Identification of glycerophosphorylcholine in mussel ovarian extracts by two-dimensional nuclear magnetic resonance

NMR-based stable isotope resolved metabolomics in systems biochemistry

An important goal of metabolomics is to characterize the changes in metabolic networks in cells or various tissues of an organism in response to external perturbations or pathologies. The profiling of metabolites and their steady state concentrations does not directly provide information regarding the architecture and fluxes through metabolic networks. This requires tracer approaches. NMR is especially powerful as it can be used not only to identify and quantify metabolites in an unfractionated mixture such as biofluids or crude cell/tissue extracts, but also determine the positional isotopomer distributions of metabolites derived from a precursor enriched in stable isotopes such as (13)C and (15)N via metabolic transformations. In this article we demonstrate the application of a variety of 2-D NMR editing experiments to define the positional isotopomers of compounds present in polar and non-polar extracts of human lung cancer cells grown in either [U-(13)C]-glucose or [U-(13)C,(15)N]-glutamine as source tracers. The information provided by such experiments enabled unambiguous reconstruction of metabolic pathways, which is the foundation for further metabolic flux modeling.

Distribution and potential role of cytosolic water-soluble phosphodiesters in fish

The distribution of water-soluble phosphodiesters (WSPDEs) visible by nuclear magnetic resonance (NMR) in some intact tissues of rainbow trout (Oncorhynchus mykiss walbaum) and in perchloric extracts after partial purification was examined by (31)P NMR spectroscopy. The compounds of interest were serine ethanolamine phosphate (SEP), threonine ethanolamine phosphate (TEP), glycerophosphorylcholine (GPC), and glycerophosphorylethanolamine (GPE). TEP and SEP were mostly accumulated in the heart and less accumulated in the kidney of intact trout. After the extraction procedure, two additional minor resonances were visible and identified as GPC and GPE. The liver of trout contained large amounts of GPE. Similar investigations were conducted by (31)P NMR on hearts and kidneys of two elasmobranchs (Scyliorhinus canicula, Raja clavata) and four teleosts (Anguilla anguilla, Sparus auratus, Dicentrarchus labrax, Scophtlhalmus maximus); comparison with the trout data showed striking interspecies differences in the identity of WSPDEs. All teleosts, except eel and turbot, accumulated predominantly TEP. However, in elasmobranchs, first GPC and then GPE were the major compounds. Whatever the studied species, the relative abundances in the heart and kidney were similar. In the last two decades, two hypotheses were proposed to explain the occurrence of high levels of cytosoluble phosphodiesters: these compounds may constitute an index of phospholipid catabolism or a protective mechanism through which phospholipid levels are kept high. To test them and elucidate the role of these compounds in membrane phospholipid regulation in fish, we investigated the effects of two physiological stresses, that is, seawater adaptation and induced myocardial ischemia, on trout cytosolic phosphodiester levels. A 32.5-min ischemic stress caused no effect on SEP and TEP levels. On the contrary, significant osmotic stress induced changes in the PDEs levels: 2 d after transfer from freshwater to seawater or from seawater to freshwater, both tissues displayed a transient decrease of TEP; however, a 2-d stay in seawater after transfer from freshwater caused a rise in SEP concentration, whereas a 2-d stay in freshwater after transfer decreased SEP level. In conclusion, our experiments suggest a relationship between the high levels of cytosoluble phosphodiesters observed in some fish tissues and resistance to stress.

Analysis of phosphorylated metabolites in crayfish extracts by two-dimensional 1H-31P NMR heteronuclear total correlation spectroscopy (heteroTOCSY)

In vivo and extract analyses by one-dimensional 31P NMR have been a key tool in investigating energy-related metabolism. Although many phosphorylated metabolites have been observed, many of them have yet to be identified. This reflects the difficulty in identifying them using 31P NMR alone. Two-dimensional 1H-31P correlation experiments have been shown to be useful for assigning phosphorylated metabolites. To obtain better sensitivity and structure information, 1H-detected 31P-1H heteronuclear total correlation spectroscopy (heteroTOCSY) was implemented and a complete chemical shift assignment for a number of phosphorylated standards was made. The time courses of 1D heteroTOCSY signal intensity versus spin-locking time were established for these standards to aid the optimization of the 2D experiment. This method was applied to crayfish extracts for the assignment of glucose 6-phosphate, alpha-glycerophosphate, ribose 5-phosphate, fructose 1,6-bisphosphate, phosphocholine, phosphoethanolamine, glucose 1-phosphate, glycerophosphoethanolamine, glycerophosphocholine, ATP, ADP, and AMP. An alkyl phosphate, a hexose 1-phosphate, and a UDP-hexose were also observed. These assignments allowed the identification of many changes in the 31P NMR spectra of crayfish extracts elicited by treatment with the organophosphate pesticide chlorpyrifos. The assignment of an in vivo 31P spectrum of a live crayfish was also made based on the extract assignment. This approach should be a powerful tool for examining stress-associated changes in the metabolism of phosphorylated compounds.