Overview and emerging trends in optical fiber aptasensing

Insulin biotrapping using plasmofluidic optical fiber chips: A benchmark

Plasmonic optical fiber-based biosensors are currently in their early stages of development as practical and integrated devices, gradually making their way towards the market. While the majority of these biosensors operate using white light and multimode optical fibers (OFs), our approach centers on single-mode OFs coupled with tilted fiber Bragg gratings (TFBGs) in the near-infrared wavelength range. Our objective is to enhance surface sensitivity and broaden sensing capabilities of OF-based sensors to develop in situ sensing with remote interrogation. In this study, we comprehensively assess their performance in comparison to the gold-standard plasmonic reference, a commercial device based on the Kretschmann-Raether prism configuration. We present their refractive index sensitivity and their capability for insulin sensing using a dedicated microfluidics approach. By optimizing a consistent surface biotrapping methodology, we elucidate the dynamic facets of both technologies and highlight their remarkable sensitivity to variations in bulk and surface properties. The one-to-one comparison between both technologies demonstrates the reliability of optical fiber-based measurements, showcasing similar experimental trends obtained with both the prismatic configuration and gold-coated TFBGs, with an even enhanced limit of detection for the latter. This study lays the foundation for the detection of punctual molecular interactions and opens the way towards the detection of spatially and temporally localized events on the surface of optical probes.

Modular Aptamer Switches for the Continuous Optical Detection of Small-Molecule Analytes in Complex Media

Aptamers are a promising class of affinity reagents because signal transduction mechanisms can be built into the reagent, so that they can directly produce a physically measurable output signal upon target binding. However, endowing the signal transduction functionality into an aptamer remains a trial-and-error process that can compromise its affinity or specificity and typically requires knowledge of the ligand binding domain or its structure. In this work, a design architecture that can convert an existing aptamer into a "reversible aptamer switch" whose kinetic and thermodynamic properties can be tuned without a priori knowledge of the ligand binding domain or its structure is described. Finally, by combining these aptamer switches with evanescent-field-based optical detection hardware that minimizes sample autofluorescence, this study demonstrates the first optical biosensor system that can continuously measure multiple biomarkers (dopamine and cortisol) in complex samples (artificial cerebrospinal fluid and undiluted plasma) with second and subsecond-scale time responses at physiologically relevant concentration ranges.

From Whispering Gallery Mode Resonators to Biochemical Sensors

Optical biosensors are frontrunners for the rapid and real-time detection of analytes, particularly for low concentrations. Among them, whispering gallery mode (WGM) resonators have recently attracted a growing focus due to their robust optomechanical features and high sensitivity, measuring down to single binding events in small volumes. In this review, we provide a broad overview of WGM sensors along with critical advice and additional "tips and tricks" to make them more accessible to both biochemical and optical communities. Their structures, fabrication methods, materials, and surface functionalization chemistries are discussed. We propose this reflection under a pedagogical approach to describe and explain these biochemical sensors with a particular focus on the most recent achievements in the field. In addition to highlighting the advantages of WGM sensors, we also discuss and suggest strategies to overcome their current limitations, leaving room for further development as practical tools in various applications. We aim to provide new insights and combine different knowledge and perspectives to advance the development of the next generation of WGM biosensors. With their unique advantages and compatibility with different sensing modalities, these biosensors have the potential to become major game changers for biomedical and environmental monitoring, among many other relevant target applications.

Recent Progress in Functional-Nucleic-Acid-Based Fluorescent Fiber-Optic Evanescent Wave Biosensors

Biosensors capable of onsite and continuous detection of environmental and food pollutants and biomarkers are highly desired, but only a few sensing platforms meet the "2-SAR" requirements (sensitivity, specificity, affordability, automation, rapidity, and reusability). A fiber optic evanescent wave (FOEW) sensor is an attractive type of portable device that has the advantages of high sensitivity, low cost, good reusability, and long-term stability. By utilizing functional nucleic acids (FNAs) such as aptamers, DNAzymes, and rational designed nucleic acid probes as specific recognition ligands, the FOEW sensor has been demonstrated to be a general sensing platform for the onsite and continuous detection of various targets ranging from small molecules and heavy metal ions to proteins, nucleic acids, and pathogens. In this review, we cover the progress of the fluorescent FNA-based FOEW biosensor since its first report in 1995. We focus on the chemical modification of the optical fiber and the sensing mechanisms for the five above-mentioned types of targets. The challenges and prospects on the isolation of high-quality aptamers, reagent-free detection, long-term stability under application conditions, and high throughput are also included in this review to highlight the future trends for the development of FOEW biosensors capable of onsite and continuous detection.

Plasmonic biosensing with tilted fiber Bragg gratings interrogated using a 512-pixel spectrometer

Plasmonic tilted fiber Bragg gratings (TFBGs) are very efficient for fast, accurate, and minimally invasive biosensing. Their transmitted amplitude spectrum is a dense comb of narrowband cladding mode resonances (full width at half maximum < 1 nm) that is usually demodulated using highly resolved (wavelength resolution < 10 pm) devices. This work demonstrates the possibility of using a coarsely resolved spectrometer (166 pm) to read out the amplitude spectrum of a gold-coated TFBG. A refined analysis of the spectral content has allowed us to develop signal processing that provides a refractometric sensitivity of 2656 nm/RIU. This is a fivefold improvement compared to previously reported read-out techniques. Biosensing has then been successfully implemented with gold-coated TFBGs implemented in reflection mode for the detection of insulin, with specific antibodies grafted on the gold surface. Our experimental work is a first step toward the industrialization of the FBG technology, as it opens the door to fast parallel biosensing, profiting from the multiple sensing channels (up to 64) of the interrogator and its high processing speed (repetition rate up to 3 kHz).

Optical Biosensor for Ochratoxin A Detection in Grains Using an Enzyme-Mediated Click Reaction and Polystyrene Nanoparticles

Herein, we develop an optical biosensor for highly sensitive and facile detection of ochratoxin A (OTA) using an enzyme-mediated click reaction for signal amplification and polystyrene nanoparticles (PNPs) for signal readout. Alkaline phosphatase was employed to hydrolyze the ascorbic acid-phosphate to generate ascorbic acid, which reduces Cu(II) to Cu(I). Cu(I) can catalyze the click reaction between alkyne-functionalized magnetic beads and azide-functionalized PNPs to form complexes, while unbound PNPs acted as the signal probe. This strategy utilized the high efficiency of click chemistry and the inherent optical absorption properties of PNPs, which effectively improved the sensitivity of conventional immunoassays and simplified the procedures using magnetic separation technology. This optical biosensor enabled OTA detection in a linear range of 0.1 to 50 ng/mL with a detection limit of 54 pg/mL. Moreover, it has been successfully challenged with OTA detection in maize samples, revealing its potential as a promising tool for mycotoxin screening.

Phase interrogation of plasmonic tilted fiber Bragg grating biosensors through the Jones formalism

Gold-coated tilted fiber Bragg gratings (TFBG) are refined plasmonic biosensors, highly sensitive to surrounding refractive index (RI) changes. Their interrogation usually relies on insertion loss measurements for single input polarized light, limiting the set of exploitable features. To overcome this limitation, we trigger the Jones formalism to retrieve the polarization enabling optimized plasmonic excitation for both phase and amplitude measurements. We present an experimental phase shift with a sensitivity as high as 45835^°/RIU and further assess this approach to HER2 proteins sensing at 1µg/ml. We compare this angular modality with the one relying on the insertion loss using a quality factor that takes the shift as well as the dispersion into account. This strengthens its relevance in terms of precision for ultra-small RI variations.

Smartphone based aptasensors as intelligent biodevice for food contamination detection in food and soil samples: Recent advances

Nowadays, the integration of conventional analytical approaches with smartphones has been developed novel, emerging and affordable devices for improving on-site detection platforms in the fields of food safety. Smartphone-based aptasensors as the next generation of portable aptasensing technique has attracted considerable attention as it offers a semi-automated user interface that can be exploited by inexpert characters. Wireless data transferability is an undeniable advantage that home-testing platforms have as well as it can suggest high computational power. In addition, these types of biodevices can provide real-time monitoring in terms of exchanging digital networks in real-time. To elaborate, the ability of smartphones to connect through the Internet is one of the most critical advantages of smartphone-based aptasensor that can be uploaded to Cloud databases and results can be disseminated as spatio-temporal maps across the globe. This review focused on the recent progress and technical breakthroughs of aptasensor on the smartphone as a groundbreaking enterprise in the field of biochemical analysis, importantly in the aspect of the combination of different types of biosensors including electrochemical, optical and colorimetric. In our opinion, this review can broaden our understanding of using smartphones as a portable sensing approach by addressing the current challenges and future perspectives.

A method for the controllable fabrication of optical fiber-based localized surface plasmon resonance sensors

Optical fiber-based Localized Surface Plasmon Resonance (OF-LSPR) biosensors have emerged as an ultra-sensitive miniaturized tool for a great variety of applications. Their fabrication by the chemical immobilization of gold nanoparticles (AuNPs) on the optic fiber end face is a simple and versatile method. However, it can render poor reproducibility given the number of parameters that influence the binding of the AuNPs. In order to develop a method to obtain OF-LSPR sensors with high reproducibility, we studied the effect that factors such as temperature, AuNPs concentration, fiber core size and time of immersion had on the number and aggregation of AuNPs on the surface of the fibers and their resonance signal. Our method consisted in controlling the deposition of a determined AuNPs density on the tip of the fiber by measuring its LSPR signal (or plasmonic signal, Sp) in real-time. Sensors created thus were used to measure changes in the refractive index of their surroundings and the results showed that, as the number of AuNPs on the probes increased, the changes in the Sp maximum values were ever lower but the wavelength shifts were higher. These results highlighted the relevance of controlling the relationship between the sensor composition and its performance.

Partially gold-coated tilted FBGs for enhanced surface biosensing

To date, there is clear experimental evidence that gold-coated tilted fiber Bragg gratings (TFBGs) are highly sensitive plasmonic biosensors that provide temperature-compensated detection of analytes at concentrations in the picomolar range. As most optical biosensors, they bring an evanescent wave in the surrounding medium, which makes them sensitive to both surface refractive index variations (= the useful biosensing signal) and to bulk refractive index changes (= the non-useful signal for biosensing). This dual sensitivity makes them prone to drift. In this work, we study partially gold-coated TFBGs around their cross-section. These gratings present the ability to discriminate both volume and surface refractive index changes, which is interesting in biosensing to enhance the signal-to-noise ratio. The effects induced in the TFBGs transmitted amplitude spectra were analyzed for surrounding refractive index (SRI) changes in the range 1.3360-1.3370. Then, the gold film was biofunctionalized with human epidermal growth factor receptor (HER2) aptamers using thiol chemistry. The detection of HER2 proteins (a relevant cancer biomarker) at 10^-9 g/mL, 10^-8 g/mL and 10^-6 g/mL demonstrated the advantage to identify environmental perturbations through the bare area of the TFBGs, which is left not functionalized. The non-specific drifts that could exist in samples are eliminated and a wavelength shift only related to the surface modification is obtained.

A Review of Apta-POF-Sensors: The Successful Coupling between Aptamers and Plastic Optical Fibers for Biosensing Applications

Aptamers represent the next frontier as biorecognition elements in biosensors thanks to a smaller size and lower molecular weight with respect to antibodies, more structural flexibility with the possibility to be regenerated, reduced batch-to-batch variation, and a potentially lower cost. Their high specificity and small size are particularly interesting for their application in optical biosensors since the perturbation of the evanescent field are low. Apart from the conventional plasmonic optical sensors, platforms based on silica and plastic optical fibers represent an interesting class of devices for point-of-care testing (POCT) in different applications. The first example of the coupling between aptamers and silica optical fibers was reported by Pollet in 2009 for the detection of IgE molecules. Six years later, the first example was published using a plastic optical fiber (POF) for the detection of Vascular Endothelial Growth Factor (VEGF). The excellent flexibility, great numerical aperture, and the large diameter make POFs extremely promising to be coupled to aptamers for the development of a sensitive platform easily integrable in portable, small-size, and simple devices. Starting from silica fiber-based surface plasmon resonance devices, here, a focus on significant biological applications based on aptamers, combined with plasmonic-POF probes, is reported.

Studying the effect of polymethyl methacrylate polymer opticals fibers (POFs) on the performance of composite materials based on the polyether ether ketone (PEEK) polymer matrix

More recently, various techniques have been implemented for the sensors manufacturing purpose, such as fiber Bragg gratings fibers (FBG) that allows variable core refractive index suitable for a large scale of measurements types, fiber optic evanescent waves (FOEW) for water parameters measurement, microstructured and crystal photonic optical fibers, polymers optical fiber (POFs), and so on. In this perspective, the objective of this work is to study the reliability and the origin of the resistance of each fiber-matrix interface of the composite materials PMMA/PEEK, Topas/PEEK, and Topas-Zeonex/PEEK. The genetic simulation is based on the probabilistic approach of Weibull to calculate the damage at the interface by crossing the two damages of the matrix and the fiber respectively. The results show that the PMMA/PEEK composite is the most resistant to the mechanical stresses applied compared to those Topas/PEEK and Topas-Zeonex/PEEK; these results were confirmed by the level of damage to the interface observed for the studied materials. The performed calculations are in good agreement with the analytical results of Cox, where he demonstrated that Young's modulus of fibers have an important influence on the shear strength of the fiber-matrix interface of composite materials. Based on the obtained results, the present study gives the opportunity for the proposed materials (PMMA/PEEK and Zeonex/PEEK) to be as potential candidates for the smart digital applications and telecoms aims.