Supramolecular Self-assembly of Transition Metal Carbonyl Molecules Through M–CO(Lone Pair)…π(Arene) Interactions

Analysis of the Orbital and Electrostatic Contributions to the Lone Pair-Aromatic Interaction Using Molecular Rotors

The attractive interaction between carbonyl oxygens and the π-face of aromatic surfaces was studied using N-phenylimide molecular rotors. The C═O···Ar interactions could stabilize the transition states but were half the strength of comparable C═O···C═O interactions. The C═O···Ar interaction had a significant electrostatic component but only a small orbital delocalization component.

Intra- and intermolecular interactions in a series of chlorido-tricarbonyl-diazabutadienerhenium(I) complexes: structural and theoretical studies

A series of new chlorido-tricarbonylrhenium(I) complexes bearing alkyl-substituted diazabutadiene (DAB) ligands, namely N,N'-bis(2,4-dimethylbenzene)-1,4-diazabutadiene (L1), N,N'-bis(2,4-dimethylbenzene)-2,3-dimethyl-1,4-diazabutadiene (L2), N,N'-bis(2,4,6-trimethylbenzene)-2,3-dimethyl-1,4-diazabutadiene (L3) and N,N'-bis(2,6-diisopropylbenzene)-1,4-diazabutadiene (L4), were synthesized and investigated. The crystal structures have been fully characterized by X-ray diffraction and spectroscopic methods. Density functional theory, natural bond orbital and non-covalent interaction index methods have been used to study the optimized geometry in the gas phase and intra- and intermolecular interactions in the complexes, respectively. The most important studied interactions in these metal carbonyl complexes are n→π*, n→σ* and π→π*. Among complexes 1-4, only 2 shows interesting intermolecular n→π* interactions due to lp(C[triple-bond]O)...π* and lp(Cl)...π* (lp = lone pair) contacts.

Structural, Non-Covalent Interaction, and Natural Bond Orbital Studies on Bromido-Tricarbonyl Rhenium(I) Complexes Bearing Alkyl-Substituted 1,4-Diazabutadiene (DAB) Ligands

The synthesis, characterization, structural and computational studies of Re(I) tricarbonyl bromo complexes bearing alkyl-substituted 1,4-diazabutadiene ligands, [Re(CO)3(1,4-DAB)Br], where 1,4-DAB = N,N-bis(2,4-dimethylbenzene)-1,4-diazabutadiene, 2,4-Me2DAB (1); N,N-bis(2,4-dimethylbenzene)-2,3-dimethyl-1,4-diazabutadiene, 2,4-Me2DABMe (2); N,N-bis(2,4,6-trimethylbenzene)-1,4-diazabutadiene, 2,4,6-Me3DAB (3); and N,N-bis(2,6-diisopropylbenzene)-1,4-diazabutadiene, 2,6-ipr2DAB (4) are reported. The complexes were characterized by different spectroscopic methods such as FT-IR, 1H-NMR, 13C-NMR, and elemental analyses and their solid-state structures were confirmed by X-ray diffraction. In each complex, the Re(I) centre shows a distorted octahedral shape with a facial geometry of carbonyl groups. The gas phase geometry of the complexes was identified by density functional theory. Interesting intermolecular n…π* interactions of complexes 1 and 3 were investigated by non-covalent interaction index (NCI), and natural bond orbital (NBO) analyses. The intramolecular n…σ*, σ…π*, π…σ* interactions were also studied in complexes 3 and 4.

Supramolecular assembly through intermolecular n → π* interactions through a coordinated perrhenate formed via superoxidation of Re(i) to Re(vii) in the formation of substituted Re(CO)3 complexes bearing Diimine ligands

Two Re(i) tricarbonyl complexes bearing Ph₄TAP and dafone ligands and having a coordinated perrhenate group obtained via in situ superoxidation of Re(i) to Re(vii) have been characterized.

Non-covalent sulfoxide⋯(nitrosyl group) interactions involving coordinated nitrosyl in a Ru(ii) nitrosyl complex with an α-diimine ligand: structural and computational studies

Inspection of the X-ray structure of the newly prepared Ru–nitrosyl complex bearing an α-diimine ligand revealed for the first time the π-hole interaction involving the coordinated nitrosyl group with DMSO.

Metal carbonyl cluster-based coordination polymers: diverse syntheses, versatile network structures, and special properties

This highlight surveys recent progress in groups 6–10 metal carbonyl cluster-based coordination polymers, focusing on diverse synthetic strategies, versatile structures, structural transformations, and semiconducting as well as magnetic properties.

New rhenium-tricarbonyl complexes bearing halogen-substituted bidentate ligands: structural, computational and Hirshfeld surfaces studies

The intermolecular interactions in a series of new complexes Re(CO)₃(N,N)X (N,N is a halogen substituted bidentate N–N donor and X is Cl or Br) have been studied crystallographically and computationally. Metal-bound halogens are more effective than carbon-bound halogens in forming significant intermolecular interactions.

On the influence of small chemical changes upon the supramolecular association in substituted 2-(phenoxy)-1,4-naphthoquinones

X-ray crystallography reveals the common feature of the title compounds is a 1,4-naphthoquinone ring system with a substituted phenoxy residue adjacent to an oxo-group to give 1 (H), 2 (3-Br), 3 (3-CF3), 4 (4-CN) and 5 (4-NO2). To a first approximation the fused ring system along with the two oxo substituents is planar with the major difference between the molecules relating to the relative orientations of the pendant phenoxy residues: dihedral angles range from 56.56(4)° (3) to 87.52(10)° (2). The presence of intermolecular C–H···O interactions is the common feature of the supramolecular association in the crystals of 1–5. In each of 1 and 5, these extend in three-dimensions but, only to supramolecular dimers in 4, chains in 2 and layers in 3. Each crystal also features C=O···π interactions, pointing to the importance of these points of contact in this series di-oxocompounds. In 2, these, along with C–Br···π interactions lead to a three-dimensional architecture. For 3, the C=O···π and π···π interactions occur within the layers which stack without directional interactions between them. In 4, C–H···O and C=O···π interactions combine to give a supramolecular layer, which also stack without directional interactions in the inter-layer region. Further analysis of the molecular packing was conducted by a Hirshfeld surface analysis (HSA). This points to the significant role of H···H, C···H/H···C and O···H/H···O contacts in the packing of 1. Notably different roles for these contacts are found in the other crystals correlating with the participation of the respective substituents in the molecular packing. The HSA suggests the association between layers in 3 (weak F···F and H···F interactions) and 4 (weak H···N interactions) is contributed by the phenoxy-substituents.

Sulfur(lone-pair)…π interactions with FAD in flavoenzymes

The interactions of π-systems with lone-pairs of electrons are known and have been described in biological systems, involving lone-pairs derived from metals, metalloids, sulfur, oxygen and nitrogen. This study describes a bibliographic survey of the disulfide-bound sulfur(lone-pair) interactions with π-systems residing in the flavin adenine dinucleotide (FAD) cofactor of oxidoreductase enzymes (flavoenzymes). Thus, of the 172 oxidoreductase enzymes evaluated for gamma-S(lone-pair)…π(FAD) interactions, 96 proteins (56%) exhibited these interactions corresponding; 61% of 350 the constituent monomers featured at least one gamma-S(lone-pair)…π(FAD) interaction. Two main points of association between the S(lone-pair) and the isoalloxazine moiety of FAD were identified, namely at the centroid of the bond linking the uracil and pyrazine rings (60%), and the centroid of the uracil ring (37%). Reflecting the nature of the secondary structure in three prominent classes of oxidoreductase enzymes: glutathione disulfide reductases (GR; 21 proteins), trypanothione disulfide reductases (TR, 14) and sulfhydryl oxidases (SOX, 22), the approach of the gamma-S(lone-pair) to the FAD residue was to the si-face of the isoalloxazine ring system, i.e. to the opposite side as the carbonyl residue, for all GR and TR examples, and to the re-face for all SOX examples. Finally, the attractive nature of the gamma-S(lone-pair)…π(FAD) interactions was confirmed qualitatively by an examination of the non-covalent interaction plots.

[μ2-Bis(di-phenyl-phosphan-yl)hexa-ne]bis-[undeca-carbonyl-triangulo-triruthenium(3 Ru-Ru)] hexane monosolvate: crystal structure and Hirshfeld surface analysis

In the title cluster complex hexane solvate, [Ru6(C30H32P2)(CO)22]·C6H14, two Ru3(CO)11 fragments are linked by a Ph2P(CH2)6PPh2 bridge with the P atoms equatorially disposed with respect to the Ru3 triangle in each case; the hexane solvent mol-ecule is statistically disordered. The Ru⋯Ru distances span a relatively narrow range, i.e. 2.8378 (4) to 2.8644 (4) Å. The hexyl chain within the bridge has an all-trans conformation. In the mol-ecular packing, C-H⋯O inter-actions between cluster mol-ecules, and between cluster and hexane solvent mol-ecules lead to a three-dimensional architecture. In addition, there are a large number of C≡O⋯π(arene) inter-actions in the crystal. The importance of the carbonyl groups in establishing the packing is emphasized by the contribution of 53.4% to the Hirshfeld surface by O⋯H/H⋯O contacts.

Persistence of C–H⋯π(chelate ring) interactions in the crystal structures of Pd(S2COR)2. The utility of Pd(S2COR)2as precursors for palladium sulphide materials

The influence of C–H⋯π(PdS₂C) interactions in the molecular packing of Pd(S₂COR)₂increases as the steric bulk ofRincreases.

Supramolecular architectures sustained by arene-C–H…π(quasi-chelate ring) interactions in the crystal structures of copper(I) complexes

A review of the crystallographic literature is presented whereby structures featuring a quasi-six-membered chelate ring of the type {CuCl…HNCS} were evaluated for the presence of intermolecular C–H…π(quasi-chelate) interactions. These are shown to stabilise crystal structures leading to zero-, one-, two- and even three-dimensional architectures. Details of these interactions are described and a comparison to analogous interactions formed intramolecularly has been made. The C–H…π(quasi-chelate) interactions in these structures occur in one-third of structures where such contacts can potentially form.

On the role of DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions in the crystal structures of dimethyl sulphoxide (DMSO) solvates

DMSO-O(lone pair)⋯π(arene), DMSO-S(lone pair)⋯π(arene) and SO⋯π(arene) interactions are found in DMSO solvates.

Reshaping molecules through cocrystallization. Comparison of the structures of Hg{Co(CO)4}2 and Hg{Co(CO)4}2·C60·toluene

Cocrystallization of Hg{Co(CO)4}2 with C60 produces Hg{Co(CO)4}2·C60·toluene in which the geometry of the Hg{Co(CO)4}2 molecule is rearranged to fit between the remarkably well ordered fullerenes.

2,6-Dinitrobenzoic acid and its 2 : 1 salts formed with isomeric n-({[(pyridin-1-ium-n-ylmethyl)carbamoyl]formamido}methyl) pyridin-1-ium, n = 2, 3 and 4

The co-crystallisation of two equivalents of 2,6-dinitrobenzoic acid (1) with one equivalent of a member of the isomeric N,N′-bis(pyridin-n-ylmethyl)ethanediamides, n = 2, 3 and 4, resulted in the anticipated 2 : 1 salts, 2–4. The central core, i.e. CH2N(H)C(=O)C(=O)N(H)CH2, of the isomeric di-cations are superimposable and chemically equivalent pairs of carbonyl, amide and pyridinium groups have an anti conformation. By contrast, the relative orientations of the terminal pyridinium rings from the central core vary significantly across the series as do the relative disposition of the acidic-H atoms. This feature of the structure influences the nature of N—H…O hydrogen bonding and, therefore, the observed supramolecular aggregation patterns. Thus, in 2, the syn-disposition of the nitrogen-bound hydrogen atoms enables the benzoate residue to interact via the two oxygen atoms with both pyridinium- and amine-H atoms to yield a zero-dimensional aggregate. By contrast, in each of 3 and 4, having further distance between the acidic-H atoms, the benzoate residues still interact (either through one both or both oxygen atoms) with pyridinium- and amine-H atoms but those derived from symmetry related molecules to generate one-dimensional aggregates. The three-dimensional architectures of 1–3 are consolidated, in the main, by C—H…O interactions. The structure of 1 revealed the benzoic acid residue to be perpendicular in contrast to the co-planar conforämations of the nitro groups. In the crystal packing, O–H…O hydrogen bonding lead to a helical supramolecular chain.