Patient-specific seizure detection in long-term EEG using wavelet decomposition

Seizure detection using nonlinear measures over EEG frequency bands and deep learning classifiers

Epilepsy is a brain disorder that causes patients to suffer from convulsions, which affects their behavior and way of life. Epilepsy can be detected with electroencephalograms (EEGs), which record brain neural activity. Traditional approaches for detecting epileptic seizures from an EEG signal are time-consuming and annoying. To supersede these traditional methods, a myriad of automated seizure detection frameworks based on machine learning techniques have recently been developed. Feature extraction and classification are the two essential phases for seizure detection. The classifier assigns the proper class label after feature extraction lowers the input pattern space while maintaining useful features. This paper proposes a new feature extraction method based on calculating nonlinear features from the most relevant EEG frequency bands. The EEG signal is first decomposed into smaller time segments from which a vector of nonlinear features is computed and supplied to machine learning (ML) and deep learning (DL) classifiers. Experiments on the Bonn dataset reveals an accuracy of 99.7% reached in classifying normal and ictal EEG signals; and an accuracy of 98.8% in the discrimination of ictal and interictal EEG signals. Furthermore, a performance of 100% is achieved on the Hauz Khas dataset. The classification results of the proposed approach were compared to those from published state of the art techniques. Our results are equivalent to or better than some recent studies appeared in the literature.

Automatic seizure detection and classification using super-resolution superlet transform and deep neural network -A preprocessing-less method

CONTEXT

Epilepsy, characterized by recurrent seizures, is a chronic brain disease that affects approximately 50 million. Recurrent seizures characterize it. A seizure, a burst of uncontrolled electrical activity between brain cells, results in temporary changes in behavior, level of consciousness, and involuntary movements. An accurate prediction of seizures can improve the standard of living in epileptic subjects. The increasing capabilities of machine learning and computer-assisted devices can detect seizures accurately with minimal human intervention.

PROPOSED APPROACH

This paper proposes a method to detect seizure and non-seizure events using superlet transform (SLT) and a deep convolution neural network: VGG-19. The electroencephalogram (EEG) dataset from the University of Bonn is used to validate the efficacy of the proposed method.

METHODOLOGY

SLT, a high-resolution time-frequency technique, converts EEG records into two-dimensional (2-D) images. SLT provides a high-resolution time-frequency representation reflecting the oscillation bursts in an EEG record. The time-frequency representations as 2-D images are fed to a pre-trained convolutional neural network: VGG-19. The last layers of VGG-19 are replaced with new layers to accommodate the different classification problems.

RESULTS

The proposed method achieved an accuracy of 100% for all seven seizure and non-seizure detection cases considered in this work. In the case of three and five-class classification problems, the proposed method has better accuracy than other existing methods. The CHB-MIT scalp EEG database is also used to assess the effectiveness of the proposed method, which achieved a classification accuracy of 94.3% in distinguishing between seizure and non-seizure events.

CONCLUSION

The results obtained using the proposed methodology show the efficacy of the proposed method in accurately detecting seizures and other brain activity with the least pre-processing and human involvement. The proposed method can assist medical practitioners by saving their effort and time.

EPViz: A flexible and lightweight visualizer to facilitate predictive modeling for multi-channel EEG

Scalp Electroencephalography (EEG) is one of the most popular noninvasive modalities for studying real-time neural phenomena. While traditional EEG studies have focused on identifying group-level statistical effects, the rise of machine learning has prompted a shift in computational neuroscience towards spatio-temporal predictive analyses. We introduce a novel open-source viewer, the EEG Prediction Visualizer (EPViz), to aid researchers in developing, validating, and reporting their predictive modeling outputs. EPViz is a lightweight and standalone software package developed in Python. Beyond viewing and manipulating the EEG data, EPViz allows researchers to load a PyTorch deep learning model, apply it to EEG features, and overlay the output channel-wise or subject-level temporal predictions on top of the original time series. These results can be saved as high-resolution images for use in manuscripts and presentations. EPViz also provides valuable tools for clinician-scientists, including spectrum visualization, computation of basic data statistics, and annotation editing. Finally, we have included a built-in EDF anonymization module to facilitate sharing of clinical data. Taken together, EPViz fills a much needed gap in EEG visualization. Our user-friendly interface and rich collection of features may also help to promote collaboration between engineers and clinicians.

Effects of Data Augmentation with the BNNSMOTE Algorithm in Seizure Detection Using 1D-MobileNet

Automatic seizure detection technology has important implications for reducing the workload of neurologists for epilepsy diagnosis and treatment. Due to the unpredictable nature of seizures, the imbalanced classification of seizure and nonseizure data continues to be challenging. In this work, we first propose a novel algorithm named the borderline nearest neighbor synthetic minority oversampling technique (BNNSMOTE) to address the imbalanced classification problem and improve seizure detection performance. The algorithm uses the nearest neighbor notion to generate nonseizure samples near the boundary, then determines the seizure samples that are difficult to learn at the boundary, and lastly selects seizure samples at random to be used in the synthesis of new samples. In view of the characteristic that electroencephalogram (EEG) signals are one-dimensional signals, we then develop a 1D-MobileNet model to validate the algorithm's performance. Results demonstrate that the proposed algorithm outperforms previous seizure detection methods on the CHB-MIT dataset, achieving an average accuracy of 99.40%, a recall value of 87.46%, a precision of 97.17%, and an F1-score of 91.90%, respectively. We also had considerable success when we used additional datasets for verification at the same time. Our algorithm's data augmentation effects are more pronounced and perform better at seizure detection than the existing imbalanced techniques. Besides, the model's parameters and calculation volume have been significantly reduced, making it more suitable for mobile terminals and embedded devices.

Seizure Prediction Based on Transformer Using Scalp Electroencephalogram

Epilepsy is a chronic and recurrent brain dysfunction disease. An acute epileptic attack will interfere with a patient’s normal behavior and consciousness, having a great impact on their life. The purpose of this study was to design a seizure prediction model to improve the quality of patients’ lives and assist doctors in making diagnostic decisions. This paper presents a transformer-based seizure prediction model. Firstly, the time-frequency characteristics of electroencephalogram (EEG) signals were extracted by short-time Fourier transform (STFT). Secondly, a three transformer tower model was used to fuse and classify the features of the EEG signals. Finally, when combined with the attention mechanism of transformer networks, the EEG signal was processed as a whole, which solves the problem of length limitations in deep learning models. Experiments were conducted with a Children’s Hospital Boston and the Massachusetts Institute of Technology database to evaluate the performance of the model. The experimental results show that, compared with previous EEG classification models, our model can enhance the ability to use time, frequency, and channel information from EEG signals to improve the accuracy of seizure prediction.

Comparison of Empirical Mode Decomposition, Wavelets, and Different Machine Learning Approaches for Patient-Specific Seizure Detection Using Signal-Derived Empirical Dictionary Approach

Analysis of long-term multichannel EEG signals for automatic seizure detection is an active area of research that has seen application of methods from different domains of signal processing and machine learning. The majority of approaches developed in this context consist of extraction of hand-crafted features that are used to train a classifier for eventual seizure detection. Approaches that are data-driven, do not use hand-crafted features, and use small amounts of patients' historical EEG data for classifier training are few in number. The approach presented in this paper falls in the latter category, and is based on a signal-derived empirical dictionary approach, which utilizes empirical mode decomposition (EMD) and discrete wavelet transform (DWT) based dictionaries learned using a framework inspired by traditional methods of dictionary learning. Three features associated with traditional dictionary learning approaches, namely projection coefficients, coefficient vector and reconstruction error, are extracted from both EMD and DWT based dictionaries for automated seizure detection. This is the first time these features have been applied for automatic seizure detection using an empirical dictionary approach. Small amounts of patients' historical multi-channel EEG data are used for classifier training, and multiple classifiers are used for seizure detection using newer data. In addition, the seizure detection results are validated using 5-fold cross-validation to rule out any bias in the results. The CHB-MIT benchmark database containing long-term EEG recordings of pediatric patients is used for validation of the approach, and seizure detection performance comparable to the state-of-the-art is obtained. Seizure detection is performed using five classifiers, thereby allowing a comparison of the dictionary approaches, features extracted, and classifiers used. The best seizure detection performance is obtained using EMD based dictionary and reconstruction error feature and support vector machine classifier, with accuracy, sensitivity and specificity values of 88.2, 90.3, and 88.1%, respectively. Comparison is also made with other recent studies using the same database. The methodology presented in this paper is shown to be computationally efficient and robust for patient-specific automatic seizure detection. A data-driven methodology utilizing a small amount of patients' historical data is hence demonstrated as a practical solution for automatic seizure detection.

Machine Learning-Based Epileptic Seizure Detection Methods Using Wavelet and EMD-Based Decomposition Techniques: A Review

Epileptic seizures are temporary episodes of convulsions, where approximately 70 percent of the diagnosed population can successfully manage their condition with proper medication and lead a normal life. Over 50 million people worldwide are affected by some form of epileptic seizures, and their accurate detection can help millions in the proper management of this condition. Increasing research in machine learning has made a great impact on biomedical signal processing and especially in electroencephalogram (EEG) data analysis. The availability of various feature extraction techniques and classification methods makes it difficult to choose the most suitable combination for resource-efficient and correct detection. This paper intends to review the relevant studies of wavelet and empirical mode decomposition-based feature extraction techniques used for seizure detection in epileptic EEG data. The articles were chosen for review based on their Journal Citation Report, feature selection methods, and classifiers used. The high-dimensional EEG data falls under the category of ‘3N’ biosignals—nonstationary, nonlinear, and noisy; hence, two popular classifiers, namely random forest and support vector machine, were taken for review, as they are capable of handling high-dimensional data and have a low risk of over-fitting. The main metrics used are sensitivity, specificity, and accuracy; hence, some papers reviewed were excluded due to insufficient metrics. To evaluate the overall performances of the reviewed papers, a simple mean value of all metrics was used. This review indicates that the system that used a Stockwell transform wavelet variant as a feature extractor and SVM classifiers led to a potentially better result.

Wavelet Power Spectral Domain Functional Principal Component Analysis for Feature Extraction of Epileptic EEGs

Feature extraction plays an important role in machine learning for signal processing, particularly for low-dimensional data visualization and predictive analytics. Data from real-world complex systems are often high-dimensional, multi-scale, and non-stationary. Extracting key features of this type of data is challenging. This work proposes a novel approach to analyze Epileptic EEG signals using both wavelet power spectra and functional principal component analysis. We focus on how the feature extraction method can help improve the separation of signals in a low-dimensional feature subspace. By transforming EEG signals into wavelet power spectra, the functionality of signals is significantly enhanced. Furthermore, the power spectra transformation makes functional principal component analysis suitable for extracting key signal features. Therefore, we refer to this approach as a double feature extraction method since both wavelet transform and functional PCA are feature extractors. To demonstrate the applicability of the proposed method, we have tested it using a set of publicly available epileptic EEGs and patient-specific, multi-channel EEG signals, for both ictal signals and pre-ictal signals. The obtained results demonstrate that combining wavelet power spectra and functional principal component analysis is promising for feature extraction of epileptic EEGs. Therefore, they can be useful in computer-based medical systems for epilepsy diagnosis and epileptic seizure detection problems.

Multifuse multilayer multikernel RVFLN+ of process modes decomposition and approximate entropy data from iEEG/sEEG signals for epileptic seizure recognition

In this paper, the extracted features using variational mode decomposition (VMD) and approximate entropy (ApEn) privileged information of the input EEG signals are combined with multilayer multikernel random vector functional link network plus (MMRVFLN+) classifier to recognize the epileptic seizure epochs efficaciously. In our experiment Bonn University single-channel intracranial electroencephalogram (iEEG) and Children's Hospital Boston-Massachusetts Institute of Technology (CHB-MIT) multichannel scalp EEG (sEEG) recordings are considered to evaluate the efficacy of the proposed method. The VMD is applied on chaotic, non-stationary, nonlinear, and complex EEG signal to decompose it into three band-limited intrinsic mode functions (BLIMFs). The Hilbert transform (HT) is applied on BLIMFs to extract informative spectral and temporal features. The ApEn is computed from the raw EEG signals as the privileged information and given to the multi-hidden layer structure to obtain the most discriminative compressed form. The scatter plots show the distinct nature of compressed privileged ApEn information among the seizure pattern classes. The linear as well as nonlinear mapping, local and global kernel function, high-learning speed, less computationally complex MMRVFLN+ classifier is proposed to recognize the seizure events accurately by importing the efficacious features with ApEn as the input. The advanced signal processing algorithm i.e., Hilbert Huang transform (HHT) with ApEn and MMRVFLN+ are combined to compare the performance with the proposed VMDHTApEn-MMRVFLN+ method. The proposed method has remarkable recognition ability, superior classification accuracy, and excellent overall performance as compared to other methods. The digital architecture of the multifuse MMRVFLN+ is developed and implemented on a high-speed reconfigurable FPGA hardware platform to validate the effectiveness of the proposed method. The superior classification accuracy, the negligible false positive rate per hour (FPR/h), simplicity, feasibility, robustness, and practicability of the proposed method validate its ability to recognize the epileptic seizure epochs automatically.

Feature Extraction of Epileptic EEG using Wavelet Power Spectra and Functional PCA

In this work, we propose a novel approach to analyze Epileptic EEG signals using wavelet power spectra and functional principal component analysis. Both continuous and discrete wavelet power spectra are considered. By transforming EEG signals into power spectra, we significantly enhance the functionality of random signals, which makes functional principal component analysis be a suitable technique for further extracting key signal features. We have tested our proposed method using a set of publicly available epileptic EEG. The obtained results demonstrate that wavelet power spectra and functional principal component analysis are promising for feature extraction of epileptic EEG, and they may be useful for epilepsy diagnosis problem.

Patient-Specific Seizure Detection Using Nonlinear Dynamics and Nullclines

Nonlinear dynamics has recently been extensively used to study epilepsy due to the complex nature of the neuronal systems. This study presents a novel method that characterizes the dynamic behavior of pediatric seizure events and introduces a systematic approach to locate the nullclines on the phase space when the governing differential equations are unknown. Nullclines represent the locus of points in the solution space where the components of the velocity vectors are zero. A simulation study over 5 benchmark nonlinear systems with well-known differential equations in three-dimensional exhibits the characterization efficiency and accuracy of the proposed approach that is solely based on the reconstructed solution trajectory. Due to their unique characteristics in the nonlinear dynamics of epilepsy, discriminative features can be extracted based on the nullclines concept. Using a limited training data (only 25% of each EEG record) in order to mimic the real-world clinical practice, the proposed approach achieves 91.15% average sensitivity and 95.16% average specificity over the benchmark CHB-MIT dataset. Together with an elegant computational efficiency, the proposed approach can, therefore, be an automatic and reliable solution for patient-specific seizure detection in long EEG recordings.