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Martínez-Pascual R, Valera-Zaragoza M, Fernández-Bolaños JG, López Ó. Exploring the Chemistry and Applications of Thio-, Seleno-, and Tellurosugars. Molecules 2025; 30:2053. [PMID: 40363858 PMCID: PMC12073459 DOI: 10.3390/molecules30092053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2025] [Revised: 04/28/2025] [Accepted: 04/28/2025] [Indexed: 05/15/2025] Open
Abstract
Given the crucial roles of carbohydrates in energy supply, biochemical processes, signaling events and the pathogenesis of several diseases, the development of carbohydrate analogues, called glycomimetics, is a key research area in Glycobiology, Pharmacology, and Medicinal Chemistry. Among the many structural transformations explored, the replacement of endo- and exocyclic oxygen atoms by carbon (carbasugars) or heteroatoms, such as nitrogen (aza- and iminosugars), phosphorous (phosphasugars), sulfur (thiosugars), selenium (selenosugars) or tellurium (tellurosugars) have garnered significant attention. These isosteric substitutions can modulate the carbohydrate bioavailability, stability, and bioactivity, while introducing new properties, such as redox activity, interactions with pathological lectins and enzymes, or cytotoxic effects. In this manuscript we have focused on three major families of glycomimetics: thio-, seleno-, and tellurosugars. We provide a comprehensive review of the most relevant synthetic pathways leading to substitutions primarily at the endocyclic and glycosidic positions. The scope includes metal-catalyzed reactions, organocatalysis, electro- and photochemical transformations, free-radical processes, and automated syntheses. Additionally, mechanistic insights, stereoselectivity, and biological properties are also discussed. The structural diversity and promising bioactivities of these glycomimetics underscore their significance in this research area.
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Affiliation(s)
- Roxana Martínez-Pascual
- Centro de Investigaciones Científicas, Instituto de Química Aplicada, Universidad del Papaloapan, Circuito Central 200, Col. Parque Industrial, Tuxtepec 68301, Oaxaca, Mexico; (R.M.-P.); (M.V.-Z.)
| | - Mario Valera-Zaragoza
- Centro de Investigaciones Científicas, Instituto de Química Aplicada, Universidad del Papaloapan, Circuito Central 200, Col. Parque Industrial, Tuxtepec 68301, Oaxaca, Mexico; (R.M.-P.); (M.V.-Z.)
| | - José G. Fernández-Bolaños
- Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, Apartado 1203, E-41071 Seville, Spain;
| | - Óscar López
- Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, Apartado 1203, E-41071 Seville, Spain;
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Bayer T, Wu S, Snajdrova R, Baldenius K, Bornscheuer UT. An Update: Enzymatic Synthesis for Industrial Applications. Angew Chem Int Ed Engl 2025:e202505976. [PMID: 40241335 DOI: 10.1002/anie.202505976] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2025] [Revised: 04/08/2025] [Accepted: 04/09/2025] [Indexed: 04/18/2025]
Abstract
Supported by rapid technological advancements, biocatalytic applications have matured into sustainable, scalable, and cost-competitive alternatives to established chemical catalysis. This review presents the most recent examples of enzyme-based solutions for the manufacturing of molecules with extended carbon-carbon frameworks and multiple stereogenic centers at commercial scale, including peptide building blocks, (rare) sugars, synthetic (oligo)nucleotides, and terpenoids, such as (-)-Ambrox®. Novel enzyme classes are highlighted along with their potential applications-the synthesis of DNA/RNA, the depolymerization of synthetic plastics, or fully enzymatic protection/deprotection schemes-pointing toward the diversification and broader industrial utilization of biocatalysis-based processes.
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Affiliation(s)
- Thomas Bayer
- Institute of Biochemistry, Dept. of Biotechnology & Enzyme Catalysis, Greifswald University, Felix-Hausdorff-Str. 4, 17487, Greifswald, Germany
| | - Shuke Wu
- National Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, 1 Shizishan Street, Wuhan, 430070, P.R. China
| | - Radka Snajdrova
- Novartis Institutes for BioMedical Research, Global Discovery Chemistry, Basel, 4056, Switzerland
| | - Kai Baldenius
- Baldenius Biotech Consulting, Hafenstr. 31, 68159, Mannheim, Germany
| | - Uwe T Bornscheuer
- Institute of Biochemistry, Dept. of Biotechnology & Enzyme Catalysis, Greifswald University, Felix-Hausdorff-Str. 4, 17487, Greifswald, Germany
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Silkenath B, Kläge D, Eppelin P, Hartig JS, Wittmann V. Diverse Library of 5a-Substituted Carba-Glucosamines. J Org Chem 2025; 90:2969-2977. [PMID: 39954263 PMCID: PMC11877516 DOI: 10.1021/acs.joc.4c02816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2024] [Revised: 01/29/2025] [Accepted: 02/06/2025] [Indexed: 02/17/2025]
Abstract
Carba-sugars─carbohydrate mimics in which the ring oxygen is replaced by a methylene group─are carbohydrate analogues of natural or synthetic origin that can have important biological functions. Especially, carba-aminosugars and glycosides containing carba-aminosugars are potent antibiotics. Furthermore, they have been shown to induce the self-cleavage reaction of the glmS riboswitch and thereby inhibit the ability of bacteria to synthesize glucosamine-6-phosphate, which is required to build up the bacterial cell wall. We report the synthesis of a library of 20 carba-glucosamine derivatives with various substituents at the carba-position including amines, alkyl, alkoxy, and aryloxy derivatives, fluorine derivatives, glycosylated derivatives, and a cyclopropane derivative. The compounds were obtained in an efficient way starting from late-stage synthetic intermediates of an earlier-developed synthesis of carba-substituted carba-glucosamines. All carba-glucosamine mimics were tested for their antibacterial properties against Bacillus subtilis, and some of them displayed promising activities in a filter disk assay.
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Affiliation(s)
- Bjarne Silkenath
- Department of Chemistry, University of Konstanz, 78457 Konstanz, Germany
| | - Dennis Kläge
- Department of Chemistry, University of Konstanz, 78457 Konstanz, Germany
| | - Philip Eppelin
- Department of Chemistry, University of Konstanz, 78457 Konstanz, Germany
| | - Jörg S. Hartig
- Department of Chemistry, University of Konstanz, 78457 Konstanz, Germany
| | - Valentin Wittmann
- Department of Chemistry, University of Konstanz, 78457 Konstanz, Germany
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Banachowicz P, Buda S. General strategy for the synthesis of unsaturated carbasugars via a diastereoselective seleno-Michael/aldol reaction. RSC Adv 2025; 15:5159-5166. [PMID: 39967888 PMCID: PMC11833443 DOI: 10.1039/d5ra00322a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Accepted: 02/06/2025] [Indexed: 02/20/2025] Open
Abstract
Carbasugars are a diverse group of carbohydrate mimetics in which the ring oxygen is replaced by a methylene group. We have developed a simple and efficient carbasugar synthesis from d-aldopentoses via temporary protection of the hydroxyl moieties with TMS groups followed by consecutive intramolecular tandem Michael/aldol cyclisation. It is important to note that only the n-butylselenolate nucleophile is compatible with per-O-TMS-protected substrates. The desired products were obtained in five steps, with total yields reaching up to 40% with excellent diastereoselectivity of up to 19 : 1.
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Affiliation(s)
| | - Szymon Buda
- Faculty of Chemistry, Jagiellonian University Kraków 30-387 Poland
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Riester O, Burkhardtsmaier P, Gurung Y, Laufer S, Deigner HP, Schmidt MS. Synergy of R-(-)carvone and cyclohexenone-based carbasugar precursors with antibiotics to enhance antibiotic potency and inhibit biofilm formation. Sci Rep 2022; 12:18019. [PMID: 36289389 PMCID: PMC9606123 DOI: 10.1038/s41598-022-22807-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 10/19/2022] [Indexed: 01/24/2023] Open
Abstract
The widespread use of antibiotics in recent decades has been a major factor in the emergence of antibiotic resistances. Antibiotic-resistant pathogens pose increasing challenges to healthcare systems in both developing and developed countries. To counteract this, the development of new antibiotics or adjuvants to combat existing resistance to antibiotics is crucial. Glycomimetics, for example carbasugars, offer high potential as adjuvants, as they can inhibit metabolic pathways or biofilm formation due to their similarity to natural substrates. Here, we demonstrate the synthesis of carbasugar precursors (CSPs) and their application as biofilm inhibitors for E. coli and MRSA, as well as their synergistic effect in combination with antibiotics to circumvent biofilm-induced antibiotic resistances. This results in a biofilm reduction of up to 70% for the CSP rac-7 and a reduction in bacterial viability of MRSA by approximately 45% when combined with the otherwise ineffective antibiotic mixture of penicillin and streptomycin.
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Affiliation(s)
- Oliver Riester
- grid.21051.370000 0001 0601 6589Institute of Precision Medicine, Furtwangen University, Jakob-Kienzle-Strasse 17, 78054 Villingen-Schwenningen, Germany ,grid.10392.390000 0001 2190 1447Institute of Pharmaceutical Sciences, Department of Pharmacy and Biochemistry, Eberhard-Karls-University Tuebingen, Auf Der Morgenstelle 8, 72076 Tübingen, Germany
| | - Pia Burkhardtsmaier
- grid.21051.370000 0001 0601 6589Institute of Precision Medicine, Furtwangen University, Jakob-Kienzle-Strasse 17, 78054 Villingen-Schwenningen, Germany
| | - Yuna Gurung
- grid.21051.370000 0001 0601 6589Institute of Precision Medicine, Furtwangen University, Jakob-Kienzle-Strasse 17, 78054 Villingen-Schwenningen, Germany
| | - Stefan Laufer
- grid.10392.390000 0001 2190 1447Institute of Pharmaceutical Sciences, Department of Pharmacy and Biochemistry, Eberhard-Karls-University Tuebingen, Auf Der Morgenstelle 8, 72076 Tübingen, Germany ,Tuebingen Center for Academic Drug Discovery and Development (TüCAD2), 72076 Tübingen, Germany
| | - Hans-Peter Deigner
- grid.21051.370000 0001 0601 6589Institute of Precision Medicine, Furtwangen University, Jakob-Kienzle-Strasse 17, 78054 Villingen-Schwenningen, Germany ,grid.10392.390000 0001 2190 1447Faculty of Science, Eberhard-Karls-University Tuebingen, Auf Der Morgenstelle 8, 72076 Tübingen, Germany ,grid.418008.50000 0004 0494 3022EXIM Department, Fraunhofer Institute IZI (Leipzig), Schillingallee 68, 18057 Rostock, Germany
| | - Magnus S. Schmidt
- grid.21051.370000 0001 0601 6589Institute of Precision Medicine, Furtwangen University, Jakob-Kienzle-Strasse 17, 78054 Villingen-Schwenningen, Germany
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Hans SK, Truong S, Mootoo DR. Oxocarbenium ion cyclizations for the synthesis of disaccharide mimetics of 2-amino-2-deoxy-pyranosides: Application to the carbasugar of β-galactosamine-(1,4)-3-O-methyl-D-chiro-inositol. Carbohydr Res 2022; 518:108595. [DOI: 10.1016/j.carres.2022.108595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 05/14/2022] [Accepted: 05/16/2022] [Indexed: 11/30/2022]
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