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Iizuka T, Barre A, Rougé P, Charpin D, Scala E, Baudin B, Aizawa T, Sénéchal H, Poncet P. Gibberellin-regulated proteins: Emergent allergens. FRONTIERS IN ALLERGY 2022; 3:877553. [PMID: 36157274 PMCID: PMC9500206 DOI: 10.3389/falgy.2022.877553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 08/11/2022] [Indexed: 11/13/2022] Open
Abstract
About 10 years ago, a protein family was shown for the first time to contain allergenic members, gibberellin-regulated protein (GRP). The first reported member was from peach, Pru p 7. One can hypothesize that it was not detected before because its physicochemical characteristics overlap with those of lipid transfer protein (LTP), a well-known allergen, or because the exposure to GRP increased due to an increase in the gibberellin phythormone level in plant food, either exogenous or endogenous. Like LTPs, GRPs are small cationic proteins with disulfide bridges, are resistant to heat and proteolytic cleavage, and are involved in the defense of the plant. Besides peach, GRP allergens have been described in Japanese apricot (Pru m 7), sweet cherry (Pru av 7), orange (Cit s 7), pomegranate (Pun g 7), bell pepper (Cap a 7), strawberry (Fra a GRP), and also in pollen with a restriction to Cupressaceae tree family (Cup s 7, Cry j 7, and Jun a 7). IgE cross-reactivities were described between GRPs, and the reported peach/cypress and citrus/cypress syndromes may therefore be explained because of these GRP cross-reactivities. GRPs are clinically relevant, and severe adverse reactions may sometimes occur in association with cofactors. More than 60% and up to 95% sequence identities are calculated between various allergenic GRPs, and three-dimensional models show a cleft in the molecule and predict at least three epitopic regions. The structure of the protein and its properties and the matrix effect in the original allergenic source should be unraveled to understand why, despite the ubiquity of the protein family in plants, only a few members are able to sensitize patients.
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Affiliation(s)
- T. Iizuka
- Protein Science Laboratory, Hokkaido University, Sapporo, Japan
| | - A. Barre
- UMR 152 Pharma-Dev, Toulouse 3 University, Toulouse, France
| | - P. Rougé
- UMR 152 Pharma-Dev, Toulouse 3 University, Toulouse, France
| | | | - E. Scala
- “Clinical and Laboratory Molecular Allergy” Unit, Istituto Dermopatico Dell’Immacolata—IRCCS, Rome, Italy
| | - B. Baudin
- Biochemistry Department, Armand Trousseau Children Hospital, APHP, Paris, France
| | - T. Aizawa
- Protein Science Laboratory, Hokkaido University, Sapporo, Japan
| | - H. Sénéchal
- “Allergy / Environment” Research Team, Armand Trousseau Children Hospital, APHP, Paris, France
| | - P. Poncet
- “Allergy / Environment” Research Team, Armand Trousseau Children Hospital, APHP, Paris, France
- Immunology Department, Institut Pasteur, Paris, France
- Correspondence: P. Poncet
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2
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Viotti C, Albrecht K, Amaducci S, Bardos P, Bertheau C, Blaudez D, Bothe L, Cazaux D, Ferrarini A, Govilas J, Gusovius HJ, Jeannin T, Lühr C, Müssig J, Pilla M, Placet V, Puschenreiter M, Tognacchini A, Yung L, Chalot M. Nettle, a Long-Known Fiber Plant with New Perspectives. MATERIALS 2022; 15:ma15124288. [PMID: 35744347 PMCID: PMC9230748 DOI: 10.3390/ma15124288] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 06/10/2022] [Accepted: 06/13/2022] [Indexed: 11/30/2022]
Abstract
The stinging nettle Urticadioica L. is a perennial crop with low fertilizer and pesticide requirements, well adapted to a wide range of environmental conditions. It has been successfully grown in most European climatic zones while also promoting local flora and fauna diversity. The cultivation of nettle could help meet the strong increase in demand for raw materials based on plant fibers as a substitute for artificial fibers in sectors as diverse as the textile and automotive industries. In the present review, we present a historical perspective of selection, harvest, and fiber processing features where the state of the art of nettle varietal selection is detailed. A synthesis of the general knowledge about its biology, adaptability, and genetics constituents, highlighting gaps in our current knowledge on interactions with other organisms, is provided. We further addressed cultivation and processing features, putting a special emphasis on harvesting systems and fiber extraction processes to improve fiber yield and quality. Various uses in industrial processes and notably for the restoration of marginal lands and avenues of future research on this high-value multi-use plant for the global fiber market are described.
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Affiliation(s)
- Chloé Viotti
- UMR Chrono-Environnement, CNRS 6249, Université Bourgogne Franche-Comté, 25000 Besançon, France; (C.V.); (C.B.)
| | - Katharina Albrecht
- The Biological Materials Group, Department of Biomimetics, HSB—City University of Applied Sciences Bremen, Neustadtswall 30, 28199 Bremen, Germany; (K.A.); (L.B.); (J.M.)
| | - Stefano Amaducci
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy; (S.A.); (A.F.); (M.P.)
| | - Paul Bardos
- r3 Environmental Technology Ltd., Earley Gate, Reading RG6 6AT, UK;
| | - Coralie Bertheau
- UMR Chrono-Environnement, CNRS 6249, Université Bourgogne Franche-Comté, 25000 Besançon, France; (C.V.); (C.B.)
| | - Damien Blaudez
- LIEC, CNRS, Université de Lorraine, 54000 Nancy, France; (D.B.); (L.Y.)
| | - Lea Bothe
- The Biological Materials Group, Department of Biomimetics, HSB—City University of Applied Sciences Bremen, Neustadtswall 30, 28199 Bremen, Germany; (K.A.); (L.B.); (J.M.)
| | | | - Andrea Ferrarini
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy; (S.A.); (A.F.); (M.P.)
| | - Jason Govilas
- Department of Applied Mechanics, FEMTO-ST Institute, Université Bourgogne Franche-Comté, 25000 Besançon, France; (J.G.); (T.J.); (V.P.)
| | - Hans-Jörg Gusovius
- Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB), Max-Eyth-Allee 100, 14469 Potsdam, Germany; (H.-J.G.); (C.L.)
| | - Thomas Jeannin
- Department of Applied Mechanics, FEMTO-ST Institute, Université Bourgogne Franche-Comté, 25000 Besançon, France; (J.G.); (T.J.); (V.P.)
| | - Carsten Lühr
- Leibniz Institute for Agricultural Engineering and Bioeconomy (ATB), Max-Eyth-Allee 100, 14469 Potsdam, Germany; (H.-J.G.); (C.L.)
| | - Jörg Müssig
- The Biological Materials Group, Department of Biomimetics, HSB—City University of Applied Sciences Bremen, Neustadtswall 30, 28199 Bremen, Germany; (K.A.); (L.B.); (J.M.)
| | - Marcello Pilla
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84, 29122 Piacenza, Italy; (S.A.); (A.F.); (M.P.)
| | - Vincent Placet
- Department of Applied Mechanics, FEMTO-ST Institute, Université Bourgogne Franche-Comté, 25000 Besançon, France; (J.G.); (T.J.); (V.P.)
| | - Markus Puschenreiter
- Institute of Soil Research, University of Natural Resources and Life Sciences Vienna, 1180 Vienna, Austria; (M.P.); (A.T.)
| | - Alice Tognacchini
- Institute of Soil Research, University of Natural Resources and Life Sciences Vienna, 1180 Vienna, Austria; (M.P.); (A.T.)
| | - Loïc Yung
- LIEC, CNRS, Université de Lorraine, 54000 Nancy, France; (D.B.); (L.Y.)
| | - Michel Chalot
- UMR Chrono-Environnement, CNRS 6249, Université Bourgogne Franche-Comté, 25000 Besançon, France; (C.V.); (C.B.)
- Faculté des Sciences et Technologies, Université de Lorraine, 54000 Nancy, France
- Correspondence:
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Abstract
INTRODUCTION Allergies affect 20-30% of the population and respiratory allergies are mostly due to pollen grains from anemophilous plants. One to 5% of people suffer from food allergies and clinicians report increasing numbers of pollen-food allergy syndrome (PFAS), such that the symptoms have broadened from respiratory to gastrointestinal, and even to anaphylactic shock in the presence of cofactors. Thirty to 60% of food allergies are associated with pollen allergy while the percentage of pollen allergies associated to food allergy varies according to local environment and dietary habits. AREAS COVERED Articles published in peer-reviewed journals, covered by PubMed databank, clinical data are discussed including symptoms, diagnosis, and management. A chapter emphasizes the role of six well-known allergen families involved in PFAS: PR10 proteins, profilins, lipid transfer proteins, thaumatin-like proteins, isoflavone reductases, and β-1,3 glucanases. The relevance in PFAS of three supplementary allergen families is presented: oleosins, polygalacturonases, and gibberellin-regulated proteins. To support the discussion a few original relevant results were added. EXPERT OPINION Both allergenic sources, pollen and food, are submitted to the same stressful environmental changes resulting in an increase of pathogenesis-related proteins in which numerous allergens are found. This might be responsible for the potential increase of PFAS.
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Affiliation(s)
- Pascal Poncet
- Armand Trousseau Children Hospital, Immunology Department, Allergy & Environment Research Team , Paris, France.,Immunology Department, Institut Pasteur , Paris, France
| | - Hélène Sénéchal
- Armand Trousseau Children Hospital, Immunology Department, Allergy & Environment Research Team , Paris, France
| | - Denis Charpin
- Aix Marseille University and French Clean Air Association (APPA) , Marseille, France
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Polling M, Li C, Cao L, Verbeek F, de Weger LA, Belmonte J, De Linares C, Willemse J, de Boer H, Gravendeel B. Neural networks for increased accuracy of allergenic pollen monitoring. Sci Rep 2021; 11:11357. [PMID: 34059743 PMCID: PMC8166864 DOI: 10.1038/s41598-021-90433-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 05/04/2021] [Indexed: 11/25/2022] Open
Abstract
Monitoring of airborne pollen concentrations provides an important source of information for the globally increasing number of hay fever patients. Airborne pollen is traditionally counted under the microscope, but with the latest developments in image recognition methods, automating this process has become feasible. A challenge that persists, however, is that many pollen grains cannot be distinguished beyond the genus or family level using a microscope. Here, we assess the use of Convolutional Neural Networks (CNNs) to increase taxonomic accuracy for airborne pollen. As a case study we use the nettle family (Urticaceae), which contains two main genera (Urtica and Parietaria) common in European landscapes which pollen cannot be separated by trained specialists. While pollen from Urtica species has very low allergenic relevance, pollen from several species of Parietaria is severely allergenic. We collect pollen from both fresh as well as from herbarium specimens and use these without the often used acetolysis step to train the CNN model. The models show that unacetolyzed Urticaceae pollen grains can be distinguished with > 98% accuracy. We then apply our model on before unseen Urticaceae pollen collected from aerobiological samples and show that the genera can be confidently distinguished, despite the more challenging input images that are often overlain by debris. Our method can also be applied to other pollen families in the future and will thus help to make allergenic pollen monitoring more specific.
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Affiliation(s)
| | - Chen Li
- Leiden Institute of Advanced Computer Science (LIACS), Leiden, The Netherlands
| | - Lu Cao
- Leiden Institute of Advanced Computer Science (LIACS), Leiden, The Netherlands
| | - Fons Verbeek
- Leiden Institute of Advanced Computer Science (LIACS), Leiden, The Netherlands
| | - Letty A de Weger
- Department of Pulmonology, Leiden University Medical Center, Leiden, The Netherlands
| | - Jordina Belmonte
- Institute of Environmental Sciences and Technology (ICTA-UAB), The Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain
| | - Concepción De Linares
- Institute of Environmental Sciences and Technology (ICTA-UAB), The Universitat Autònoma de Barcelona, Bellaterra, Cerdanyola del Vallès, Spain
| | - Joost Willemse
- Microbial Sciences, Institute of Biology, Leiden, The Netherlands
| | - Hugo de Boer
- Natural History Museum, University of Oslo, Oslo, Norway
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5
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Tang HHF, Sly PD, Holt PG, Holt KE, Inouye M. Systems biology and big data in asthma and allergy: recent discoveries and emerging challenges. Eur Respir J 2020; 55:13993003.00844-2019. [PMID: 31619470 DOI: 10.1183/13993003.00844-2019] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 09/12/2019] [Indexed: 12/15/2022]
Abstract
Asthma is a common condition caused by immune and respiratory dysfunction, and it is often linked to allergy. A systems perspective may prove helpful in unravelling the complexity of asthma and allergy. Our aim is to give an overview of systems biology approaches used in allergy and asthma research. Specifically, we describe recent "omic"-level findings, and examine how these findings have been systematically integrated to generate further insight.Current research suggests that allergy is driven by genetic and epigenetic factors, in concert with environmental factors such as microbiome and diet, leading to early-life disturbance in immunological development and disruption of balance within key immuno-inflammatory pathways. Variation in inherited susceptibility and exposures causes heterogeneity in manifestations of asthma and other allergic diseases. Machine learning approaches are being used to explore this heterogeneity, and to probe the pathophysiological patterns or "endotypes" that correlate with subphenotypes of asthma and allergy. Mathematical models are being built based on genomic, transcriptomic and proteomic data to predict or discriminate disease phenotypes, and to describe the biomolecular networks behind asthma.The use of systems biology in allergy and asthma research is rapidly growing, and has so far yielded fruitful results. However, the scale and multidisciplinary nature of this research means that it is accompanied by new challenges. Ultimately, it is hoped that systems medicine, with its integration of omics data into clinical practice, can pave the way to more precise, personalised and effective management of asthma.
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Affiliation(s)
- Howard H F Tang
- Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Australia .,Cambridge Baker Systems Genomics Initiative, Dept of Public Health and Primary Care, University of Cambridge, Cambridge, UK.,School of BioSciences, The University of Melbourne, Parkville, Australia
| | - Peter D Sly
- Queensland Children's Medical Research Institute, The University of Queensland, Brisbane, Australia.,Telethon Kids Institute, University of Western Australia, Perth, Australia
| | - Patrick G Holt
- Queensland Children's Medical Research Institute, The University of Queensland, Brisbane, Australia.,Telethon Kids Institute, University of Western Australia, Perth, Australia
| | - Kathryn E Holt
- Dept of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Australia.,London School of Hygiene and Tropical Medicine, London, UK
| | - Michael Inouye
- Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Australia.,Cambridge Baker Systems Genomics Initiative, Dept of Public Health and Primary Care, University of Cambridge, Cambridge, UK.,School of BioSciences, The University of Melbourne, Parkville, Australia.,The Alan Turing Institute, London, UK
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6
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De Linares C, Alcázar P, Valle AM, Díaz de la Guardia C, Galán C. Parietaria major allergens vs pollen in the air we breathe. ENVIRONMENTAL RESEARCH 2019; 176:108514. [PMID: 31202045 DOI: 10.1016/j.envres.2019.05.045] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Revised: 05/20/2019] [Accepted: 05/29/2019] [Indexed: 06/09/2023]
Abstract
BACKGROUND Parietaria and Urtica are the genera from the Urticaceae family more frequent in Mediterranean and Atlantic areas. Moreover, both genera share pollination periods, and their pollen (of the main species) is so similar that there is no aerobiological evidence of the proportion of each of them in the airborne pollen identification, except in the case of U. membranacea. However, Parietaria is one of the most important causes of pollinosis and Urtica is not. Our aim is determine if airborne Urticaceae pollen concentrations show the aerodynamics of the two major allergens of Parietaria (Par j 1 and Par j 2) as well as the allergen distribution in the different-sized particles. METHODS The air was sampled during the pollination period of Urticaceae using Hirst Volumetric Sampler and Andersen Cascade Impactor in two cities of Southern Spain (Córdoba and Granada). The samples were analysed by the methodology proposed by the Spanish Aerobiology Network (REA) and the minimum requirements of the European Aeroallergen Society (EAS) for pollen, and by ELISA immunoassay for allergens. RESULTS The patterns of airborne pollen and Par j 1-Par j 2 were present in the air during the studied period, although with irregular oscillations. Urticaceae pollen and Par j 1-Par j 2 allergens located in PM2.5 showed positive and significant correlation during the period with maximum concentrations (March to April). CONCLUSION Parietaria aeroallergens show similar pattern of Urticaceae airborne pollen. Urticaceae pollen calendar is as a good tool for allergy prevention. On the other hand, important concentrations of Par j 1 and Par j 2 were located in the breathable fraction (PM2.5), which could explain the asthmatic symptoms in the allergic population to Parietaria.
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Affiliation(s)
- Concepción De Linares
- Unitat de Botànica and Institut de Ciència i Tecnologia Ambientals (ICTA), Universitat Autònoma de Barcelona, Bellaterra, Spain.
| | - Purificación Alcázar
- Department of Botany, Ecology and Plant Physiology, University of Córdoba, Spain
| | - Ana M Valle
- Pharmacy Service, Campus de la Salud Hospital, Granada, Spain
| | | | - Carmen Galán
- Department of Botany, Ecology and Plant Physiology, University of Córdoba, Spain
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7
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Ciprandi G, Puccinelli P, Incorvaia C, Masieri S. Parietaria Allergy: An Intriguing Challenge for the Allergist. MEDICINA (KAUNAS, LITHUANIA) 2018; 54:E106. [PMID: 30544607 PMCID: PMC6306946 DOI: 10.3390/medicina54060106] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 10/18/2018] [Revised: 12/05/2018] [Accepted: 12/05/2018] [Indexed: 12/21/2022]
Abstract
Parietaria pollen is the most important cause of pollen allergies in the Mediterranean area, as Parietaria is widespread in this region. Many issues are associated with Parietaria allergy, including the duration of the pollen season (many doctors in fact believe that it lasts throughout the year), pollen load (which seems to be increasing over time), the impact of age (on IgE production and symptom severity), inflammatory changes (after pollen exposure), and the choice of allergen immunotherapy (AIT). In addition, molecular diagnostics allows for the defining of a correct diagnosis, differentiating between mere sensitization and true allergy. This review considers these topics and will hopefully help the allergist in clinical practice. Parietaria allergy is an intriguing challenge for the allergist in clinical practice, but it may be adequately managed by knowing the peculiarities of respective territories and the clinical characteristics of each patient.
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Affiliation(s)
| | - Paola Puccinelli
- Scientific, Pharmacovigilance and Regulatory Department Stallergenes-Greer, 20100 Milan, Italy.
| | | | - Simonetta Masieri
- Department of Otorhinolaryngology, Sapienza University, 00100 Rome, Italy.
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8
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Double One-Dimensional Electrophoresis (D1-DE) Adapted for Immunoproteomics. Methods Mol Biol 2018. [PMID: 30276737 DOI: 10.1007/978-1-4939-8814-3_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
Abstract
The classical proteomics approach for the identification of allergen candidates consists on the separation of proteins by high-resolution two-dimensional electrophoresis (2-DE) with subsequent IgE immunoblotting and further analysis of IgE-reactive protein spots with mass spectrometry. In this approach at least two gels most be run. One gel is used for staining and the other is for immunoblotting by antibodies labeled with specific immunostains. Additional functional characterizations require either protein purification or 2-DE replicates and appear to be time- and reagent-consuming. Here we described a modified double one-dimensional electrophoresis (D1-DE) allowing the conversion of a protein spot previously visualized by 2-DE into an extended protein band. In D1-DE, the purity of the protein of interest is similar to 2-DE spots, but its abundance is many times higher than what can be found in a 2-DE single spot allowing many other functional analyses from a single D1-DE separation.
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10
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A new allergen family involved in pollen food-associated syndrome: Snakin/gibberellin-regulated proteins. J Allergy Clin Immunol 2018; 141:411-414.e4. [DOI: 10.1016/j.jaci.2017.06.041] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2017] [Revised: 06/12/2017] [Accepted: 06/28/2017] [Indexed: 11/24/2022]
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11
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Grosse-Veldmann B, Weigend M. The geometry of gender: hyper-diversification of sexual systems inUrticaL. (Urticaceae). Cladistics 2017; 34:131-150. [DOI: 10.1111/cla.12193] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/17/2017] [Indexed: 11/28/2022] Open
Affiliation(s)
- Bernadette Grosse-Veldmann
- Nees-Institut für Biodiversität der Pflanzen; Rheinische Friedrich-Wilhelms-Universität; Meckenheimer Allee 170 D-53115 Bonn Germany
| | - Maximilian Weigend
- Nees-Institut für Biodiversität der Pflanzen; Rheinische Friedrich-Wilhelms-Universität; Meckenheimer Allee 170 D-53115 Bonn Germany
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