AGFS: Adaptive Genetic Fuzzy System for medical data classification

Hybrid deep learning based stroke detection using CT images with routing in an IoT environment

Stroke remains a leading global health concern and early diagnosis and accurate identification of stroke lesions are essential for improving treatment outcomes and reducing long-term disabilities. Computed Tomography (CT) imaging is widely used in clinical settings for diagnosing stroke, assessing lesion size, and determining the severity. However, the accurate segmentation and early detection of stroke lesions in CT images remain challenging. Thus, a Jaccard_Residual SqueezeNet is proposed for predicting stroke from CT images with the integration of the Internet of Things (IoT). The Jaccard_Residual SqueezeNet is the integration of the Jaccard index in Residual SqueezeNet. Firstly, the brain CT image is routed to the Base Station (BS) using the Fractional Jellyfish Search Pelican Optimization Algorithm (FJSPOA) and preprocessing is accomplished by median filter. Then, the skull segmentation is accomplished by ENet and then feature extraction is done. Lastly, Stroke is detected using the Jaccard_Residual SqueezeNet. The values of throughput, energy, distance, trust, and delay determined in terms of routing are 72.172 Mbps, 0.580J, 22.243 m, 0.915, and 0.083S. Also, the accuracy, sensitivity, precision, and F1-score for stroke detection are 0.902, 0.896, 0.916, and 0.906. These findings suggest that Jaccard_Residual SqueezeNet offers a robust and efficient platform for stroke detection.

Flamingo Jelly Fish search optimization-based routing with deep-learning enabled energy prediction in WSN data communication

Nowadays, wireless sensor networks (WSN) have gained huge attention worldwide due to their wide applications in different domains. The limited amount of energy resources is considered as the main limitations of WSN, which generally affect the network life time. Hence, a dynamic clustering and routing model is designed to resolve this issue. In this research work, a deep-learning model is employed for the prediction of energy and an optimization algorithmic technique is designed for the determination of optimal routes. Initially, the dynamic cluster WSN is simulated using energy, mobility, trust, and Link Life Time (LLT) models. The deep neuro-fuzzy network (DNFN) is utilized for the prediction of residual energy of nodes and the cluster workloads are dynamically balanced by the dynamic clustering of data using a fuzzy system. The designed Flamingo Jellyfish Search Optimization (FJSO) model is used for tuning the weights of the fuzzy system by considering different fitness parameters. Moreover, routing is performed using FJSO model which is used for the identification of optimal path to transmit data. In addition, the experimentation is done using MATLAB tool and the results proved that the designed FJSO model attained maximum of 0.657J energy, a minimum of 0.739 m distance, 0.649 s delay, 0.849 trust, and 0.885 Mbps throughput.

A voting-based machine learning approach for classifying biological and clinical datasets

BACKGROUND

Different machine learning techniques have been proposed to classify a wide range of biological/clinical data. Given the practicability of these approaches accordingly, various software packages have been also designed and developed. However, the existing methods suffer from several limitations such as overfitting on a specific dataset, ignoring the feature selection concept in the preprocessing step, and losing their performance on large-size datasets. To tackle the mentioned restrictions, in this study, we introduced a machine learning framework consisting of two main steps. First, our previously suggested optimization algorithm (Trader) was extended to select a near-optimal subset of features/genes. Second, a voting-based framework was proposed to classify the biological/clinical data with high accuracy. To evaluate the efficiency of the proposed method, it was applied to 13 biological/clinical datasets, and the outcomes were comprehensively compared with the prior methods.

RESULTS

The results demonstrated that the Trader algorithm could select a near-optimal subset of features with a significant level of p-value < 0.01 relative to the compared algorithms. Additionally, on the large-sie datasets, the proposed machine learning framework improved prior studies by ~ 10% in terms of the mean values associated with fivefold cross-validation of accuracy, precision, recall, specificity, and F-measure.

CONCLUSION

Based on the obtained results, it can be concluded that a proper configuration of efficient algorithms and methods can increase the prediction power of machine learning approaches and help researchers in designing practical diagnosis health care systems and offering effective treatment plans.

Diagnosing Breast Cancer Based on the Adaptive Neuro-Fuzzy Inference System

In this work, a novel hybrid neuro-fuzzy classifier (HNFC) technique is proposed for producing more accuracy in input data classification. The inputs are fuzzified using a generalized membership function. The fuzzification matrix helps to create connectivity between input pattern and degree of membership to various classes in the dataset. According to that, the classification process is performed for the input data. This novel method is applied for ten number of benchmark datasets. During preprocessing, the missing data is replaced with the mean value. Then, the statistical correlation is applied for selecting the important features from the dataset. After applying a data transformation technique, the values normalized. Initially, fuzzy logic has been applied for the input dataset; then, the neural network is applied to measure the performance. The result of the proposed method is evaluated with supervised classification techniques such as radial basis function neural network (RBFNN) and adaptive neuro-fuzzy inference system (ANFIS). Classifier performance is evaluated by measures like accuracy and error rate. From the investigation, the proposed approach provided 86.2% of classification accuracy for the breast cancer dataset compared to other two approaches.

Deep Learning Neural Modelling as a Precise Method in the Assessment of the Chronological Age of Children and Adolescents Using Tooth and Bone Parameters

Dental age is one of the most reliable methods for determining a patient’s age. The timing of teething, the period of tooth replacement, or the degree of tooth attrition is an important diagnostic factor in the assessment of an individual’s developmental age. It is used in orthodontics, pediatric dentistry, endocrinology, forensic medicine, and pathomorphology, but also in scenarios regarding international adoptions and illegal immigrants. The methods used to date are time-consuming and not very precise. For this reason, artificial intelligence methods are increasingly used to estimate the age of a patient. The present work is a continuation of the work of Zaborowicz et al. In the presented research, a set of 21 original indicators was used to create deep neural network models. The aim of this study was to verify the ability to generate a more accurate deep neural network model compared to models produced previously. The quality parameters of the produced models were as follows. The MAE error of the produced models, depending on the learning set used, was between 2.34 and 4.61 months, while the RMSE error was between 5.58 and 7.49 months. The correlation coefficient R² ranged from 0.92 to 0.96.

Tooth and Bone Parameters in the Assessment of the Chronological Age of Children and Adolescents Using Neural Modelling Methods

The analog methods used in the clinical assessment of the patient's chronological age are subjective and characterized by low accuracy. When using those methods, there is a noticeable discrepancy between the chronological age and the age estimated based on relevant scientific studies. Innovations in the field of information technology are increasingly used in medicine, with particular emphasis on artificial intelligence methods. The paper presents research aimed at developing a new, effective methodology for the assessment of the chronological age using modern IT methods. In this paper, a study was conducted to determine the features of pantomographic images that support the determination of metric age, and neural models were produced to support the process of identifying the age of children and adolescents. The whole conducted work was a new methodology of metric age assessment. The result of the conducted study is a set of 21 original indicators necessary for the assessment of the chronological age with the use of computer image analysis and neural modelling, as well as three non-linear models of radial basis function networks (RBF), whose accuracy ranges from 96 to 99%. The result of the research are three neural models that determine the chronological age.

Diagnosis of vertebral column pathologies using concatenated resampling with machine learning algorithms

Medical diagnosis through the classification of biomedical attributes is one of the exponentially growing fields in bioinformatics. Although a large number of approaches have been presented in the past, wide use and superior performance of the machine learning (ML) methods in medical diagnosis necessitates significant consideration for automatic diagnostic methods. This study proposes a novel approach called concatenated resampling (CR) to increase the efficacy of traditional ML algorithms. The performance is analyzed leveraging four ML approaches like tree-based ensemble approaches, and linear machine learning approach for automatic diagnosis of inter-vertebral pathologies with increased. Besides, undersampling, over-sampling, and proposed CR techniques have been applied to unbalanced training dataset to analyze the impact of these techniques on the accuracy of each of the classification model. Extensive experiments have been conducted to make comparisons among different classification models using several metrics including accuracy, precision, recall, and F ₁ score. Comparative analysis has been performed on the experimental results to identify the best performing classifier along with the application of the re-sampling technique. The results show that the extra tree classifier achieves an accuracy of 0.99 in association with the proposed CR technique.

A Particle Fuzzy Decisive Framework for Moving Target Detection in the Multichannel SAR Framework

Target detection is one of the important subfields in the research of Synthetic Aperture Radar (SAR). It faces several challenges, due to the stationary objects, leading to the presence of scatter signal. Many researchers have succeeded on target detection, and this work introduces an approach for moving target detection in SAR. The newly developed scheme named Adaptive Particle Fuzzy System for Moving Target Detection (APFS-MTD) as the scheme utilizes the particle swarm optimization (PSO), adaptive, and fuzzy linguistic rules in APFS for identifying the target location. Initially, the received signals from the SAR are fed through the Generalized Radon-Fourier Transform (GRFT), Fractional Fourier Transform (FrFT), and matched filter to calculate the correlation using Ambiguity Function (AF). Then, the location of target is identified in the search space and is forwarded to the proposed APFS. The proposed APFS is the modification of standard Adaptive genetic fuzzy system using PSO. The performance of the MTD based on APFS is evaluated based on detection time, missed target rate, and Mean Square Error (MSE). The developed method achieves the minimal detection time of 4.13[Formula: see text]s, minimal MSE of 677.19, and the minimal moving target rate of 0.145, respectively.

Fuzzy Crow Search Algorithm-Based Deep LSTM for Bitcoin Prediction

Prediction of stock market trends is considered as an important task and is of great attention as predicting stock prices successfully may lead to attractive profits by making proper decisions. Stock market prediction is a major challenge owing to non-stationary, blaring, and chaotic data and thus, the prediction becomes challenging among the investors to invest the money for making profits. Initially, the blockchain network is fed to the blockchain network bridge from which the bitcoin data is acquired that is followed with the bitcoin prediction. Bitcoin prediction is performed using the proposed FuzzyCSA-based Deep Long short-term memory (LSTM). At first, the flow strength indicators are extracted based on Double exponential moving average (DEMA), Rate of Change (ROCR), Average True Range (ATR), Simple Moving Average (SMA), and Moving Average Convergence Divergence (MACD) from the blockchain data. Based on the extracted features, the prediction is done using FuzzyCSA-based Deep LSTM, which is the combination of FuzzyCSA with Deep LSTM. Then, the CSA is modified using the fuzzy operator for determining the optimal weights in Deep LSTM. The experimentation of the proposed method is performed from the openly available dataset. The analysis of the method in terms of Mean Absolute Error (MAE), and Root Mean Square Error (RMSE) reveals that the proposed FuzzyCSA-based Deep LSTM acquired a minimal MAE of 0.4811, and the minimal RMSE of 0.3905, respectively.

World competitive contest-based artificial neural network: A new class-specific method for classification of clinical and biological datasets

Many data mining methods have been proposed to generate computer-aided diagnostic systems, which may determine diseases in their early stages by categorizing the data into some proper classes. Considering the importance of the existence of a suitable classifier, the present study aims to introduce an efficient approach based on the World Competitive Contests (WCC) algorithm as well as a multi-layer perceptron artificial neural network (ANN). Unlike the previously introduced methods, which each has developed a universal model for all different kinds of data classes, our proposed approach generates a single specific model for each individual class of data. The experimental results show that the proposed method (ANNWCC), which can be applied to both the balanced and unbalanced datasets, yields more than 76% (without applying feature selection methods) and 90% (with applying feature selection methods) of the average five-fold cross-validation accuracy on the 13 clinical and biological datasets. The findings also indicate that under different conditions, our proposed method can produce better results in comparison to some state-of-art meta-heuristic algorithms and methods in terms of various statistical and classification measurements. To classify the clinical and biological data, a multi-layer ANN and the WCC algorithm were combined. It was shown that developing a specific model for each individual class of data may yield better results compared with creating a universal model for all of the existing data classes. Besides, some efficient algorithms proved to be essential to generate acceptable biological results, and the methods' performance was found to be enhanced by fuzzifying or normalizing the biological data.

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We combined multi-layer artificial neural networks and world competitive contests algorithms to classify biological datasets

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The proposed method has been investigated on 13 clinical datasets with different properties

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Efficient models may yield better classification models and health diagnostic systems

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Feature selection methods can improve the performance of a model in separating case and control samples

GFNB: Gini index-based Fuzzy Naive Bayes and blast cell segmentation for leukemia detection using multi-cell blood smear images

The blood cell counting and classification ensures the evaluation and diagnosis of a number of diseases. The analysis of white blood cells (WBCs) permits us to detect the acute lymphoblastic leukemia (ALL), a type of blood cancer that causes fatality when untreated. At present, the morphological analysis of blood cells is performed manually by skilled operators, which holds numerous drawbacks. The manual techniques for leukemia detection are time-consuming and show less accurate results. Hence, there is a need for an automatic method for detecting leukemia. In order to overcome the demerits associated with the manual methods of counting and classifying, an automatic method of blast cell counting and leukemia classification is progressed. This paper proposes a leukemia detection method, using the Gini index-based Fuzzy Naive Bayes (GFNB) classifier that is the integration of Gini index and Fuzzy Naive Bayes classifier. Initially, the input multi-cell blood smear image is subjected to pre-processing, and the blast cell is segmented using the adaptive thresholding. Then, the blast cells are counted using the proposed classifier so as to decide the presence of leukemia for the effective diagnosis. Experimental analysis using the ALL-IDB1 database confirms that the proposed method operates better than the existing methods in terms of accuracy, specificity, and sensitivity that are found to be 0.9591, 0.9599, and 1, respectively. The experimental results reveal that the proposed method is reliable and accurate. Also, the proposed system can help the physicians to improve and speed up their process.Graphical abstract Leukemia is caused by the excess production of the immature leucocytes in the bone marrow that expose the human body to lose the tendency to fight against the diseases. Leukemia classification is highly needed as in the later stage, failure of the diagnosis steps may lead to the death of the person. Moreover, some countries do not have any study against the diagnosis steps of leukemia and it highly exists among the low-income people. In order to analyze the type of leukemia and to provide an effective diagnosis strategy, the paper presents a fast and highly accurate classification method. The main aim of the paper is to propose a method to perform the leukemia classification through the segmentation and classification of the WBC cells using the multi-cell blood smear images. The major steps involved in the leukemia classification are pre-processing, segmentation, feature extraction, and classification. The input blood smear image is enhanced in the pre-processing step and the pre-processed image is subjected to segmentation using the LUV color transformation and Adaptive Thresholding strategy. The features are extracted from the individual segments and they are presented to the classifier for the classification. The features extracted are shape, texture, and count of the blast cells, for which the grid-based shape extraction, local gradient pattern (LGP)-based texture features, and pixel threshold-based counting of the blast cells are employed. The proposed classifier is developed using the Gini index and Fuzzy Naive Bayes classifier.

Fuzzy Inspired Deep Belief Network for the Traffic Flow Prediction in Intelligent Transportation System Using Flow Strength Indicators

Intelligent transportation system (ITS) is an advance leading edge technology that aims to deliver innovative services to different modes of transport and traffic management. Traffic flow prediction (TFP) is one of the key macroscopic parameters of traffic that supports traffic management in ITS. Growth of the real-time data in transportation from various modern equipments, technology, and other resources has led to generate big data, posing a huge concern to deal with. Recently, deep learning (DL) techniques have demonstrated the capability to extract comprehensive features efficiently, using multiple hidden layers, from such huge raw, unstructured, and nonlinear data. Nonlinearity in traffic data is the major cause of inaccuracy in TFP. In this article, we propose a flow strength indicator-based Chronological Dolphin Echolocation-Fuzzy, a bioinspired optimization method with fuzzy logic for incremental learning of deep belief network. Technical indicators provide flow strength features as an input to the model. Hidden layers of DL architecture consequently learn more features and propagate it as an input to next layer for supervised learning. The degree of membership to the features is identified by the membership functions, followed by weight optimization using Dolphin Echolocation algorithm to fit the model for the nonlinear data. Experiments performed on two different data sets, namely Traffic-major roads and performance measurement system-San Francisco (PEMS-SF), show good results for the proposed deep architecture. The analysis of the proposed method using log mean square error and log root mean square deviation acquires a minimum value of 2.4141 and 0.61 for the Traffic-major roads database taken for the time step duration of 1 year and a minimum value of 1.6691 and 0.5208 for PEMS-SF data set for the time step interval of 5 minutes, respectively. These positive results demonstrate key importance of our traffic flow model for the transportation system.

BGFS: Design and Development of Brain Genetic Fuzzy System for Data Classification

Recently, classification systems have received significant attention among researchers due to the important characteristics and behaviors of analysis required in real-time databases. Among the various classification-based methods suitable for real-time databases, fuzzy rule-based classification is effectively used by different researchers in various fields. An important issue in the design of fuzzy rule-based classification is the automatic generation of fuzzy if-then rules and the membership functions. The literature presents different techniques for automatic fuzzy design. Among the different techniques available in the literature, choosing the type, the number of membership functions, and defining parameters of membership function are still challenging tasks. In order to handle these challenges in the fuzzy rule-based classification system, this paper proposes a brain genetic fuzzy system (BGFS) for data classification by newly devising the exponential genetic brain storm optimization. Here, membership functions are optimally devised using exponential genetic brain storm optimization algorithm and rules are derived using the exponential brain storm optimization algorithm. The designed membership function and fuzzy rules are then effectively utilized for data classification. The proposed BGFS is analyzed with four datasets, using sensitivity, specificity, and accuracy. The outcome ensures that the proposed BGFS obtained the maximum accuracy of 88.8%, which is high as compared with the existing adaptive genetic fuzzy system.

BSFS: Design and Development of Exponential Brain Storm Fuzzy System for Data Classification

The inductive learning of fuzzy rule classifier suffers in the rule generation and rule optimization when the search space or variables becomes high. This creates the new idea of making the fuzzy system with precise rules leading to less scalability and improved accuracy. Accordingly, different approaches have been presented in the literature for optimal finding of fuzzy rules using optimization algorithms. Here, we make use of the brain storm optimization algorithm for rule optimization. In this paper, a new fuzzy system called, exponential brain storm fuzzy system is developed by modifying the traditional fuzzy system in rule definition process. In rule derivation, we have presented an algorithm called, EBSO by modifying the BSO algorithm with exponential model. Also, the membership function is designed using simple uniform distribution-based approach. Finally, data classification is performed with a new BSFS system using three medical databases such as, PID, Cleveland and DRD. The experimentation proved that the proposed BSFS clearly outperformed in all the three datasets by reaching the maximum accuracy.

Using a genetic-fuzzy algorithm as a computer aided diagnosis tool on Saudi Arabian breast cancer database

The computer-aided diagnosis has become one of the major research topics in medical diagnostics. In this research paper, we focus on designing an automated computer diagnosis by combining two major methodologies, namely the fuzzy base systems and the evolutionary genetic algorithms and applying them to the Saudi Arabian breast cancer diagnosis database, to be employed for assisting physicians in the early detection of breast cancers, and hence obtaining an early-computerized diagnosis complementary to that by physicians. Our hybrid algorithm, the genetic-fuzzy algorithm, has produced optimized diagnosis systems that attain high classification performance, in fact, our best three rule system obtained a 97% accuracy, with simple and well interpretive rules, and with a good degree of confidence of 91%.

SM-RuleMiner: Spider monkey based rule miner using novel fitness function for diabetes classification

Diabetes is a major health challenge around the world. Existing rule-based classification systems have been widely used for diabetes diagnosis, even though they must overcome the challenge of producing a comprehensive optimal ruleset while balancing accuracy, sensitivity and specificity values. To resolve this drawback, in this paper, a Spider Monkey Optimization-based rule miner (SM-RuleMiner) has been proposed for diabetes classification. A novel fitness function has also been incorporated into SM-RuleMiner to generate a comprehensive optimal ruleset while balancing accuracy, sensitivity and specificity. The proposed rule-miner is compared against three rule-based algorithms, namely ID3, C4.5 and CART, along with several meta-heuristic-based rule mining algorithms, on the Pima Indians Diabetes dataset using 10-fold cross validation. It has been observed that the proposed rule miner outperforms several well-known algorithms in terms of average classification accuracy and average sensitivity. Moreover, the proposed rule miner outperformed the other algorithms in terms of mean rule length and mean ruleset size.

CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules

MOTIVATION

Nowadays, knowledge extraction methods from Next Generation Sequencing data are highly requested. In this work, we focus on RNA-seq gene expression analysis and specifically on case-control studies with rule-based supervised classification algorithms that build a model able to discriminate cases from controls. State of the art algorithms compute a single classification model that contains few features (genes). On the contrary, our goal is to elicit a higher amount of knowledge by computing many classification models, and therefore to identify most of the genes related to the predicted class.

RESULTS

We propose CAMUR, a new method that extracts multiple and equivalent classification models. CAMUR iteratively computes a rule-based classification model, calculates the power set of the genes present in the rules, iteratively eliminates those combinations from the data set, and performs again the classification procedure until a stopping criterion is verified. CAMUR includes an ad-hoc knowledge repository (database) and a querying tool.We analyze three different types of RNA-seq data sets (Breast, Head and Neck, and Stomach Cancer) from The Cancer Genome Atlas (TCGA) and we validate CAMUR and its models also on non-TCGA data. Our experimental results show the efficacy of CAMUR: we obtain several reliable equivalent classification models, from which the most frequent genes, their relationships, and the relation with a particular cancer are deduced.

AVAILABILITY AND IMPLEMENTATION

dmb.iasi.cnr.it/camur.php

CONTACT

emanuel@iasi.cnr.it

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.