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Liu D, Wang L, Gou L, Lu Y, Ma Y, Yao S, Fan TP, Deng H, Cai Y. Hybrid Methylotrophic Pathway in Serratia marcescens for Sustainable Terpenoid Biosynthesis. ACS Synth Biol 2025. [PMID: 40207984 DOI: 10.1021/acssynbio.5c00116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2025]
Abstract
Terpenoids are valuable chemicals used across industries. Methanol, a nonsugar-based feedstock, offers an eco-friendly approach to terpenoid production. In this study, a hybrid methylotrophic pathway was engineered in Serratia marcescens (S. marcescens) HBQA7, which is tolerant to both methanol and terpenoid compounds. The pathway utilizes bacterial methanol dehydrogenase (Mdh) and yeast dihydroxyacetone synthase (Das) to produce monoterpenes and sesquiterpenes from methanol and xylose. 13C labeling experiments identified the optimal enzyme pair: Mdh from Acinetobacter gerneri and Das from Pichia angusta, achieving 7.63% 13C enrichment of the central metabolic intermediate pyruvate. Deletion of pentose phosphate pathway genes (rpiAB) enhanced methanol utilization, achieving 22.99% 13C enrichment. Optimization of the mevalonate (MVA) biosynthetic pathway enabled the production of 5.12 g/L mevalonate in shake flask culture from methanol and xylose. Further construction of a haloarchaea-type MVA pathway enabled the production of geraniol (574.12 mg/L) and (-)-α-bisabolol (1256.41 mg/L) in shake flask cultures. This study demonstrates the first methanol conversion into valuable terpenoids in S. marcescens.
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Affiliation(s)
- Di Liu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Long Wang
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Linbo Gou
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Yao Lu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Yongai Ma
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Songsong Yao
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
| | - Tai-Ping Fan
- Department of Pharmacology, University of Cambridge, Cambridge CB2 1T, U.K
- School of Health Sciences, Fuyao University of Science & Technology, Fuzhou 350300, China
| | - Huaxiang Deng
- College of Food Science and Engineering, Jilin University, Changchun 130062, China
| | - Yujie Cai
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, Wuxi 214122, China
- School of Health Sciences, Fuyao University of Science & Technology, Fuzhou 350300, China
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Liu D, Gou L, Sun T, Liu J, Fan TP, Deng H, Cai Y. Characterization and Application of a Stationary Phase Promoter Library from Serratia marcescens. ACS Synth Biol 2024; 13:969-972. [PMID: 38340070 DOI: 10.1021/acssynbio.3c00687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2024]
Abstract
Serratia marcescens has garnered increasing attention as a promising host for valuable compound production. However, the lack of an efficient gene regulation toolkit severely hampers its applications. Here, a library of stationary phase promoters was screened in S. marcescens HBA7 using RNA-seq and RT-qPCR, revealing a 43-fold regulatory range with the red fluorescent protein mKate2 as the reporter. The β-galactosidase was employed to demonstrate the universality in driving the expression of different proteins. The wide-ranging utility of these promoters in different hosts was demonstrated in Escherichia coli. Moreover, to assess their potential application, the strongest promoter, P2, was employed to express the swrW gene, resulting in a roughly 20-fold increase in serrawettin W1 production in S. marcescens HBQA7ΔswrW. In summary, this study successfully constructed a gradient-strength stationary phase promoter library, providing an effective toolkit for gene regulation and secondary metabolite production in diverse prokaryotes, including S. marcescens and E. coli.
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Affiliation(s)
- Di Liu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, No.1800 Lihu Avenue, Wuxi, Jiangsu 214122, China
| | - Linbo Gou
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, No.1800 Lihu Avenue, Wuxi, Jiangsu 214122, China
| | - Tingting Sun
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, No.1800 Lihu Avenue, Wuxi, Jiangsu 214122, China
| | - Jie Liu
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, No.1800 Lihu Avenue, Wuxi, Jiangsu 214122, China
| | - Tai-Ping Fan
- Department of Pharmacology, University of Cambridge, Cambridge CB2 1TN, U.K
| | - Huaxiang Deng
- Center for Synthetic Biochemistry, Shenzhen Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Yujie Cai
- The Key Laboratory of Industrial Biotechnology, Ministry of Education, School of Biotechnology, Jiangnan University, No.1800 Lihu Avenue, Wuxi, Jiangsu 214122, China
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López-Linares JC, Mateo Martínez A, Coca M, Lucas S, García-Cubero MT. Carrot Discard as a Promising Feedstock to Produce 2,3-Butanediol by Fermentation with P. polymyxa DSM 365. Bioengineering (Basel) 2023; 10:937. [PMID: 37627821 PMCID: PMC10451558 DOI: 10.3390/bioengineering10080937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/28/2023] [Accepted: 08/04/2023] [Indexed: 08/27/2023] Open
Abstract
The valorization of fruit and vegetable residues (such as carrot discard) and their microbial conversion into 2,3-butanediol (BDO) can be considered as a very interesting way to reduce food waste and sustainably originate high value-added products. This work analyzes the valorization of carrot discard as feedstock for 2,3-butanediol (BDO) production by Paenibacillus polymyxa DSM 365. The influences of stirring and the presence of tryptone (nitrogen source) are studied. Furthermore, in order to evaluate the influence of the pre-culture medium (nitrogen source, nutrients, and pH) and the substrate, fermentation assays in simple and mixture semi-defined media (glucose, fructose, and/or galactose) were also carried out. As a result, 18.8 g/L BDO, with a BDO yield of 0.43 g/g (86% of its theoretical value), could be obtained from carrot discard enzymatic hydrolysate at 100 rpm, no tryptone, and pre-culture Häßler medium. No hydrothermal pre-treatment was necessary for BDO production from carrot discard, which increases the profitability of the process. Therefore, 18.8 g BDO, as well as 2.5 g ethanol and 2.1 g acetoin by-products, could be obtained from 100 g of carrot discard (dry matter).
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Affiliation(s)
- Juan Carlos López-Linares
- Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain; (J.C.L.-L.); (A.M.M.); (M.C.); (S.L.)
- Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Adrián Mateo Martínez
- Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain; (J.C.L.-L.); (A.M.M.); (M.C.); (S.L.)
- Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Mónica Coca
- Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain; (J.C.L.-L.); (A.M.M.); (M.C.); (S.L.)
- Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - Susana Lucas
- Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain; (J.C.L.-L.); (A.M.M.); (M.C.); (S.L.)
- Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
| | - María Teresa García-Cubero
- Department of Chemical Engineering and Environmental Technology, School of Industrial Engineering, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain; (J.C.L.-L.); (A.M.M.); (M.C.); (S.L.)
- Institute of Sustainable Processes, University of Valladolid, Dr. Mergelina, s/n, 47011 Valladolid, Spain
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Souza BCD, Bossardi FF, Furlan GR, Folle AB, Reginatto C, Polidoro TA, Carra S, Silveira MMD, Malvessi E. Validated High-Performance Liquid Chromatographic (HPLC) Method for the Simultaneous Quantification of 2,3-Butanediol, Glycerol, Acetoin, Ethanol, and Phosphate in Microbial Cultivations. ANAL LETT 2021. [DOI: 10.1080/00032719.2020.1869754] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- Bruna Campos de Souza
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Flávia Frozza Bossardi
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Greice Ribeiro Furlan
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Analia Borges Folle
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Caroline Reginatto
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Tomás Augusto Polidoro
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Sabrina Carra
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
- Faculdade de Farmácia, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil
| | - Mauricio Moura da Silveira
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
| | - Eloane Malvessi
- Instituto de Biotecnologia, Laboratório de Bioprocessos, Universidade de Caxias do Sul (UCS), Caxias do Sul, RS, Brazil
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