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Phetlum S, Champasri C. Purification and characterization of amylases from three freshwater fish species providing new insight application as enzyme molecular markers for zymography. FISH PHYSIOLOGY AND BIOCHEMISTRY 2023; 49:1257-1276. [PMID: 37889390 DOI: 10.1007/s10695-023-01255-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Accepted: 10/12/2023] [Indexed: 10/28/2023]
Abstract
Purification of amylases from digestive tracts of three freshwater fish species with Q-Sepharose Fast Flow and Sephacryl S-200 columns displayed two isoforms of amylases from Osteochilus hasselti (O1, O2) and three isoforms of those from both Hampala dispar (UB, H1, H2) and Puntioplites proctozystron (P1, P2, P3). The optimum pH values displayed at 7.0 and 8.0, while the optimum temperatures revealed at 40 and 50 °C. Almost isoenzyme activities were activated by NaCl and CaCl2, whereas EDTA and SDS strongly inhibited all enzymatic activities. Verification with an atomic absorption spectrophotometry exhibited the presence of Ca2+ ions in the range of 0.02-13.53 ppm per mg protein indicating that amylases are Ca2+ dependent. Molecular weight analysis revealed 12 to 147 kDa. The UB, O1, and H2 amylases with appropriate molecular masses of 64, 49, and 25 kDa validated with LC-MS/MS were selected. Three certain enzymes revealed high stability in a sample buffer after five cycles of freeze-thawing process upon storage at - 20 °C for 12 weeks. No protein degradation was observed on polyacrylamide gel, and the enzymes still displayed sharp and clear bands on zymograms. The result suggested that the purified fish amylases, which expressed high activities and stabilities, were potentially used as enzyme molecular weight markers for zymography.
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Affiliation(s)
- Suthathip Phetlum
- Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen, 40002, Thailand
| | - Chamaiporn Champasri
- Department of Biochemistry, Faculty of Science, Khon Kaen University, Khon Kaen, 40002, Thailand.
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Enhanced starch hydrolysis by α-amylase using copper oxide nanowires. APPLIED NANOSCIENCE 2021. [DOI: 10.1007/s13204-021-01931-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Debnath S, Saikia SK. Absorption of protein in teleosts: a review. FISH PHYSIOLOGY AND BIOCHEMISTRY 2021; 47:313-326. [PMID: 33405061 DOI: 10.1007/s10695-020-00913-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 12/01/2020] [Indexed: 06/12/2023]
Abstract
Teleost is a widely diverse group of fishes and so do their feeding habits. From aquaculture points of view, there have been un-interrupted efforts to optimize feeding rates with protein as the chief ingredients in the supplementary diet. However, knowledge on its protein absorption is incomplete so far, to acquire absolute feeding design to mobilize enhanced production of animal-source protein as fish biomass. In this review, the variable protein absorption across digestive tract (DT) in this group of fish has been highlighted. Emphasis is given to outline how DT components, like enterocyte specific absorptive mechanisms, are different in anterior and posterior regions of DT or from the absorptive transporter system. The existence of a transporter-based absorption mechanism brings more variability in the protein absorption in teleosts. At least two such transport systems (Na+-dependent and Na+-independent) with within-system differences impart more variability to protein absorption. Further, shifting from one stage to another stage of development involves considerable modification of the protein absorptive mechanism in teleosts. Gut microbes may also indirectly facilitate protein absorption in teleosts. Overall, the present review projects a comprehensive understanding of the protein absorption in teleosts that will help to strategize the modulation of feeding technology in fish culture.
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Affiliation(s)
- Sanjeet Debnath
- Aquatic Ecology and Fish Biology Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal, 731235, India
| | - Surjya Kumar Saikia
- Aquatic Ecology and Fish Biology Laboratory, Department of Zoology, Visva-Bharati University, Santiniketan, West Bengal, 731235, India.
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A Novel Digestive α-Amylase from Blue Crab ( Portunus segnis) Viscera: Purification, Biochemical Characterization and Application for the Improvement of Antioxidant Potential of Oat Flour. Int J Mol Sci 2021; 22:ijms22031070. [PMID: 33499004 PMCID: PMC7865747 DOI: 10.3390/ijms22031070] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 01/15/2021] [Accepted: 01/15/2021] [Indexed: 12/26/2022] Open
Abstract
This study reports on the purification and characterization of a digestive α-amylase from blue crab (Portunussegnis) viscera designated Blue Crab Amylase (BCA). The enzyme was purified to homogeneity by ultrafiltration, Sephadex G-100 gel filtration and Sepharose mono Q anion exchange chromatography, with the final purification fold of 424.02, specific activity of 1390.8 U mg−1 and 27.8% recovery. BCA, showing a molecular weight of approximately 45 kDa, possesses desirable biotechnological features, such as optimal temperature of 50 °C, interesting thermal stability which is enhanced in the presence of starch, high stability towards surfactants (Tween 20, Tween 80 and Triton X-100), high specific activity, quite high storage and broad pH range stability. The enzyme displayed Km and Vmax values, of 7.5 ± 0.25 mg mL−1 and 2000 ± 23 μmol min−1 mg−1 for potato starch, respectively. It hydrolyzed various carbohydrates and produced maltose, maltotriose and maltotetraose as the major end products of starch hydrolysis. In addition, the purified enzyme was successfully utilized for the improvement of the antioxidant potential of oat flour, which could be extended to other cereals. Interestingly, besides its suitability for application in different industrial sectors, especially food industries, the biochemical properties of BCA from the blue crab viscera provide novel features with other marine-derived enzymes and better understanding of the biodegradability of carbohydrates in marine environments, particularly in invasive alien crustaceans.
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Hossain TJ, Chowdhury SI, Mozumder HA, Chowdhury MNA, Ali F, Rahman N, Dey S. Hydrolytic Exoenzymes Produced by Bacteria Isolated and Identified From the Gastrointestinal Tract of Bombay Duck. Front Microbiol 2020; 11:2097. [PMID: 32983064 PMCID: PMC7479992 DOI: 10.3389/fmicb.2020.02097] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 08/10/2020] [Indexed: 12/13/2022] Open
Abstract
Bacteria producing hydrolytic exoenzymes are of great importance considering their contribution to the host metabolism as well as for their various applications in industrial bioprocesses. In this work hydrolytic capacity of bacteria isolated from the gastrointestinal tract of Bombay duck (Harpadon nehereus) was analyzed and the enzyme-producing bacteria were genetically characterized. A total of twenty gut-associated bacteria, classified into seventeen different species, were isolated and screened for the production of protease, lipase, pectinase, cellulase and amylase enzymes. It was found that thirteen of the isolates could produce at least one of these hydrolytic enzymes among which protease was the most common enzyme detected in ten isolates; lipase in nine, pectinase in four, and cellulase and amylase in one isolate each. This enzymatic array strongly correlated to the previously reported eating behavior of Bombay duck. 16S rRNA gene sequence-based taxonomic classification of the enzyme-producing isolates revealed that the thirteen isolates were grouped into three different classes of bacteria consisting of eight different genera. Staphylococcus, representing ∼46% of the isolates, was the most dominant genus. Measurement of enzyme-production via agar diffusion technique revealed that one of the isolates which belonged to the genus Exiguobacterium, secreted the highest amount of lipolytic and pectinolytic enzymes, whereas a Staphylococcus species produced highest proteolytic activity. The Exiguobacterium sp. expressing a maximum of four hydrolases, appeared to be the most promising isolate of all.
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Affiliation(s)
- Tanim J. Hossain
- Department of Biochemistry and Molecular Biology, University of Chittagong, Chattogram, Bangladesh
| | - Sumaiya I. Chowdhury
- Department of Biochemistry and Molecular Biology, University of Chittagong, Chattogram, Bangladesh
| | - Halima A. Mozumder
- Department of Biochemistry and Molecular Biology, University of Chittagong, Chattogram, Bangladesh
| | - Mohammad N. A. Chowdhury
- Department of Biochemistry and Molecular Biology, University of Chittagong, Chattogram, Bangladesh
| | - Ferdausi Ali
- Department of Microbiology, University of Chittagong, Chattogram, Bangladesh
| | - Nabila Rahman
- Department of Biology, Chittagong Sunshine College, Chattogram, Bangladesh
| | - Sujan Dey
- Department of Microbiology, University of Chittagong, Chattogram, Bangladesh
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Gimenes NC, Silveira E, Tambourgi EB. An Overview of Proteases: Production, Downstream Processes and Industrial Applications. SEPARATION & PURIFICATION REVIEWS 2019. [DOI: 10.1080/15422119.2019.1677249] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
| | - Edgar Silveira
- Biotechnology Institute, Federal University of Uberlandia, Uberlandia, Minas Gerais, Brazil
- Brazilian Savanna’s, Diversity Research Center, Federal University of Uberlandia, Uberlandia, Minas Gerais, Brazil
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Shaikh I, Dixit P, Shaikh T. Purification and characterization of alkaline soda-bleach stable protease from Bacillus sp. APP-07 isolated from Laundromat soil. J Genet Eng Biotechnol 2018; 16:273-279. [PMID: 30733735 PMCID: PMC6353777 DOI: 10.1016/j.jgeb.2018.07.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2018] [Revised: 07/13/2018] [Accepted: 07/16/2018] [Indexed: 11/22/2022]
Abstract
The detergent-compatible alkaline protease was produced from the bacterial strain Bacillus sp. APP-07 isolated from Laundromat soil of Solapur, Maharashtra, India. The culture was grown in 1000 ml capacity baffled flask with a working volume of 100 ml and incubated at 55 °C for 33 h on a rotary shaker. After incubation, alkaline protease was partially purified by the sequential method of acetone precipitation followed by nominal molecular weight limit (NMWL) cut-off ultrafiltration using 50 K and 10 K filters. Finally, Sephadex G-100 gel filtration chromatographic purification was performed to obtain 3.12 fold purified alkaline protease enzyme with a 66.67% final yield. The purified enzyme showed 31907.269 units (U) of enzyme activity containing 8741.718 U/mg of specific enzyme activity. The molecular weight of the enzyme was confirmed about 33.0 kDa (kDa) by the SDS-PAGE analysis. The purified enzyme was stable at higher pH and temperature range, with an optimum pH 10.5 and temperature 55 °C. The enzyme showed excellent stability and compatibility in various detergents, surfactants, bleach, and oxidizing agents. The enzyme activity enhanced in the presence of Ca2+, Cu2+, and surfactants, whereas; the phenylmethylsulphonyl fluoride (PMSF) and Diisopropyl fluorophosphate (DFP) completely inhibit the enzymatic activity, which pointed out that the enzyme affiliated to serine-centered metalloproteases family. In conclusion, the remarkable tolerance and stability of the enzyme explored the promising candidature for the several potential applications in the laundry detergents. The sustainability of the enzyme might serve several possible applications in the laundry detergents, leather industries, and other harsh industrial processes.
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Affiliation(s)
- I.K. Shaikh
- Department of Microbiology, Dr. Babasaheb Ambedkar Marathwada University, Sub Campus, Osmanabad, India
- Deparment of Antitoxin and Sera, Haffkine Biopharmaceutical Corporation Limited, Pune, India
| | - P.P. Dixit
- Department of Microbiology, Dr. Babasaheb Ambedkar Marathwada University, Sub Campus, Osmanabad, India
| | - T.M. Shaikh
- Deparment of Antitoxin and Sera, Haffkine Biopharmaceutical Corporation Limited, Pune, India
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Ramírez C, Coronado J, Silva A, Romero J. Cetobacterium Is a Major Component of the Microbiome of Giant Amazonian Fish ( Arapaima gigas) in Ecuador. Animals (Basel) 2018; 8:ani8110189. [PMID: 30352962 PMCID: PMC6262583 DOI: 10.3390/ani8110189] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 09/03/2018] [Accepted: 09/15/2018] [Indexed: 01/16/2023] Open
Abstract
Simple Summary Arapaima gigas is a large, air-breathing, giant fish found in Amazonian rivers, a characteristic that gives this species an advantage in oxygen-deprived waters. It has a very attractive potential for aquaculture in the Amazon region due to its many advantages, including a fast growth rate that approaches 10–15 kg/year. Here, we describe the gut microbiome of Arapaima to understand the potential contribution of this bacterial community to the growth of this fish. Abstract Arapaima gigas is a large air-breathing fish found in Amazonian rivers, a characteristic that gives this species an advantage in oxygen-deprived waters. It shows high potential for aquaculture in the Amazon region due to its fast growth rate that approaches 10–15 kg/year. The aim of this study was to explore the composition of the intestinal bacterial community of Arapaima gigas reared in Ecuador using 16S rRNA gene high-throughput sequencing. The analysis revealed significant differences in alpha diversity indices (p < 0.05) and differential distribution of minor components of the intestinal microbiome between small and large fish. However, components with greater relative abundance, such as Cetobacterium, are found in similar proportions.
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Affiliation(s)
- Carolina Ramírez
- Laboratorio de Biotecnología, Unidad de Alimentos, Instituto de Nutrición y Tecnología de los Alimentos (INTA), Universidad de Chile, Avda. El Líbano 5524, Santiago, RM, Chile.
| | - Jaime Coronado
- Laboratorio de Biotecnología, Unidad de Alimentos, Instituto de Nutrición y Tecnología de los Alimentos (INTA), Universidad de Chile, Avda. El Líbano 5524, Santiago, RM, Chile.
| | - Arturo Silva
- Acuatilsa, 9 de octubre, El Puyo, Pastaza 160150, Ecuador.
| | - Jaime Romero
- Laboratorio de Biotecnología, Unidad de Alimentos, Instituto de Nutrición y Tecnología de los Alimentos (INTA), Universidad de Chile, Avda. El Líbano 5524, Santiago, RM, Chile.
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Banerjee G, Ray AK. Impact of microbial proteases on biotechnological industries. Biotechnol Genet Eng Rev 2017; 33:119-143. [DOI: 10.1080/02648725.2017.1408256] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Goutam Banerjee
- Department of Zoology, Visva-Bharati University, Santiniketan, India
- Department of Biochemistry, University of Calcutta, Kolkata, India
| | - Arun Kumar Ray
- Department of Zoology, Visva-Bharati University, Santiniketan, India
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