ X₁₁ ]^- posses a vacant positive boron binding site within the anion. In a comparatitve experimental and theoretical study, the reactivity of [B₁₂ X₁₁ ]^- with X=F, Cl, Br, I, CN is characterized towards different nucleophiles: (i) noble gases (NGs) as σ-donors and (ii) CO/N₂ as σ-donor-π-acceptors. Temperature-dependent formation of [B₁₂ X₁₁ NG]^- indicates the enthalpy order (X=CN)>(X=Cl)≈(X=Br)>(X=I)≈(X=F) almost independent of the NG in good agreement with calculated trends. The observed order is explained by an interplay of the electron deficiency of the vacant boron site in [B₁₂ X₁₁ ]^- and steric effects. The binding of CO and N₂ to [B₁₂ X₁₁ ]^- is significantly stronger. The B3LYP 0 K attachment enthapies follow the order (X=F)>(X=CN)>(X=Cl)>(X=Br)>(X=I), in contrast to the NG series. The bonding motifs of [B₁₂ X₁₁ CO]^- and [B₁₂ X₁₁ N₂ ]^- were characterized using cryogenic ion trap vibrational spectroscopy by focusing on the CO and N₂ stretching frequencies ν C O and ν N 2 , respectively. Observed shifts of ν C O and ν N 2 are explained by an interplay between electrostatic effects (blue shift), due to the positive partial charge, and by π-backdonation (red shift). Energy decomposition analysis and analysis of natural orbitals for chemical valence support all conclusions based on the experimental results. This establishes a rational understanding of [B₁₂ X₁₁ ]^- reactivety dependent on the substituent X and provides first systematic data on π-backdonation from delocalized σ-electron systems of closo-borate anions.

Effective N2 capture by aryl cations at ambient temperature and pressure

Here, we show that molecular N2 was efficiently captured by organic arylium cations in a well-defined manner at ambient pressure and temperature, which was monitored by on-line mass spectrometry analysis. A kinetic picture was proposed to disclose the principle of the ion-molecule reaction behavior for exclusive aryldiazonium production. The observation has an implication for direct nitrogen fixation into an organic framework via the intermediacy of such cationic species.

Direct functionalization of C-H bonds by electrophilic anions

Alkanes and [B₁₂X₁₂]^2- (X = Cl, Br) are both stable compounds which are difficult to functionalize. Here we demonstrate the formation of a boron-carbon bond between these substances in a two-step process. Fragmentation of [B₁₂X₁₂]^2- in the gas phase generates highly reactive [B₁₂X₁₁]^- ions which spontaneously react with alkanes. The reaction mechanism was investigated using tandem mass spectrometry and gas-phase vibrational spectroscopy combined with electronic structure calculations. [B₁₂X₁₁]^- reacts by an electrophilic substitution of a proton in an alkane resulting in a B-C bond formation. The product is a dianionic [B₁₂X₁₁C_nH_2n+1]^2- species, to which H⁺ is electrostatically bound. High-flux ion soft landing was performed to codeposit [B₁₂X₁₁]^- and complex organic molecules (phthalates) in thin layers on surfaces. Molecular structure analysis of the product films revealed that C-H functionalization by [B₁₂X₁₁]^- occurred in the presence of other more reactive functional groups. This observation demonstrates the utility of highly reactive fragment ions for selective bond formation processes and may pave the way for the use of gas-phase ion chemistry for the generation of complex molecular structures in the condensed phase.

Electronic Spectrum and Photodissociation Chemistry of the 1-Butyn-3-yl Cation, H3CCHCCH. J Phys Chem A 2020;124:2366-2371. [PMID: 32119779 DOI: 10.1021/acs.jpca.9b11810]

The B̃¹A' ← X̃¹A' electronic spectra of the 1-butyn-3-yl cation (H₃CCHCCH⁺) and the H₃CCHCCH⁺-Ne and H₃CCHCCH⁺-Ar complexes are measured using resonance enhanced photodissociation over the 245-285 nm range, with origin transitions occurring at 35936, 35930, and 35928 cm^-1, respectively. Vibronic bands are assigned based on quantum chemical calculations and comparison of the spectra with those of the related linear methyl propargyl (H₃C₄H₂⁺) and propargyl (H₂C₃H⁺) cations. The photofragment ions are C₂H₃⁺ (major) and C₄H₃⁺ (minor), with the preference for C₂H₃⁺ consistent with master equation simulations for a mechanism that involves rapid electronic deactivation and dissociation on the ground state potential energy surface.

Formation of Carbon Dioxide Attached Fragment Ions in the Fragmentation of Deprotonated Tolfenpyrad and Tebufenpyrad

The in-source collision-induced dissociation (CID) and MS/MS mass spectra of deprotonated tolfenpyrad and tebufenpyrad both showed an unusual fragment ion at m/z 187, but its fragmentation pattern and structure could not be explained by logical neutral losses. Accurate mass measurement indicated that the mass difference between this fragment ion and the dominant fragment ion at m/z 143 equaled to a carbon dioxide (CO₂) molecule. The isolation of the fragment ion m/z 143 in the mass analyzer could spontaneously give rise to the ion m/z 187. The Gibbs free energy of carbon dioxide addition to deprotonated pyrazole ion was significantly negative from the computational results. According to these results, we derived a proposal for the formation and structure of the ion m/z 187, which was an attachment of molecular carbon dioxide to the fragment ion m/z 143 to produce a carboxylate anion. The trace carbon dioxide was speculated to be derived from the residual atmosphere or collision gas in the instrument. This study is valuable for the qualitative and quantitative mass spectrometry analysis of pesticides containing the pyrazole functional group.

Superelectrophilic Behavior of an Anion Demonstrated by the Spontaneous Binding of Noble Gases to [B12 Cl11 ]<sup/>

It is common and chemically intuitive to assign cations electrophilic and anions nucleophilic reactivity, respectively. Herein, we demonstrate a striking violation of this concept: The anion [B₁₂ Cl₁₁ ]^- spontaneously binds to the noble gases (Ngs) xenon and krypton at room temperature in a reaction that is typical of "superelectrophilic" dications. [B₁₂ Cl₁₁ Ng]^- adducts, with Ng binding energies of 80 to 100 kJ mol^-1 , contain B-Ng bonds with a substantial degree of covalent interaction. The electrophilic nature of the [B₁₂ Cl₁₁ ]^- anion is confirmed spectroscopically by the observation of a blue shift of the CO stretching mode in the IR spectrum of [B₁₂ Cl₁₁ CO]^- and theoretically by investigation of its electronic structure. The orientation of the electric field at the reactive site of [B₁₂ Cl₁₁ ]^- results in an energy barrier for the approach of polar molecules and facilitates the formation of Ng adducts that are not detected with reactive cations such as [C₆ H₅ ]⁺ . This introduces the new chemical concept of "dipole-discriminating electrophilic anions."

Reaction of arylium ions with the collision gas N2 in electrospray ionization mass spectrometry

RATIONALE

The tandem mass spectra of many compounds contained peaks which could not have arisen from the precursor ion. Such peaks were found to be due to reaction of arylium ions with N2 in the collision cell. Therefore, this reaction was studied in detail with representative compounds.

METHODS

Various classes of compounds were dissolved in acetonitrile/water/formic acid and studied by electrospray ionization mass spectrometry to record their MS(2) and pseudo-MS(3) spectra in a QqQ mass spectrometer and their accurate m/z values in an Orbitrap Elite instrument. Arylium ions were found to react with N2 in the collision cell. The reaction was confirmed by pseudo-MS(3) studies, by comparison with authentic diazonium ions, and by the pressure dependence of the product ion survival yield.

RESULTS

Reactions of arylium ions with N2 were observed with p-toluenesulfonic acid, o-toluenesulfonamide, phenylphosphonic acid, phenol, aniline, aminonaphthalenes, benzoic acid, benzophenone, and other compounds. By using a QqQ mass spectrometer, we observed that the protonated compounds produce arylium ions, which then react with N2 to form diazonium ions. The diazonium ion was produced with N2 but not with Ar in the collision cell, and its abundance increased with increasing N2 pressure.

CONCLUSIONS

Arylium ions generated from a wide variety of compounds in electrospray ionization tandem mass spectrometry may react with N2 to form diazonium ions. The abundance of the diazonium ions is affected by collision energy and N2 pressure. This reaction should be considered when annotating peaks in MS/MS libraries. Published in 2015. This article is a U.S. Government work and is in the public domain in the USA.

Analysis of polycyclic aromatic hydrocarbons using desorption atmospheric pressure chemical ionization coupled to a portable mass spectrometer

Desorption atmospheric pressure chemical ionization (DAPCI) is implemented on a portable mass spectrometer and applied to the direct detection of polycyclic aromatic hydrocarbons (PAHs) and alkyl substituted benzenes. The presence of these compounds in the environment poses a significant threat to the health of both humans and wildlife because of their carcinogenic, toxic, and mutagenic properties. As such, instant detection outside of the laboratory is of particular importance to allow in-situ measurement at the source. Using a rapid, high throughput, miniature, handheld mass spectrometer, several alkyl substituted benzenes and PAHs (i.e., 1,2,3,5-tetramethylbenzene, pentamethylbenzene, hexamethylbenzene, fluoranthene, anthracene, benzo[k]fluoranthene, dibenz[a,h]anthracene, acenaphthene, indeno[1,2,3-c,d]pyrene, 9-ethylfluorene, and 1-benzyl-3-methyl-naphthalene) were identified and characterized using tandem mass spectrometry (MS/MS) from ambient surfaces, in the open air. This method can provide almost instantaneous information while minimizing sample preparation, which is advantageous in terms of both cost and simplicity of analysis. This MS-based technique is applicable to a wide range of environmental organic molecules.

Mass spectrometry in the home and garden

Identification of active components in a variety of chemical products used directly by consumers is described at both trace and bulk levels using mass spectrometry. The combination of external ambient ionization with a portable mass spectrometer capable of tandem mass spectrometry provides high chemical specificity and sensitivity as well as allowing on-site monitoring. These experiments were done using a custom-built portable ion trap mass spectrometer in combination with the ambient ionization methods of paper spray, leaf spray, and low temperature plasma ionization. Bactericides, garden chemicals, air fresheners, and other products were examined. Herbicide applied to suburban lawns was detected in situ on single leaves 5 d after application.

Theoretical studies on the pyrolysis of (Thion)carbonates

MP2/6-31G(d) was employed to investigate the theoretical calculations on the pyrolysis of alkyl methyl (thion)carbonates, where alkyl groups referred to ethyl, isopropyl and t-butyl groups. Nine possible pathways were considered for the pyrolysis of alkyl methyl thioncarbonates, while only seven possible pathways were found to pyrolyze alkyl methyl carbonates. Both of them had three pathways to generate the desired alkene products. Not only thermal elimination pathways were calculated, other possible mechanisms, such as rearrangements and nucleophilic substitutions, were also considered. The progress of the reactions was also investigated by the calculation of Wiberg bond indices at MP2/6-31G(d) level.