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Chang X, Hallais S, Danas K, Roux S. PeakForce AFM Analysis Enhanced with Model Reduction Techniques. SENSORS (BASEL, SWITZERLAND) 2023; 23:4730. [PMID: 37430644 DOI: 10.3390/s23104730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 04/28/2023] [Accepted: 05/11/2023] [Indexed: 07/12/2023]
Abstract
PeakForce quantitative nanomechanical AFM mode (PF-QNM) is a popular AFM technique designed to measure multiple mechanical features (e.g., adhesion, apparent modulus, etc.) simultaneously at the exact same spatial coordinates with a robust scanning frequency. This paper proposes compressing the initial high-dimensional dataset obtained from the PeakForce AFM mode into a subset of much lower dimensionality by a sequence of proper orthogonal decomposition (POD) reduction and subsequent machine learning on the low-dimensionality data. A substantial reduction in user dependency and subjectivity of the extracted results is obtained. The underlying parameters, or "state variables", governing the mechanical response can be easily extracted from the latter using various machine learning techniques. Two samples are investigated to illustrate the proposed procedure (i) a polystyrene film with low-density polyethylene nano-pods and (ii) a PDMS film with carbon-iron particles. The heterogeneity of material, as well as the sharp variation in topography, make the segmentation challenging. Nonetheless, the underlying parameters describing the mechanical response naturally offer a compact representation allowing for a more straightforward interpretation of the high-dimensional force-indentation data in terms of the nature (and proportion) of phases, interfaces, or topography. Finally, those techniques come with a low processing time cost and do not require a prior mechanical model.
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Affiliation(s)
- Xuyang Chang
- Université Paris-Saclay/CentraleSupélec/ENS Paris-Saclay/C.N.R.S., LMPS-Laboratoire de Mécanique Paris-Saclay, 91190 Gif-sur-Yvette, France
- LMS, C.N.R.S., École Polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau, France
| | - Simon Hallais
- LMS, C.N.R.S., École Polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau, France
| | - Kostas Danas
- LMS, C.N.R.S., École Polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau, France
| | - Stéphane Roux
- Université Paris-Saclay/CentraleSupélec/ENS Paris-Saclay/C.N.R.S., LMPS-Laboratoire de Mécanique Paris-Saclay, 91190 Gif-sur-Yvette, France
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Chandra A, Verma S, Raghuvanshi A, Kuber Bodhey N. PCcS-RAU-Net: Automated parcellated Corpus callosum segmentation from brain MRI images using modified residual attention U-Net. Biocybern Biomed Eng 2023. [DOI: 10.1016/j.bbe.2023.02.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2023]
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Kaur R, Khehra BS. Automated Knowledge Extraction of Liver Cysts From CT Images Using Modified Whale Optimization and Fuzzy C Means Clustering Algorithm. INTERNATIONAL JOURNAL OF INFORMATION SYSTEM MODELING AND DESIGN 2022. [DOI: 10.4018/ijismd.306644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In this study, the integrated modified whale optimization and modified fuzzy c-means clustering algorithm using morphological operations are developed and implemented for appropriate knowledge extraction of a cyst from computer tomography (CT) images of the liver to facilitate modern intelligent healthcare systems. The proposed approach plays an efficient role in diagnosing the liver cyst. To evaluate the efficiency, the outcomes of the proposed approach have been compared with the minimum cross entropy based modified whale optimization algorithm (MCE and MWOA), teaching-learning optimization algorithm based upon minimum cross entropy (MCE and TLBO), particle swarm intelligence algorithm (PSO), genetic algorithm (GA), differential evolution (DE) algorithm, and k-means clustering algorithm. For this, various parameters such as uniformity (U), mean structured similarity index (MSSIM), structured similarity index (SSIM), random index (RI), and peak signal-to-noise ratio (PSNR) have been considered. The experimental results show that the proposed approach is more efficient and accurate than others.
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Affiliation(s)
- Ramanjot Kaur
- Department of Computer Science and Engineering, I.K. Gujral Punjab Technical University, Jalandhar, India
| | - Baljit Singh Khehra
- Department of Computer Science and Engineering, Baba Banda Singh Bahadur Engineering College, Fatehgarh Sahib, India
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Modified Artificial Bee Colony Algorithm-Based Strategy for Brain Tumor Segmentation. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:5465279. [PMID: 35602633 PMCID: PMC9117055 DOI: 10.1155/2022/5465279] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 04/09/2022] [Accepted: 04/27/2022] [Indexed: 11/18/2022]
Abstract
Medical image segmentation is a technique for detecting boundaries in a 2D or 3D image automatically or semiautomatically. The enormous range of the medical image is a considerable challenge for image segmentation. Magnetic resonance imaging (MRI) scans to aid in the detection and existence of brain tumors. This approach, however, requires exact delineation of the tumor location inside the brain scan. To solve this, an optimization algorithm will be one of the most successful techniques for distinguishing pixels of interest from the background, but its performance is reliant on the starting values of the centroids. The primary goal of this work is to segment tumor areas within brain MRI images. After converting the gray MRI image to a color image, a multiobjective modified ABC algorithm is utilized to separate the tumor from the brain. The intensity determines the RGB color generated in the image. The simulation results are assessed in terms of performance metrics such as accuracy, precision, specificity, recall, F-measure, and the time in seconds required by the system to segment the tumor from the brain. The performance of the proposed algorithm is computed with other algorithms like the single-objective ABC algorithm and multiobjective ABC algorithm. The results prove that the proposed multiobjective modified ABC algorithm is efficient in analyzing and segmenting the tumor from brain images.
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Nillmani, Jain PK, Sharma N, Kalra MK, Viskovic K, Saba L, Suri JS. Four Types of Multiclass Frameworks for Pneumonia Classification and Its Validation in X-ray Scans Using Seven Types of Deep Learning Artificial Intelligence Models. Diagnostics (Basel) 2022; 12:652. [PMID: 35328205 PMCID: PMC8946935 DOI: 10.3390/diagnostics12030652] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 03/04/2022] [Accepted: 03/04/2022] [Indexed: 12/31/2022] Open
Abstract
Background and Motivation: The novel coronavirus causing COVID-19 is exceptionally contagious, highly mutative, decimating human health and life, as well as the global economy, by consistent evolution of new pernicious variants and outbreaks. The reverse transcriptase polymerase chain reaction currently used for diagnosis has major limitations. Furthermore, the multiclass lung classification X-ray systems having viral, bacterial, and tubercular classes—including COVID-19—are not reliable. Thus, there is a need for a robust, fast, cost-effective, and easily available diagnostic method. Method: Artificial intelligence (AI) has been shown to revolutionize all walks of life, particularly medical imaging. This study proposes a deep learning AI-based automatic multiclass detection and classification of pneumonia from chest X-ray images that are readily available and highly cost-effective. The study has designed and applied seven highly efficient pre-trained convolutional neural networks—namely, VGG16, VGG19, DenseNet201, Xception, InceptionV3, NasnetMobile, and ResNet152—for classification of up to five classes of pneumonia. Results: The database consisted of 18,603 scans with two, three, and five classes. The best results were using DenseNet201, VGG16, and VGG16, respectively having accuracies of 99.84%, 96.7%, 92.67%; sensitivity of 99.84%, 96.63%, 92.70%; specificity of 99.84, 96.63%, 92.41%; and AUC of 1.0, 0.97, 0.92 (p < 0.0001 for all), respectively. Our system outperformed existing methods by 1.2% for the five-class model. The online system takes <1 s while demonstrating reliability and stability. Conclusions: Deep learning AI is a powerful paradigm for multiclass pneumonia classification.
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Affiliation(s)
- Nillmani
- School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, India; (N.); (P.K.J.); (N.S.)
| | - Pankaj K. Jain
- School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, India; (N.); (P.K.J.); (N.S.)
| | - Neeraj Sharma
- School of Biomedical Engineering, Indian Institute of Technology (BHU), Varanasi 221005, India; (N.); (P.K.J.); (N.S.)
| | - Mannudeep K. Kalra
- Department of Radiology, Massachusetts General Hospital, Boston, MA 02115, USA;
| | - Klaudija Viskovic
- Department of Radiology and Ultrasound, University Hospital for Infectious Diseases, 10000 Zagreb, Croatia;
| | - Luca Saba
- Department of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 10015 Cagliari, Italy;
| | - Jasjit S. Suri
- Stroke Diagnostic and Monitoring Division, AtheroPoint, Roseville, CA 95661, USA
- Knowledge Engineering Center, Global Biomedical Technologies, Inc., Roseville, CA 95661, USA
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Maji D, Sigedar P, Singh M. Attention Res-UNet with Guided Decoder for semantic segmentation of brain tumors. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2021.103077] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Wen W. Sleep Quality Detection Based on EEG Signals Using Transfer Support Vector Machine Algorithm. Front Neurosci 2021; 15:670745. [PMID: 33967687 PMCID: PMC8104363 DOI: 10.3389/fnins.2021.670745] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Accepted: 03/15/2021] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND In recent years, with the acceleration of life rhythm and increased pressure, the problem of sleep disorders has become more and more serious. It affects people's quality of life and reduces work efficiency, so the monitoring and evaluation of sleep quality is of great significance. Sleep staging has an important reference value in sleep quality assessment. This article starts with the study of sleep staging to detect and analyze sleep quality. For the purpose of sleep quality detection, this article proposes a sleep quality detection method based on electroencephalography (EEG) signals. MATERIALS AND METHODS This method first preprocesses the EEG signals and then uses the discrete wavelet transform (DWT) for feature extraction. Finally, the transfer support vector machine (TSVM) algorithm is used to classify the feature data. RESULTS The proposed algorithm was tested using 60 pieces of data from the National Sleep Research Resource Library of the United States, and sleep quality was evaluated using three indicators: sensitivity, specificity, and accuracy. Experimental results show that the classification performance of the TSVM classifier is significantly higher than those of other comparison algorithms. This further validated the effectiveness of the proposed sleep quality detection method.
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Affiliation(s)
- Wu Wen
- Chongqing Technology and Business Institute, Chongqing, China
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Hua L, Gu Y, Gu X, Xue J, Ni T. A Novel Brain MRI Image Segmentation Method Using an Improved Multi-View Fuzzy c-Means Clustering Algorithm. Front Neurosci 2021; 15:662674. [PMID: 33841095 PMCID: PMC8029590 DOI: 10.3389/fnins.2021.662674] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2021] [Accepted: 02/22/2021] [Indexed: 12/18/2022] Open
Abstract
Background: The brain magnetic resonance imaging (MRI) image segmentation method mainly refers to the division of brain tissue, which can be divided into tissue parts such as white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF). The segmentation results can provide a basis for medical image registration, 3D reconstruction, and visualization. Generally, MRI images have defects such as partial volume effects, uneven grayscale, and noise. Therefore, in practical applications, the segmentation of brain MRI images has difficulty obtaining high accuracy. Materials and Methods: The fuzzy clustering algorithm establishes the expression of the uncertainty of the sample category and can describe the ambiguity brought by the partial volume effect to the brain MRI image, so it is very suitable for brain MRI image segmentation (B-MRI-IS). The classic fuzzy c-means (FCM) algorithm is extremely sensitive to noise and offset fields. If the algorithm is used directly to segment the brain MRI image, the ideal segmentation result cannot be obtained. Accordingly, considering the defects of MRI medical images, this study uses an improved multiview FCM clustering algorithm (IMV-FCM) to improve the algorithm’s segmentation accuracy of brain images. IMV-FCM uses a view weight adaptive learning mechanism so that each view obtains the optimal weight according to its cluster contribution. The final division result is obtained through the view ensemble method. Under the view weight adaptive learning mechanism, the coordination between various views is more flexible, and each view can be adaptively learned to achieve better clustering effects. Results: The segmentation results of a large number of brain MRI images show that IMV-FCM has better segmentation performance and can accurately segment brain tissue. Compared with several related clustering algorithms, the IMV-FCM algorithm has better adaptability and better clustering performance.
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Affiliation(s)
- Lei Hua
- School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China
| | - Yi Gu
- School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China
| | - Xiaoqing Gu
- School of Computer and Artificial Intelligence, Changzhou University, Changzhou, China
| | - Jing Xue
- Department of Nephrology, The Affiliated Wuxi People's Hospital of Nanjing Medical University, Wuxi, China
| | - Tongguang Ni
- School of Computer and Artificial Intelligence, Changzhou University, Changzhou, China
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