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Kreitz B, Abeywardane K, Goldsmith CF. Linking Experimental and Ab Initio Thermochemistry of Adsorbates with a Generalized Thermochemical Hierarchy. J Chem Theory Comput 2023. [PMID: 37354113 DOI: 10.1021/acs.jctc.3c00112] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2023]
Abstract
Enthalpies of formation of adsorbates are crucial parameters in the microkinetic modeling of heterogeneously catalyzed reactions since they quantify the stability of intermediates on the catalyst surface. This quantity is often computed using density functional theory (DFT), as more accurate methods are computationally still too expensive, which means that the derived enthalpies have a large uncertainty. In this study, we propose a new error cancellation method to compute the enthalpies of formation of adsorbates from DFT more accurately through a generalized connectivity-based hierarchy. The enthalpy of formation is determined through a hypothetical reaction that preserves atomistic and bonding environments. The method is applied to a data set of 60 adsorbates on Pt(111) with up to 4 heavy (non-hydrogen) atoms. Enthalpies of formation of the fragments required for the bond balancing reactions are based on experimental heats of adsorption for Pt(111). The comparison of enthalpies of formation derived from different DFT functionals using the isodesmic reactions shows that the effect of the functional is significantly reduced due to the error cancellation. Thus, the proposed methodology creates an interconnected thermochemical network of adsorbates that combines experimental with ab initio thermochemistry in a single and more accurate thermophysical database.
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Affiliation(s)
- Bjarne Kreitz
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Kento Abeywardane
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - C Franklin Goldsmith
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
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Abstract
Combustion is a reactive oxidation process that releases energy bound in chemical compounds used as fuels─energy that is needed for power generation, transportation, heating, and industrial purposes. Because of greenhouse gas and local pollutant emissions associated with fossil fuels, combustion science and applications are challenged to abandon conventional pathways and to adapt toward the demand of future carbon neutrality. For the design of efficient, low-emission processes, understanding the details of the relevant chemical transformations is essential. Comprehensive knowledge gained from decades of fossil-fuel combustion research includes general principles for establishing and validating reaction mechanisms and process models, relying on both theory and experiments with a suite of analytic monitoring and sensing techniques. Such knowledge can be advantageously applied and extended to configure, analyze, and control new systems using different, nonfossil, potentially zero-carbon fuels. Understanding the impact of combustion and its links with chemistry needs some background. The introduction therefore combines information on exemplary cultural and technological achievements using combustion and on nature and effects of combustion emissions. Subsequently, the methodology of combustion chemistry research is described. A major part is devoted to fuels, followed by a discussion of selected combustion applications, illustrating the chemical information needed for the future.
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Kreitz B, Lott P, Bae J, Blöndal K, Angeli S, Ulissi ZW, Studt F, Goldsmith CF, Deutschmann O. Detailed Microkinetics for the Oxidation of Exhaust Gas Emissions through Automated Mechanism Generation. ACS Catal 2022. [DOI: 10.1021/acscatal.2c03378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Bjarne Kreitz
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
| | - Patrick Lott
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
| | - Jongyoon Bae
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Katrín Blöndal
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Sofia Angeli
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
| | - Zachary W. Ulissi
- Department of Chemical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Felix Studt
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
- Institute of Catalysis Research and Technology, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen, Germany
| | - C. Franklin Goldsmith
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Olaf Deutschmann
- Institute for Chemical Technology and Polymer Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
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Anderson SD, Kreitz B, Turek T, Wehinger GD. Assessment of Concentration and Temperature Distribution in a Berty Reactor for an Exothermic Reaction. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.2c01459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Scott D. Anderson
- Institute of Chemical and Electrochemical Process Engineering, Clausthal University of Technology, Clausthal-Zellerfeld, 38678, Germany
| | - Bjarne Kreitz
- Institute of Chemical and Electrochemical Process Engineering, Clausthal University of Technology, Clausthal-Zellerfeld, 38678, Germany
- School of Engineering, Brown University, Providence, Rhode Island 02912, United States
| | - Thomas Turek
- Institute of Chemical and Electrochemical Process Engineering, Clausthal University of Technology, Clausthal-Zellerfeld, 38678, Germany
| | - Gregor D. Wehinger
- Institute of Chemical and Electrochemical Process Engineering, Clausthal University of Technology, Clausthal-Zellerfeld, 38678, Germany
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Shannon RJ, Martínez-Núñez E, Shalashilin DV, Glowacki DR. ChemDyME: Kinetically Steered, Automated Mechanism Generation through Combined Molecular Dynamics and Master Equation Calculations. J Chem Theory Comput 2021; 17:4901-4912. [PMID: 34283599 DOI: 10.1021/acs.jctc.1c00335] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In many scientific fields, there is an interest in understanding the way in which chemical networks evolve. The chemical networks which researchers focus upon have become increasingly complex, and this has motivated the development of automated methods for exploring chemical reactivity or conformational change in a "black-box" manner, harnessing modern computing resources to automate mechanism discovery. In this work, we present a new approach to automated mechanism generation which couples molecular dynamics and statistical rate theory to automatically find kinetically important reactions and then solve the time evolution of the species in the evolving network. The key to this chemical network mapping through combined dynamics and ME simulation approach is the concept of "kinetic convergence", whereby the search for new reactions is constrained to those species which are kinetically favorable at the conditions of interest. We demonstrate the capability of the new approach for two systems, a well-studied combustion system and a multiple oxygen addition system relevant to atmospheric aerosol formation.
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Affiliation(s)
- Robin J Shannon
- School of Chemistry, University of Bristol, Bristol BS8 1TS, U.K
| | - Emilio Martínez-Núñez
- Department of Physical Chemistry, University of Santiago de Compostela, Santiago de Compostela 15705, Spain
| | | | - David R Glowacki
- ArtSci International Foundation, 5th floor Mariner House, Bristol BS1 4QD, U.K
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Xu J, Cao XM, Hu P. Perspective on computational reaction prediction using machine learning methods in heterogeneous catalysis. Phys Chem Chem Phys 2021; 23:11155-11179. [PMID: 33972971 DOI: 10.1039/d1cp01349a] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Heterogeneous catalysis plays a significant role in the modern chemical industry. Towards the rational design of novel catalysts, understanding reactions over surfaces is the most essential aspect. Typical industrial catalytic processes such as syngas conversion and methane utilisation can generate a large reaction network comprising thousands of intermediates and reaction pairs. This complexity not only arises from the permutation of transformations between species but also from the extra reaction channels offered by distinct surface sites. Despite the success in investigating surface reactions at the atomic scale, the huge computational expense of ab initio methods hinders the exploration of such complicated reaction networks. With the proliferation of catalysis studies, machine learning as an emerging tool can take advantage of the accumulated reaction data to emulate the output of ab initio methods towards swift reaction prediction. Here, we briefly summarise the conventional workflow of reaction prediction, including reaction network generation, ab initio thermodynamics and microkinetic modelling. An overview of the frequently used regression models in machine learning is presented. As a promising alternative to full ab initio calculations, machine learning interatomic potentials are highlighted. Furthermore, we survey applications assisted by these methods for accelerating reaction prediction, exploring reaction networks, and computational catalyst design. Finally, we envisage future directions in computationally investigating reactions and implementing machine learning algorithms in heterogeneous catalysis.
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Affiliation(s)
- Jiayan Xu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China. and School of Chemistry and Chemical Engineering, Queen's University Belfast, Belfast BT9 5AG, UK
| | - Xiao-Ming Cao
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China.
| | - P Hu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Frontiers Science Center for Materiobiology and Dynamic Chemistry, Centre for Computational Chemistry and Research Institute of Industrial Catalysis, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, P. R. China. and School of Chemistry and Chemical Engineering, Queen's University Belfast, Belfast BT9 5AG, UK
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