Predation on Northern krill (Meganyctiphanes norvegica Sars)

Non-lethal effects of the predator Meganyctiphanes norvegica and influence of seasonal photoperiod and food availability on the diel feeding behaviour of the copepod Centropages typicus

Predators can induce changes in the diel activity patterns of marine copepods. Besides vertical migration, diel feeding rhythms have been suggested as an antipredator phenotypic response. We conducted experiments to assess the non-lethal direct effects of the predator Meganyctiphanes norvegica (northern krill) on the diel feeding patterns of the calanoid copepod Centropages typicus. We also analysed the influence of seasonal photoperiod and prey availability on the intensity of copepod feeding rhythms. We did not detect any large effect of krill presence on the diel feeding behaviour of copepods, either in day-night differences or total daily ingestions. Seasonal photoperiod and prey availability, however, significantly affected the magnitude of copepod feeding cycles, with larger diel differences in shorter days and at lower prey concentrations. Therefore, the role of non-lethal direct effects of predators on the diel feeding activity of marine copepods remain debatable and might not be as relevant as in freshwater zooplankton.

Biotremology in arthropods

Effective communication is essential in animal life to allow fundamental behavioral processes and survival. Communicating by surface-borne vibrations is likely the most ancient mode of getting and exchanging information in both invertebrates and vertebrates. In this review, we concentrate on the use of vibrational communication in arthropods as a form of intraspecific and interspecific signaling, with a focus on the newest discoveries from our research group in terrestrial isopods (Crustacea: Isopoda: Oniscidea), a taxon never investigated before in this context. After getting little attention in the past, biotremology is now an emerging field of study in animal communication, and it is receiving increased interest from the scientific community dealing with these behavioral processes. In what follows, we illustrate the general principles and mechanisms on which biotremology is based, using definitions, examples, and insights from the literature in arthropods. Vibrational communication in arthropods has mainly been studied in insects and arachnids. For these taxa, much evidence of its use as a source of information from the surrounding environment exists, as well as its involvement in many behavioral roles, such as courtship and mating, conspecific recognition, competition, foraging, parental care, and danger perception. Recently, and for the first time, communication through surface-borne waves has been studied in terrestrial isopods, using a common Mediterranean species of the Armadillidae family as a pilot species, Armadillo officinalis Duméril, 1816. Mainly, for this species, we describe typical behavioral processes, such as turn alternation, aggregation, and stridulation, where vibrational communication appears to be involved.

A transcriptomic resource for the northern krill Meganyctiphanes norvegica based on a short-term temperature exposure experiment

The northern krill, Meganyctiphanes norvegica, is an important component of the pelagic food web across the North Atlantic. Widespread from the Mediterranean to the Subarctic Atlantic, populations appear to be strongly adapted to local temperatures, and seem to have very little plasticity. The goal of this study was to create and annotate a de novo transcriptome assembly to allow for comparative and physiological studies and to explore the gene expression response of M. norvegica from the Gulf of Maine to two different temperature conditions. Our Trinity assembly produced 405,497 transcripts with ~16% annotation success versus nr with a stringent cutoff (>1e^-10), and substantial cross-annotation versus FlyBase and other published pelagic crustacean transcriptomes. There were 122 transcripts that were differentially expressed based on our 2-day 9 versus 12°C temperature exposure, and their annotation suggested changes in energetic metabolism and molting. These results generate a useful molecular resource for further more directed studies as well as provide initial insight into the physiological processes that may shape the temperature response of the northern krill.

Circadian signaling in the Northern krill Meganyctiphanes norvegica: In silico prediction of the protein components of a putative clock system using a publicly accessible transcriptome

The Northern krill Meganyctiphanes norvegica is a significant component of the zooplankton community in many regions of the North Atlantic Ocean. In the areas it inhabits, M. norvegica is of great importance ecologically, as it is both a major consumer of phytoplankton/small zooplankton and is a primary food source for higher-level consumers. One behavior of significance for both feeding and predator avoidance in Meganyctiphanes is diel vertical migration (DVM), i.e., a rising from depth at dusk and a return to depth at dawn. In this and other euphausiids, an endogenous circadian pacemaker is thought, at least in part, to control DVM. Currently, there is no information concerning the identity of the genes/proteins that comprise the M. norvegica circadian system. In fact, there is little information concerning the molecular underpinnings of circadian rhythmicity in crustaceans generally. Here, a publicly accessible transcriptome was used to identify the molecular components of a putative Meganyctiphanes circadian system. A complete set of core clock proteins was deduced from the M. norvegica transcriptome (clock, cryptochrome 2, cycle, period and timeless), as was a large suite of proteins that likely function as modulators of the core clock (e.g., doubletime), or serves as inputs to it (cryptochrome 1) or outputs from it (pigment dispersing hormone). This is the first description of a "complete" (core clock through putative output pathway signals) euphausiid clock system, and as such, provides a foundation for initiating molecular investigations of circadian signaling in M. norvegica and other krill species, including how clock systems may regulate DVM and other behaviors.

Bioluminescence as an ecological factor during high Arctic polar night

Bioluminescence commonly influences pelagic trophic interactions at mesopelagic depths. Here we characterize a vertical gradient in structure of a generally low species diversity bioluminescent community at shallower epipelagic depths during the polar night period in a high Arctic fjord with in situ bathyphotometric sampling. Bioluminescence potential of the community increased with depth to a peak at 80 m. Community composition changed over this range, with an ecotone at 20–40 m where a dinoflagellate-dominated community transitioned to dominance by the copepod Metridia longa. Coincident at this depth was bioluminescence exceeding atmospheric light in the ambient pelagic photon budget, which we term the bioluminescence compensation depth. Collectively, we show a winter bioluminescent community in the high Arctic with vertical structure linked to attenuation of atmospheric light, which has the potential to influence pelagic ecology during the light-limited polar night.

Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture

We present a new transcriptome assembly of the Pacific whiteleg shrimp (Litopenaeus vannamei), the species most farmed for human consumption. Its functional annotation, a substantial improvement over previous ones, is provided freely. RNA-Seq with Illumina HiSeq technology was used to analyze samples extracted from shrimp abdominal muscle, hepatopancreas, gills and pleopods. We used the Trinity and Trinotate software suites for transcriptome assembly and annotation, respectively. The quality of this assembly and the affiliated targeted homology searches greatly enrich the curated transcripts currently available in public databases for this species. Comparison with the model arthropod Daphnia allows some insights into defining characteristics of decapod crustaceans. This large-scale gene discovery gives the broadest depth yet to the annotated transcriptome of this important species and should be of value to ongoing genomics and immunogenetic resistance studies in this shrimp of paramount global economic importance.