Etude par spectrométrie infrarouge de l'interaction entre le N,N-diméthylacétamide et les phénols

Structural and spectroscopic characterization of DMF complexes with nitrogen, carbon monoxide, ammonia and water. Infrared matrix isolation and theoretical studies [corrected]

An infrared spectroscopic and MP2/6-311++G(2d,2p) study of the complexes between N,N-dimethylformamide (DMF) and nitrogen, carbon monoxide, water, ammonia trapped in solid argon matrices is reported [corrected]. The 1:1 molecular complexes have been identified in the DMF/B/Ar matrices (B=N₂, CO, H₂O, NH₃); their structures were determined by comparison of the spectra with the results of calculations. The analysis of the experimental and theoretical data indicate that the DMF-N₂, CO complexes present in the matrices are stabilized by (C=)O⋯N and (C=)O⋯C van der Waals interactions. In turn, in the DMF-H₂O, NH₃ complexes the (C=)O⋯H(OH) and (C=)O⋯H(NH₂) hydrogen bonding is present in which the carbonyl group of DMF acts as a proton acceptor. In all systems studied the C-H⋯X (X=N, C, O) bonding is a second intermolecular force stabilizing the planar complexes. Some spectral features indicate that for DMF-H₂O, DMF-NH₃ systems the nonplanar structures with the C=O⋯H interaction are also present. The study demonstrated the strong sensitivity of the CH stretching wavenumber to an involvement of the C-H and/or C=O groups of DMF in an intermolecular interaction.

Theoretical vibrational analysis of monohalogenated phenols

Harmonic vibrational frequencies of a representative series of X-phenols (X = F, Cl, Br) in ortho, meta and para positions are determined using density functional theory (B3LYP) in conjunction with 6-311 + + G(d,p), 6-311 + + G(2d,2p), and 6-311 + + G(2df,2p) basis sets. Their complete and clear-cut vibrational assignment based on the concept of the potential energy distribution is carried out. Such assignment allows to resolve a number of uncertainties appeared in the previous studies and to propose a new explanation of frequency alterations of particular vibrational modes in this series.

Theoretical and Experimental (400-10 000 cm-1) Study of the Vibrational Spectrum of Pentachlorophenol

Geometric and vibrational spectroscopic data (bond distances and angles, vibrational frequencies, infrared intensities) of pentachlorophenol-OH (PCP-OH) and pentachlorophenol-OD (PCP-OD) are calculated by density functional theory (B3LYP) using the 6-311G(d, p) basis set. Except for the vibrations involving the OH bond, the agreement between the experimental and calculated fundamental frequencies between 3600 and 400 cm-1 is very good. The theoretical method failed, however, to reproduce quantitatively the experimental intensities. The infrared spectra between 3600 and 10 000 cm-1 are studied, and the overtones or combination bands are assigned by comparing the spectra of PCP-OH and PCP-OD. The difference between the experimental and theoretical frequencies of the nu(OH) and nu(OD) frequencies can be mainly accounted for by the neglect of the anharmonicities of these vibrations in calculations. The binary or ternary combinations characterized by the highest coupling constants and the highest intensities are those involving the nu(OH), delta(OH), gamma(OH), and nu(C-O) vibrations. Copyright 1999 Academic Press.

Fourier transform infrared difference spectroscopy of photosystem II tyrosine D using site-directed mutagenesis and specific isotope labeling

Tyrosine D (TyrD), a side path electron carrier of photosystem II (PS II), has been studied by light-induced Fourier transform infrared (FTIR) difference spectroscopy in PS II core complexes of Synechocystis sp. PCC 6803 using the experimental conditions previously optimized to generate the pure TyrD./TyrD FTIR difference spectrum in PS II-enriched membranes of spinach [Hienerwadel, R., Boussac, A., Breton, J., and Berthomieu, C. (1996) Biochemistry 35, 115447-115460]. IR modes of TyrD and TyrD. have been identified by specific 2H- or 13C-labeling of the tyrosine side chains. The v8a(CC) and v19(CC) IR modes of TyrD are identified at 1615 and 1513-1510 cm-1, respectively. These frequencies show that TyrD is protonated. Comparison of isotope-sensitive signals in situ with those of the model compound p-methylphenol dissolved in different solvents leads to the assignment of the v7'a(CO) and delta(COH) modes of TyrD at 1275 and 1250 cm-1, respectively. It is shown that these modes and in particular the delta(COH) IR mode are very sensitive to the formation of hydrogen-bonded complexes with amide C=O or with imidazole nitrogen atoms. The frequencies observed in situ show that TyrD is hydrogen-bonded to the imidazole ring of a neutral histidine. For the radical TyrD., isotope-sensitive IR modes are identified at 1532 and 1503 cm-1. The signal at 1503 cm-1 is assigned to the v(CO) mode of TyrD. since it is sensitive to 13C-labeling at the ring carbon involved in the C4-O bond. The perturbation of TyrD and TyrD. IR modes upon site-directed replacement of D2-His189 by Gln confirms that a hydrogen bond exists between both TyrD and TyrD. and D2-His189. In the D2-His189Gln mutant, the v7'a(CO) mode of TyrD at 1267 cm-1 and the delta(COH) mode at approximately 1228 cm-1 show that a hydrogen bond is formed between TyrD and an amide carbonyl, probably that of the D2-Gln189 side chain. Electron nuclear double resonance (ENDOR) measurements have shown that TyrD. is hydrogen-bonded in the wild type but not in the mutant [Tang, X.-S., Chrisholm, D. A., Dismukes, G. C., Brudwig, G. W., and Diner, B. A. (1993) Biochemistry 32, 13742-13748]. The v(CO) mode of TyrD. at 1497 cm-1 is downshifted by 6 cm-1 compared to WT PS II, indicating that hydrogen bonding induces a frequency upshift of the v(CO) IR mode of Tyr.. IR signals from the Gln side chain v(C=O) mode are proposed to contribute at 1659 and 1692 cm-1 in the TyrD and TyrD. states, respectively. These frequencies are consistent with the rupture of a hydrogen bond upon TyrD. formation in the mutant. The frequency of the v(CO) mode of TyrD., observed at 1503 cm-1 for WT PS II, is intermediate between that observed at 1497 cm-1 in the D2-His189Gln mutant and at 1513 cm-1 for Tyr. formed by UV irradiation in borate buffer, suggesting weaker or fewer hydrogen bonds for TyrD. in PS II than in solution. The role of D2-His189 in proton uptake upon TyrD. formation is also investigated.