Using species abundance distribution models and diversity indices for biogeographical analyses

Macaronesia as a Fruitful Arena for Ecology, Evolution, and Conservation Biology

Research in Macaronesia has led to substantial advances in ecology, evolution and conservation biology. We review the scientific developments achieved in this region, and outline promising research avenues enhancing conservation. Some of these discoveries indicate that the Macaronesian flora and fauna are composed of rather young lineages, not Tertiary relicts, predominantly of European origin. Macaronesia also seems to be an important source region for back-colonisation of continental fringe regions on both sides of the Atlantic. This group of archipelagos (Azores, Madeira, Selvagens, Canary Islands, and Cabo Verde) has been crucial to learn about the particularities of macroecological patterns and interaction networks on islands, providing evidence for the development of the General Dynamic Model of oceanic island biogeography and subsequent updates. However, in addition to exceptionally high richness of endemic species, Macaronesia is also home to a growing number of threatened species, along with invasive alien plants and animals. Several innovative conservation and management actions are in place to protect its biodiversity from these and other drivers of global change. The Macaronesian Islands are a well-suited field of study for island ecology and evolution research, mostly due to its special geological layout with 40 islands grouped within five archipelagos differing in geological age, climate and isolation. A large amount of data is now available for several groups of organisms on and around many of these islands. However, continued efforts should be made toward compiling new information on their biodiversity, to pursue various fruitful research avenues and develop appropriate conservation management tools.

Emergent Rarity Properties in Carabid Communities From Chinese Steppes With Different Climatic Conditions

Species abundance distributions (SADs) are increasingly used to investigate how species community structure changes in response to environmental variations. SAD models depict the relative abundance of species recorded in a community and express fundamental aspects of the community structure, namely patterns of commonness and rarity. However, the influence of differences in environmental conditions on SAD characteristics is still poorly understood. In this study we used SAD models of carabid beetles (Coleoptera: Carabidae) in three grassland ecosystems (desert, typical, and meadow steppes) in China. These ecosystems are characterized by different aridity conditions, thus offering an opportunity to investigate how SADs are influenced by differences in environmental conditions (mainly aridity and vegetation cover, and hence productivity). We used various SAD models, including the meta-community zero sum multinomial (mZSM), the lognormal (PLN) and Fisher’s logseries (LS), and uni- and multimodal gambin models. Analyses were done at the level of steppe type (coarse scale) and for different sectors within the same steppe (fine scale). We found that the mZSM model provided, in general, the best fit at both analysis scales. Model parameters were influenced by the scale of analysis. Moreover, the LS was the best fit in desert steppe SAD. If abundances are rarefied to the smallest sample, results are similar to those without rarefaction, but differences in models estimates become more evident. Gambin unimodal provided the best fit with the lowest α-value observed in desert steppe and higher values in typical and meadow steppes, with results which were strongly affected by the scale of analysis and the use of rarefaction. Our results indicate that all investigated communities are adequately modeled by two similar distributions, the mZSM and the LS, at both scales of analyses. This indicates (1) that all communities are characterized by a relatively small number of species, most of which are rare, and (2) that the meta-communities at the large scale maintain the basic SAD shape of the local communities. The gambin multimodal models produced exaggerated α-values, which indicates that they overfit simple communities. Overall, Fisher’s α, mZSM θ, and gambin α-values were substantially lower in the desert steppe and higher in the typical and meadow steppes, which implies a decreasing influence of environmental harshness (aridity) from the desert steppe to the typical and meadow steppes.

Response of benthic invertebrate assemblages to seasonal and habitat condition in the Wewe River, Ashanti region (Ghana)

Aquatic macro-invertebrates play a vital role in the food chain of river ecosystem at several trophic guilds and consumer levels, and are used as biomonitoring tools for aquatic ecosystem health. However, hydrologic conditions of these ecosystems have been severely altered because of the increase in urban development and agricultural expansion. This study examined benthic invertebrate response to processes that structure their community in the Wewe River, segmented into intact, medium, and severe condition zones. We sampled in 100 stations in a period of 4 months in the wet (June–September, 2019) and 3 months in the dry (January–March, 2020) seasons. Geometric series, rarefaction, and Hill numbers models were used to quantify invertebrate assemblages, while ordination technique, canonical correspondence analysis, was used to evaluate the influence of predictive factors on their assemblages. A total of 2,075 individuals belonging to 20 family taxa were registered. There was no significant difference in benthic assemblages between the dry and wet seasons. Predictive factors accounted for 47.04 and 50.84% variances, respectively. Taxa distribution patterns differed significantly only in the severely disturbed zone during the wet season. Neptidae, Libellulidae, and Chironomidae were the most abundant taxa, indicating their broad range habitat preference and their ability to adapt to seasonal changes. Asellidae and Perlidae were the least detected, suggesting their sensitivity to elevated levels of some water quality parameters. The findings highlight the threats to the benthic community and overall functional state of the Wewe River, with the need to consider the proposed conservation interventions indicated in this study.

Spatiotemporal dynamics of terrestrial invertebrate assemblages in the riparian zone of the Wewe river, Ashanti region, Ghana

This study assessed invertebrate response to disturbances in the riparian zone of the Wewe river, using geometric series, rarefaction, Renyi diversity, and CCA models. We sampled 2,077 individuals (dry season) and 2,282 (wet season) belonging to 16 invertebrate orders. The severely disturbed habitat registered the highest individuals (n = 1,999), while the least was the moderately disturbed habitat (n = 740). Seasonal assemblages were not significantly different. Fire, farming, tree felling, and erosion explained 66.8% and 60.55% in the dry and wet seasons, respectively, of variations in invertebrate assemblages. This suggests threats to the invertebrate community and the riparian ecosystem health by anthropogenic interventions.

Plant diversity is closely related to the density of zokor mounds in three alpine rangelands on the Tibetan Plateau

Background

Plateau zokor (Myospalax baileyi) is a subterranean rodent endemic to the Tibetan Plateau. This species has been generally viewed as a pest in China due to the competition for food with livestock and also causing soil erosion. As a result, plateau zokor has been the target of widespread poisoning or trapping campaigns designed to control or eliminate it since 1970s. But there is little research on the effect of plateau zokor on plant diversity in alpine rangelands. Therefore, objectively evaluating the positive effects of the plateau zokors disturbance on their living environment and plant communities is of great significance to understand the function of plateau zokor in alpine ecosystem.

Methods

Here, we selected three rangelands (alpine meadow, alpine steppe and alpine shrub meadow) in which plateau zokors are typically distributed on the Tibetan Plateau, and five zokor mound density gradients were selected in each rangeland type to study the effects of the mounds on soil moisture and temperature related to plant species diversity.

Results

The results showed that, with the mound density increasing, the soil temperature decreased significantly in all three rangeland types, and the soil moisture significantly increased in all three rangeland types. In the alpine meadow, both the plant diversity and cumulative species richness increased significantly with increasing mound density. The increase in broad-leaved forbs is the main reason for the increase of plant diversity in the alpine meadow disturbed by zokor mounds. In the alpine steppe, the plant diversity decreased significantly with increasing mound density, while the cumulative species richness initially decreased and then increased. In the alpine shrub meadow, the plant diversity first increased and then decreased with increasing mound density as did the cumulative species richness. In conclusion, plateau zokor mounds dominated the distribution of soil moisture and temperature and significantly affected plant diversity in these three rangelands on Tibetan Plateau; the results further deepen our understanding toward a co-evolved process.

Biogeography of the Caribbean Cyrtognatha spiders

Island systems provide excellent arenas to test evolutionary hypotheses pertaining to gene flow and diversification of dispersal-limited organisms. Here we focus on an orbweaver spider genus Cyrtognatha (Tetragnathidae) from the Caribbean, with the aims to reconstruct its evolutionary history, examine its biogeographic history in the archipelago, and to estimate the timing and route of Caribbean colonization. Specifically, we test if Cyrtognatha biogeographic history is consistent with an ancient vicariant scenario (the GAARlandia landbridge hypothesis) or overwater dispersal. We reconstructed a species level phylogeny based on one mitochondrial (COI) and one nuclear (28S) marker. We then used this topology to constrain a time-calibrated mtDNA phylogeny, for subsequent biogeographical analyses in BioGeoBEARS of over 100 originally sampled Cyrtognatha individuals, using models with and without a founder event parameter. Our results suggest a radiation of Caribbean Cyrtognatha, containing 11 to 14 species that are exclusively single island endemics. Although biogeographic reconstructions cannot refute a vicariant origin of the Caribbean clade, possibly an artifact of sparse outgroup availability, they indicate timing of colonization that is much too recent for GAARlandia to have played a role. Instead, an overwater colonization to the Caribbean in mid-Miocene better explains the data. From Hispaniola, Cyrtognatha subsequently dispersed to, and diversified on, the other islands of the Greater, and Lesser Antilles. Within the constraints of our island system and data, a model that omits the founder event parameter from biogeographic analysis is less suitable than the equivalent model with a founder event.

Avian Community Structure as a Function of Season, Habitat Type, and Disturbance, in Mole National Park, Northern Region (Ghana)

The study assessed factors that influenced bird-habitat preference, diversity, and spatial distribution in Mole National Park. Birds were identified using point count sampling method, while ordination techniques were performed to determine the influence of environmental factors on bird-habitat preference. A total of 4951 individuals belonging to 131 species were identified across the four habitat types in the wet (n= 3033) and dry (n= 1648) seasons. Despite the high abundance and richness of birds in the woodland and shrubland habitats, grassland habitat was the most diverse, due to the high spatial evenness distribution of the birds. Bushfire, patchiness, and animal trampling were the key environmental determinants in bird assemblages and habitat preferences and accounted for 62.02% and 81.82% variations in the two seasons. Rarer birds like White-Backed Vulture (NT) and White-Headed Vulture (CR), Bateleur Eagle (NT), and Woolly-Necked Stork (VU), with high conservation concern, suggest intensification of conservation effort, while the dominance of Sahel Bush-sparrow was probably due to their broad range habitat preferences and ability to adapt to environmental conditions across these habitats. These species could be used as indicators of habitat quality, if future scenarios restrict their movement or distribution in narrow range habitats.

A comparative analysis of terrestrial arthropod assemblages from a relict forest unveils historical extinctions and colonization differences between two oceanic islands

During the last few centuries oceanic island biodiversity has been drastically modified by human-mediated activities. These changes have led to the increased homogenization of island biota and to a high number of extinctions lending support to the recognition of oceanic islands as major threatspots worldwide. Here, we investigate the impact of habitat changes on the spider and ground beetle assemblages of the native forests of Madeira (Madeira archipelago) and Terceira (Azores archipelago) and evaluate its effects on the relative contribution of rare endemics and introduced species to island biodiversity patterns. We found that the native laurel forest of Madeira supported higher species richness of spiders and ground beetles compared with Terceira, including a much larger proportion of indigenous species, particularly endemics. In Terceira, introduced species are well-represented in both terrestrial arthropod taxa and seem to thrive in native forests as shown by the analysis of species abundance distributions (SAD) and occupancy frequency distributions (OFD). Low abundance range-restricted species in Terceira are mostly introduced species dispersing from neighbouring man-made habitats while in Madeira a large number of true rare endemic species can still be found in the native laurel forest. Further, our comparative analysis shows striking differences in species richness and composition that are due to the geographical and geological particularities of the two islands, but also seem to reflect the differences in the severity of human-mediated impacts between them. The high proportion of introduced species, the virtual absence of rare native species and the finding that the SADs and OFDs of introduced species match the pattern of native species in Terceira suggest the role of man as an important driver of species diversity in oceanic islands and add evidence for an extensive and severe human-induced species loss in the native forests of Terceira.

Oceanic island biogeography through the lens of the general dynamic model: assessment and prospect

The general dynamic model of oceanic island biogeography (GDM) has added a new dimension to theoretical island biogeography in recognizing that geological processes are key drivers of the evolutionary processes of diversification and extinction within remote islands. It provides a dynamic and essentially non-equilibrium framework generating novel predictions for emergent diversity properties of oceanic islands and archipelagos. Its publication in 2008 coincided with, and spurred on, renewed attention to the dynamics of remote islands. We review progress, both in testing the GDM's predictions and in developing and enhancing ecological-evolutionary understanding of oceanic island systems through the lens of the GDM. In particular, we focus on four main themes: (i) macroecological tests using a space-for-time rationale; (ii) extensions of theory to islands following different patterns of ontogeny; (iii) the implications of GDM dynamics for lineage diversification and trait evolution; and (iv) the potential for downscaling GDM dynamics to local-scale ecological patterns and processes within islands. We also consider the implications of the GDM for understanding patterns of non-native species diversity. We demonstrate the vitality of the field of island biogeography by identifying a range of potentially productive lines for future research.