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For: Nolasco DO, Canduri F, Pereira JH, Cortinóz JR, Palma MS, Oliveira JS, Basso LA, de Azevedo WF, Santos DS. Crystallographic structure of PNP from Mycobacterium tuberculosis at 1.9Å resolution. Biochem Biophys Res Commun 2004;324:789-94. [PMID: 15474496 DOI: 10.1016/j.bbrc.2004.09.137] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2004] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Skácel J, Djukic S, Baszczyňski O, Kalčic F, Bílek T, Chalupský K, Kozák J, Dvořáková A, Tloušt'ová E, Král'ová Z, Šmídková M, Voldřich J, Rumlová M, Pachl P, Brynda J, Vučková T, Fábry M, Snášel J, Pichová I, Řezáčová P, Mertlíková-Kaiserová H, Janeba Z. Design, Synthesis, Biological Evaluation, and Crystallographic Study of Novel Purine Nucleoside Phosphorylase Inhibitors. J Med Chem 2023;66:6652-6681. [PMID: 37134237 DOI: 10.1021/acs.jmedchem.2c02097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
2
How Docking Programs Work. Methods Mol Biol 2019. [PMID: 31452097 DOI: 10.1007/978-1-4939-9752-7_3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
3
Bitencourt-Ferreira G, de Azevedo WF. Docking with GemDock. Methods Mol Biol 2019;2053:169-188. [PMID: 31452105 DOI: 10.1007/978-1-4939-9752-7_11] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
4
Bitencourt-Ferreira G, de Azevedo WF. SAnDReS: A Computational Tool for Docking. Methods Mol Biol 2019;2053:51-65. [PMID: 31452098 DOI: 10.1007/978-1-4939-9752-7_4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
5
Bitencourt-Ferreira G, Veit-Acosta M, de Azevedo WF. Van der Waals Potential in Protein Complexes. Methods Mol Biol 2019;2053:79-91. [PMID: 31452100 DOI: 10.1007/978-1-4939-9752-7_6] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
6
Bitencourt-Ferreira G, de Azevedo WF. Homology Modeling of Protein Targets with MODELLER. Methods Mol Biol 2019;2053:231-249. [PMID: 31452109 DOI: 10.1007/978-1-4939-9752-7_15] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
7
Bitencourt-Ferreira G, Veit-Acosta M, de Azevedo WF. Hydrogen Bonds in Protein-Ligand Complexes. Methods Mol Biol 2019;2053:93-107. [PMID: 31452101 DOI: 10.1007/978-1-4939-9752-7_7] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
8
Dalberto PF, Rodrigues-Junior V, Almeida Falcão VC, Pinto AFM, Abbadi BL, Bizarro CV, Basso LA, Villela AD, Santos DS. Assessing the role of deoD gene in Mycobacterium tuberculosis in vitro growth and macrophage infection. Microb Pathog 2018;119:60-64. [PMID: 29608932 DOI: 10.1016/j.micpath.2018.03.056] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 02/12/2018] [Accepted: 03/29/2018] [Indexed: 11/25/2022]
9
Caceres RA, Timmers LFSM, Ducati RG, da Silva DON, Basso LA, de Azevedo WF, Santos DS. Crystal structure and molecular dynamics studies of purine nucleoside phosphorylase from Mycobacterium tuberculosis associated with acyclovir. Biochimie 2011;94:155-65. [PMID: 22033138 DOI: 10.1016/j.biochi.2011.10.003] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2011] [Accepted: 10/11/2011] [Indexed: 11/30/2022]
10
Ducati RG, Basso LA, Santos DS, de Azevedo WF. Crystallographic and docking studies of purine nucleoside phosphorylase from Mycobacterium tuberculosis. Bioorg Med Chem 2010;18:4769-74. [DOI: 10.1016/j.bmc.2010.05.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Revised: 05/01/2010] [Accepted: 05/04/2010] [Indexed: 10/19/2022]
11
Zanchi FB, Caceres RA, Stabeli RG, de Azevedo WF. Molecular dynamics studies of a hexameric purine nucleoside phosphorylase. J Mol Model 2009;16:543-50. [PMID: 19669809 DOI: 10.1007/s00894-009-0557-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2009] [Accepted: 06/28/2009] [Indexed: 11/30/2022]
12
Ducati RG, Santos DS, Basso LA. Substrate specificity and kinetic mechanism of purine nucleoside phosphorylase from Mycobacterium tuberculosis. Arch Biochem Biophys 2009;486:155-64. [DOI: 10.1016/j.abb.2009.04.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2009] [Revised: 04/23/2009] [Accepted: 04/29/2009] [Indexed: 10/20/2022]
13
Basso LA, da Silva LHP, Fett-Neto AG, de Azevedo WF, Moreira IDS, Palma MS, Calixto JB, Astolfi Filho S, dos Santos RR, Soares MBP, Santos DS. The use of biodiversity as source of new chemical entities against defined molecular targets for treatment of malaria, tuberculosis, and T-cell mediated diseases: a review. Mem Inst Oswaldo Cruz 2005;100:475-506. [PMID: 16302058 DOI: 10.1590/s0074-02762005000600001] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
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