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Scott KJ, Speers LJ, Bilkey DK. Utilizing synthetic training data for the supervised classification of rat ultrasonic vocalizations. THE JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA 2024; 155:306-314. [PMID: 38236810 DOI: 10.1121/10.0024340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/14/2023] [Indexed: 01/23/2024]
Abstract
Murine rodents generate ultrasonic vocalizations (USVs) with frequencies that extend to around 120 kHz. These calls are important in social behaviour, and so their analysis can provide insights into the function of vocal communication, and its dysfunction. The manual identification of USVs, and subsequent classification into different subcategories is time consuming. Although machine learning approaches for identification and classification can lead to enormous efficiency gains, the time and effort required to generate training data can be high, and the accuracy of current approaches can be problematic. Here, we compare the detection and classification performance of a trained human against two convolutional neural networks (CNNs), DeepSqueak (DS) and VocalMat (VM), on audio containing rat USVs. Furthermore, we test the effect of inserting synthetic USVs into the training data of the VM CNN as a means of reducing the workload associated with generating a training set. Our results indicate that VM outperformed the DS CNN on measures of call identification, and classification. Additionally, we found that the augmentation of training data with synthetic images resulted in a further improvement in accuracy, such that it was sufficiently close to human performance to allow for the use of this software in laboratory conditions.
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Affiliation(s)
- K Jack Scott
- Department of Psychology, University of Otago, William James Building, 275 Leith Walk, Dunedin 9016, New Zealand
| | - Lucinda J Speers
- Department of Psychology, University of Otago, William James Building, 275 Leith Walk, Dunedin 9016, New Zealand
- Grenoble Institut des Neurosciences, Inserm, France
| | - David K Bilkey
- Department of Psychology, University of Otago, William James Building, 275 Leith Walk, Dunedin 9016, New Zealand
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Liu Q, Ilčíková T, Radchenko M, Junková M, Špinka M. Effects of reduced kinematic and social play experience on affective appraisal of human-rat play in rats. Front Zool 2023; 20:34. [PMID: 37821980 PMCID: PMC10568924 DOI: 10.1186/s12983-023-00512-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 09/30/2023] [Indexed: 10/13/2023] Open
Abstract
BACKGROUND Play is a common and developmentally important behaviour in young mammals. Specifically in Norway rats (Rattus norvegicus), reduced opportunity to engage in rough-and-tumble (RT) play has been associated with impaired development in social competence. However, RT play is a complex behaviour having both a kinematic aspect (i.e., performing complex 3D manoeuvres during play fights) and a social aspect (interacting with a playful partner). There has been little research so far on disentangling the two aspects in RT play, especially on how these two aspects affect the affective appraisal of the intense physical contact during play. RESULTS To examine the developmental effects of kinematic and social play reduction on affective appraisal in rats, we subjected male Long-Evans rats from 21 days old to RT play experience that was reduced either kinematically (through playing in a low ceiling environment) or socially (through playing with a less playful Fischer-344 rat). Starting at 35 days, we measured their production of positively (50-kHz) and negatively (22-kHz) valenced ultrasonic vocalisations (USVs) in a 2-min standardised human-rat play procedure that mimicked the playful sequences of nape contact, pinning, and belly stimulation ('tickling') for ten days. We hypothesised that the rats with kinematically or socially reduced play would perceive the 'tickling' less positively and thus emit positive ultrasonic vocalisations at lower rates compared to control rats with non-reduced play experience. Our results confirmed that each of the treatments reduced play differently: while the kinematic reduction abolished playful pinnings entirely, the social reduction decreased the pinnings and made play highly asymmetric. During the tickling procedure, rats mostly produced 50 kHz USV, indicating that they appraised the procedure as positive. There was a wide inter individual variance and high individual consistency in rats' USV responses to 'tickling'. Crucially, neither the kinematically nor the socially reduced play experience affected either type of USV production when rats were 'tickled'. CONCLUSIONS This finding indicates that the ability to appraise play-like interactions as positive remains unaffected even when the kinematic or the social aspect of play experience was substantially curtailed.
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Affiliation(s)
- Quanxiao Liu
- Department of Ethology and Companion Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Prague, Czechia.
| | - Tereza Ilčíková
- Department of Ethology and Companion Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Prague, Czechia
| | - Mariia Radchenko
- Department of Ethology and Companion Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Prague, Czechia
| | - Markéta Junková
- Department of Ethology and Companion Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Prague, Czechia
| | - Marek Špinka
- Department of Ethology and Companion Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Prague, Czechia
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Lupfer G, Brandenburger A, Machado M. Ultrasonic vocalizations near 30 kHz may indicate excitement rather than distress in female Wistar rats. Appl Anim Behav Sci 2023. [DOI: 10.1016/j.applanim.2023.105881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
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Short communication: Do the tameness of the dams and the sex of the offspring have an influence on the “gentling” effect in laboratory rats? J Vet Behav 2022. [DOI: 10.1016/j.jveb.2022.05.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Song MK, Lee JH, Kim YJ. Effect of chronic handling and social isolation on emotion and cognition in adolescent rats. Physiol Behav 2021; 237:113440. [PMID: 33940083 DOI: 10.1016/j.physbeh.2021.113440] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Revised: 04/26/2021] [Accepted: 04/27/2021] [Indexed: 10/21/2022]
Abstract
Adolescence is a critical period of establishing social relations through social interactions that affect the emotional development associated with stress responses, anxiety, depression, and cognitive development. We investigated the behavioral and neurobiological changes induced by handling and social isolation in adolescent rats to determine social interaction effects. Rats were randomly divided into groups and used as a control, a handling, and a social isolation group. After 12 weeks, the handling group showed a significant increase in mobility in the open field test and in tryptophan hydroxylase expression in the dorsal raphe nucleus, as well as significantly reduced immobility times in the forced swim test, compared to the control group (p < 0.05). The social isolation group, in contrast, showed a significant increase in immobility times in the forced swim test and in glucocorticoid and SIRT1 expression in the hippocampus, as well as a significant reduction in mobility in the open field test and in escape latency times in the passive avoidance test, compared to the control group (p < 0.05). The present results show that while handling did not improve cognitive function, it reduced anxiety and lowered depression levels; social isolation, in contrast, significantly impaired the animals' stress response, anxiety and depression levels, and cognitive function. Our findings indicate that handling and social isolation have a strong effect on adolescents' emotional and cognitive development into healthy adults.
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Affiliation(s)
- Min Kyung Song
- Department of Nursing, Graduate school, Kyung Hee University, Seoul, 02447, Republic of Korea
| | - Joo Hee Lee
- Department of Nursing, Graduate school, Kyung Hee University, Seoul, 02447, Republic of Korea
| | - Youn-Jung Kim
- College of Nursing Science, Kyung Hee University• East West Nursing Institute, Seoul, 02447, Republic of Korea.
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Leveraging Social Learning to Enhance Captive Animal Care and Welfare. JOURNAL OF ZOOLOGICAL AND BOTANICAL GARDENS 2021. [DOI: 10.3390/jzbg2010003] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
From ants to zebras, animals are influenced by the behavior of others. At the simplest level, social support can reduce neophobia, increasing animals’ exploration of novel spaces, foods, and other environmental stimuli. Animals can also learn new skills more quickly and more readily after observing others perform them. How then can we apply animals’ proclivity to socially learn to enhance their care and welfare in captive settings? Here, I review the ways in which animals (selectively) use social information, and propose tactics for leveraging that to refine the behavioral management of captive animals: to enhance socialization techniques, enrichment strategies, and training outcomes. It is also important to consider, however, that social learning does not always promote the uniform expression of new behaviors. There are differences in animals’ likelihood to seek out or use socially provided information, driven by characteristics such as species, rank, age, and personality. Additionally, social learning can result in inexact transmission or the transmission of undesirable behaviors. Thus, understanding when, how, and why animals use social information is key to developing effective strategies to improve how we care for animals across settings and, ultimately, enhance captive animal welfare.
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Costa R, Tamascia ML, Sanches A, Moreira RP, Cunha TS, Nogueira MD, Casarini DE, Marcondes FK. Tactile stimulation of adult rats modulates hormonal responses, depression-like behaviors, and memory impairment induced by chronic mild stress: Role of angiotensin II. Behav Brain Res 2020; 379:112250. [DOI: 10.1016/j.bbr.2019.112250] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Revised: 09/17/2019] [Accepted: 09/17/2019] [Indexed: 12/19/2022]
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LaFollette MR, O’Haire ME, Cloutier S, Gaskill BN. A happier rat pack: The impacts of tickling pet store rats on human-animal interactions and rat welfare. Appl Anim Behav Sci 2018. [DOI: 10.1016/j.applanim.2018.02.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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The Effect of Gentle Handling on Depressive-Like Behavior in Adult Male Mice: Considerations for Human and Rodent Interactions in the Laboratory. Behav Neurol 2018; 2018:2976014. [PMID: 29692869 PMCID: PMC5859797 DOI: 10.1155/2018/2976014] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2017] [Revised: 12/08/2017] [Accepted: 12/19/2017] [Indexed: 02/04/2023] Open
Abstract
Environmental factors play a significant role in well-being of laboratory animals. Regulations and guidelines recommend, if not require, that stressors such as bright lighting, smells, and noises are eliminated or reduced to maximize animal well-being. A factor that is often overlooked is handling and how researchers interact with their animals. Researchers, lab assistants, and husbandry staff in animal facilities may use inconsistent handling methods when interacting with rodents, but humans should be considered a part of the animal's social environment. This study examined the effects of different handling techniques on depressive-like behavior, measured by the Porsolt forced swim test, in adult C57BL/6J male mice. The same two researchers handled the mice in a gentle, aggressive, or minimal (control) fashion over approximately two weeks prior to testing. The results demonstrated a beneficial effect of gentle handling: gentle handling reduced swimming immobility in the forced swim test compared to mice that were aggressively or minimally handled. We argue that gentle handling, rather than methodical handling, can foster a better relationship between the handlers and rodents. Although handling is not standardized across labs, consistent gentle handling allows for less challenging behavioral testing, better data collection, and overall improved animal welfare.
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Recording Field Potentials and Synaptic Plasticity From Freely Behaving Rodents. HANDBOOK OF BEHAVIORAL NEUROSCIENCE 2018. [DOI: 10.1016/b978-0-12-812028-6.00001-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Brando S, Buchanan-Smith HM. The 24/7 approach to promoting optimal welfare for captive wild animals. Behav Processes 2017; 156:83-95. [PMID: 29113925 DOI: 10.1016/j.beproc.2017.09.010] [Citation(s) in RCA: 85] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2016] [Revised: 09/01/2017] [Accepted: 09/15/2017] [Indexed: 01/06/2023]
Abstract
We have an ethical responsibility to provide captive animals with environments that allow them to experience good welfare. Husbandry activities are often scheduled for the convenience of care staff working within the constraints of the facility, rather than considering the biological and psychological requirements of the animals themselves. The animal welfare 24/7 across the lifespan concept provides a holistic framework to map features of the animal's life cycle, taking into account their natural history, in relation to variations in the captive environment, across day and night, weekdays, weekends, and seasons. In order for animals to have the opportunity to thrive, we argue the need to consider their lifetime experience, integrated into the environments we provide, and with their perspective in mind. Here, we propose a welfare assessment tool based upon 14 criteria, to allow care staff to determine if their animals' welfare needs are met. We conclude that animal habitat management will be enhanced with the use of integrated technologies that provide the animals with more opportunities to engineer their own environments, providing them with complexity, choice and control.
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Affiliation(s)
- Sabrina Brando
- World Association of Zoos and Aquariums, Rue Mauverney 28, CH-1196 Gland, Switzerland.
| | - Hannah M Buchanan-Smith
- Psychology, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, Scotland, United Kingdom.
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Rocha ADDL, Menescal-de-Oliveira L, da Silva LFS. Effects of human contact and intra-specific social learning on tonic immobility in guinea pigs, Cavia porcellus. Appl Anim Behav Sci 2017. [DOI: 10.1016/j.applanim.2017.02.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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LaFollette MR, O’Haire ME, Cloutier S, Blankenberger WB, Gaskill BN. Rat tickling: A systematic review of applications, outcomes, and moderators. PLoS One 2017; 12:e0175320. [PMID: 28384364 PMCID: PMC5383284 DOI: 10.1371/journal.pone.0175320] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 03/23/2017] [Indexed: 01/28/2023] Open
Abstract
Introduction Rats initially fear humans which can increase stress and impact study results. Additionally, studying positive affective states in rats has proved challenging. Rat tickling is a promising habituation technique that can also be used to model and measure positive affect. However, current studies use a variety of methods to achieve differential results. Our objective was to systematically identify, summarize, and evaluate the research on tickling in rats to provide direction for future investigation. Our specific aims were to summarize current methods used in tickling experiments, outcomes from tickling, and moderating factors. Methods We systematically evaluated all articles about tickling identified from PubMed, Scopus, Web of Science, and PsychInfo. Our inclusion criteria were publication in a peer-reviewed journal and collection of original, empirical data on rats using the handling method of tickling. One researcher extracted information from each article. Bias was assessed by 2 investigators using the SYRCLE bias assessment tool. Results We identified 32 articles (56 experiments) published in peer-reviewed journals about rat tickling for inclusion. A wide variety of strains, sexes, and ages of rats were included. The most common method used for tickling was cycling through 15 seconds of tickling and 15 seconds of rest for 2 minutes for 3 to 5 days. Experiments with a control for tickling (N = 22) showed that tickling increases positive vocalization, approach behavior, decreases anxiety measures, improves handling, and in some cases decreases stress hormones. Tickling juvenile, individually housed rats with a trait predisposition to respond more positively to tickling, results in the most positive outcomes. Methods to reduce bias were insufficiently reported. Conclusions We conclude that tickling is a promising method for improving rat welfare and investigating positive affect. However, the establishment of tickling best practices is essential as the outcomes from tickling can be moderated by several factors.
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Affiliation(s)
- Megan R. LaFollette
- Department of Animal Sciences, Center for Animal Welfare Science, College of Agriculture, Purdue University, West Lafayette, Indiana, United States of America
- * E-mail:
| | - Marguerite E. O’Haire
- Department of Comparative Pathobiology, Center for the Human-Animal Bond, College of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America
| | - Sylvie Cloutier
- Canadian Council on Animal Care, Assessment and Accreditation Section, Ottawa, ON, Canada
| | - Whitney B. Blankenberger
- Department of Comparative Medicine, Stanford University, Stanford, California, United States of America
| | - Brianna N. Gaskill
- Department of Animal Sciences, Center for Animal Welfare Science, College of Agriculture, Purdue University, West Lafayette, Indiana, United States of America
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Lampe JF, Burman O, Würbel H, Melotti L. Context-dependent individual differences in playfulness in male rats. Dev Psychobiol 2017; 59:460-472. [PMID: 28247407 DOI: 10.1002/dev.21509] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 01/19/2017] [Accepted: 02/03/2017] [Indexed: 11/11/2022]
Abstract
Play has been proposed as an indicator of positive emotions and welfare in higher vertebrates. This study investigated playfulness in male rats by exploring its consistency across motivational states (with/without prior short social isolation) and two age points at early and late adolescence. Twenty-four male Lister Hooded rats housed in cages of four underwent two play tests: conspecific Play-in-Pairs and Tickling by the experimenter, which were compared with play in the home cage and basal anxiety levels. Play-in-Pairs measures were consistent across age and motivational states, and were independent from anxiety. Positively valenced vocalizations in the Tickling test were also consistent across age, yet were negatively related to anxiety. Play-in-Pairs and Tickling play contexts, as well as social and solitary play types, were unrelated. Therefore, this study supports the existence of consistent individual differences in playfulness in rats, and suggests that different play contexts and types represent motivationally distinct systems.
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Affiliation(s)
- Jessica F Lampe
- Division of Animal Welfare, University of Bern, Bern, Switzerland
| | - Oliver Burman
- Joseph Banks Laboratories, School of Life Sciences, University of Lincoln, Lincoln, UK
| | - Hanno Würbel
- Division of Animal Welfare, University of Bern, Bern, Switzerland
| | - Luca Melotti
- Division of Animal Welfare, University of Bern, Bern, Switzerland
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Schneider BM, Erhard MH, Scheipl F, Küchenhoff H, Döring D. Comparison of 2 gentling programs for laboratory rats: Effects on the behavior toward humans. J Vet Behav 2016. [DOI: 10.1016/j.jveb.2015.12.006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Program animal welfare: Using behavioral and physiological measures to assess the well-being of animals used for education programs in zoos. Appl Anim Behav Sci 2016. [DOI: 10.1016/j.applanim.2015.12.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Playful handling of laboratory rats is more beneficial when applied before than after routine injections. Appl Anim Behav Sci 2015. [DOI: 10.1016/j.applanim.2014.12.012] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Kisko TM, Himmler BT, Himmler SM, Euston DR, Pellis SM. Are 50-kHz calls used as play signals in the playful interactions of rats? II. Evidence from the effects of devocalization. Behav Processes 2014; 111:25-33. [PMID: 25447515 DOI: 10.1016/j.beproc.2014.11.011] [Citation(s) in RCA: 63] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 10/13/2014] [Accepted: 11/11/2014] [Indexed: 12/15/2022]
Abstract
During playful interactions, juvenile rats emit many 50-kHz ultrasonic vocalizations, which are associated with a positive affective state. In addition, these calls may also serve a communicative role - as play signals that promote playful contact. Consistent with this hypothesis, a previous study found that vocalizations are more frequent prior to playful contact than after contact is terminated. The present study uses devocalized rats to test three predictions arising from the play signals hypothesis. First, if vocalizations are used to facilitate contact, then in pairs of rats in which one is devocalized, the higher frequency of pre-contact calling should only be present when the intact rat is initiating the approach. Second, when both partners in a playing pair are devocalized, the frequency of play should be reduced and the typical pattern of playful wrestling disrupted. Finally, when given a choice to play with a vocal and a non-vocal partner, rats should prefer to play with the one able to vocalize. The second prediction was supported in that the frequency of playful interactions as well as some typical patterns of play was disrupted. Even though the data for the other two predictions did not produce the expected findings, they support the conclusion that, in rats, 50-kHz calls are likely to function to maintain a playful mood and for them to signal to one another during play fighting.
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Affiliation(s)
- Theresa M Kisko
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada.
| | - Brett T Himmler
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Stephanie M Himmler
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - David R Euston
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
| | - Sergio M Pellis
- Department of Neuroscience, University of Lethbridge, Lethbridge, Alberta, Canada
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