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Aetesam H, Maji SK. Perceptually Motivated Generative Model for Magnetic Resonance Image Denoising. J Digit Imaging 2023; 36:725-738. [PMID: 36474088 PMCID: PMC10039195 DOI: 10.1007/s10278-022-00744-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 11/01/2022] [Accepted: 11/17/2022] [Indexed: 12/12/2022] Open
Abstract
Image denoising is an important preprocessing step in low-level vision problems involving biomedical images. Noise removal techniques can greatly benefit raw corrupted magnetic resonance images (MRI). It has been discovered that the MR data is corrupted by a mixture of Gaussian-impulse noise caused by detector flaws and transmission errors. This paper proposes a deep generative model (GenMRIDenoiser) for dealing with this mixed noise scenario. This work makes four contributions. To begin, Wasserstein generative adversarial network (WGAN) is used in model training to mitigate the problem of vanishing gradient, mode collapse, and convergence issues encountered while training a vanilla GAN. Second, a perceptually motivated loss function is used to guide the training process in order to preserve the low-level details in the form of high-frequency components in the image. Third, batch renormalization is used between the convolutional and activation layers to prevent performance degradation under the assumption of non-independent and identically distributed (non-iid) data. Fourth, global feature attention module (GFAM) is appended at the beginning and end of the parallel ensemble blocks to capture the long-range dependencies that are often lost due to the small receptive field of convolutional filters. The experimental results over synthetic data and MRI stack obtained from real MR scanners indicate the potential utility of the proposed technique across a wide range of degradation scenarios.
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Affiliation(s)
- Hazique Aetesam
- Department of Computer Science and Engineering, Indian Institute of Technology Patna, Patna, 801106 India
| | - Suman Kumar Maji
- Department of Computer Science and Engineering, Indian Institute of Technology Patna, Patna, 801106 India
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2
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Dhas MM, Singh NS. Optimized Haar wavelet-based blood cell image denoising with improved multiverse optimization algorithm. COMPUTER METHODS IN BIOMECHANICS AND BIOMEDICAL ENGINEERING: IMAGING & VISUALIZATION 2022. [DOI: 10.1080/21681163.2022.2141658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- M. Mohana Dhas
- Department of Computer Science, Annai Velankanni College, Tholayavattam, India
| | - N. Suresh Singh
- Department of Computer Applications, Malankara Catholic College, Mariagri, India
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3
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Akbarimajd A, Hoertel N, Hussain MA, Neshat AA, Marhamati M, Bakhtoor M, Momeny M. Learning-to-augment incorporated noise-robust deep CNN for detection of COVID-19 in noisy X-ray images. JOURNAL OF COMPUTATIONAL SCIENCE 2022; 63:101763. [PMID: 35818367 PMCID: PMC9259198 DOI: 10.1016/j.jocs.2022.101763] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2022] [Revised: 05/16/2022] [Accepted: 06/21/2022] [Indexed: 05/05/2023]
Abstract
Deep convolutional neural networks (CNNs) are used for the detection of COVID-19 in X-ray images. The detection performance of deep CNNs may be reduced by noisy X-ray images. To improve the robustness of a deep CNN against impulse noise, we propose a novel CNN approach using adaptive convolution, with the aim to ameliorate COVID-19 detection in noisy X-ray images without requiring any preprocessing for noise removal. This approach includes an impulse noise-map layer, an adaptive resizing layer, and an adaptive convolution layer to the conventional CNN framework. We also used a learning-to-augment strategy using noisy X-ray images to improve the generalization of a deep CNN. We have collected a dataset of 2093 chest X-ray images including COVID-19 (452 images), non-COVID pneumonia (621 images), and healthy ones (1020 images). The architecture of pre-trained networks such as SqueezeNet, GoogleNet, MobileNetv2, ResNet18, ResNet50, ShuffleNet, and EfficientNetb0 has been modified to increase their robustness to impulse noise. Validation on the noisy X-ray images using the proposed noise-robust layers and learning-to-augment strategy-incorporated ResNet50 showed 2% better classification accuracy compared with state-of-the-art method.
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Affiliation(s)
- Adel Akbarimajd
- Department of Electrical and Computer Engineering, University of Mohaghegh Ardabili, Ardabil, Iran
| | - Nicolas Hoertel
- AP-HP.Centre, Département Médico-Universitaire de Psychiatrie et Addictologie, Hôpital Corentin-Celton, 92130 Issy-les-Moulineaux, France
- Université de Paris, Paris, France
- INSERM, Institut de Psychiatrie et Neurosciences de Paris, UMR_S1266, Paris, France
| | | | | | | | - Mahdi Bakhtoor
- Department of Computer Science, Shirvan Branch, Islamic Azad University, Shirvan, Iran
| | - Mohammad Momeny
- Department of Electrical and Computer Engineering, University of Mohaghegh Ardabili, Ardabil, Iran
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Guo S, Wang G, Han L, Song X, Yang W. COVID-19 CT image denoising algorithm based on adaptive threshold and optimized weighted median filter. Biomed Signal Process Control 2022; 75:103552. [PMID: 35186109 PMCID: PMC8847113 DOI: 10.1016/j.bspc.2022.103552] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 01/07/2022] [Accepted: 02/02/2022] [Indexed: 12/11/2022]
Abstract
CT image of COVID-19 is disturbed by impulse noise during transmission and acquisition. Aiming at the problem that the early lesions of COVID-19 are not obvious and the density is low, which is easy to confuse with noise. A median filtering algorithm based on adaptive two-stage threshold is proposed to improve the accuracy for noise detection. In the advanced stage of ground-glass lesion, the density is uneven and the boundary is unclear. It has similar gray value to the CT images of suspected COVID-19 cases such as adenovirus pneumonia and mycoplasma pneumonia (reticular shadow and strip shadow). Aiming at the problem that the traditional weighted median filter has low contrast and fuzzy boundary, an adaptive weighted median filter image denoising method based on hybrid genetic algorithm is proposed. The weighted denoising parameters can adaptively change according to the detailed information of lung lobes and ground-glass lesions, and it can adaptively match the cross and mutation probability of genetic combined with the steady-state regional population density, so as to obtain a more accurate COVID-19 denoised image with relatively few iterations. The simulation results show that the improved algorithm under different density of impulse noise is significantly better than other algorithms in peak signal-to-noise ratio (PSNR), image enhancement factor (IEF) and mean absolute error (MSE). While protecting the details of lesions, it enhances the ability of image denoising.
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Affiliation(s)
- Shuli Guo
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing, China
| | - Guowei Wang
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing, China
| | - Lina Han
- Department of Cardiology, The Second Medical Center, National Clinical Research Center for Geriatric Diseases, Chinese PLA General Hospital, Beijing, China
| | - Xiaowei Song
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing, China
| | - Wentao Yang
- State Key Laboratory of Intelligent Control and Decision of Complex Systems, School of Automation, Beijing Institute of Technology, Beijing, China
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Dewangan KK, Dewangan DK, Sahu SP, Janghel R. Breast cancer diagnosis in an early stage using novel deep learning with hybrid optimization technique. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 81:13935-13960. [PMID: 35233181 PMCID: PMC8874754 DOI: 10.1007/s11042-022-12385-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2021] [Revised: 01/17/2022] [Accepted: 01/21/2022] [Indexed: 05/17/2023]
Abstract
Breast cancer is one of the primary causes of death that is occurred in females around the world. So, the recognition and categorization of initial phase breast cancer are necessary to help the patients to have suitable action. However, mammography images provide very low sensitivity and efficiency while detecting breast cancer. Moreover, Magnetic Resonance Imaging (MRI) provides high sensitivity than mammography for predicting breast cancer. In this research, a novel Back Propagation Boosting Recurrent Wienmed model (BPBRW) with Hybrid Krill Herd African Buffalo Optimization (HKH-ABO) mechanism is developed for detecting breast cancer in an earlier stage using breast MRI images. Initially, the MRI breast images are trained to the system, and an innovative Wienmed filter is established for preprocessing the MRI noisy image content. Moreover, the projected BPBRW with HKH-ABO mechanism categorizes the breast cancer tumor as benign and malignant. Additionally, this model is simulated using Python, and the performance of the current research work is evaluated with prevailing works. Hence, the comparative graph shows that the current research model produces improved accuracy of 99.6% with a 0.12% lower error rate.
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Affiliation(s)
- Kranti Kumar Dewangan
- Department of Information Technology, National Institute of Technology, Raipur, Chhatisgarh 492010 India
| | - Deepak Kumar Dewangan
- Department of Information Technology, National Institute of Technology, Raipur, Chhatisgarh 492010 India
| | - Satya Prakash Sahu
- Department of Information Technology, National Institute of Technology, Raipur, Chhatisgarh 492010 India
| | - Rekhram Janghel
- Department of Information Technology, National Institute of Technology, Raipur, Chhatisgarh 492010 India
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Ullah F, Ansari SU, Hanif M, Ayari MA, Chowdhury MEH, Khandakar AA, Khan MS. Brain MR Image Enhancement for Tumor Segmentation Using 3D U-Net. SENSORS 2021; 21:s21227528. [PMID: 34833602 PMCID: PMC8624231 DOI: 10.3390/s21227528] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Revised: 11/07/2021] [Accepted: 11/09/2021] [Indexed: 11/16/2022]
Abstract
MRI images are visually inspected by domain experts for the analysis and quantification of the tumorous tissues. Due to the large volumetric data, manual reporting on the images is subjective, cumbersome, and error prone. To address these problems, automatic image analysis tools are employed for tumor segmentation and other subsequent statistical analysis. However, prior to the tumor analysis and quantification, an important challenge lies in the pre-processing. In the present study, permutations of different pre-processing methods are comprehensively investigated. In particular, the study focused on Gibbs ringing artifact removal, bias field correction, intensity normalization, and adaptive histogram equalization (AHE). The pre-processed MRI data is then passed onto 3D U-Net for automatic segmentation of brain tumors. The segmentation results demonstrated the best performance with the combination of two techniques, i.e., Gibbs ringing artifact removal and bias-field correction. The proposed technique achieved mean dice score metrics of 0.91, 0.86, and 0.70 for the whole tumor, tumor core, and enhancing tumor, respectively. The testing mean dice scores achieved by the system are 0.90, 0.83, and 0.71 for the whole tumor, core tumor, and enhancing tumor, respectively. The novelty of this work concerns a robust pre-processing sequence for improving the segmentation accuracy of MR images. The proposed method overcame the testing dice scores of the state-of-the-art methods. The results are benchmarked with the existing techniques used in the Brain Tumor Segmentation Challenge (BraTS) 2018 challenge.
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Affiliation(s)
- Faizad Ullah
- Artificial Intelligence in Healthcare, Intelligent Information Processing Lab, National Center of Artificial Intelligence, University of Engineering and Technology, Peshawar 25120, Pakistan;
- Faculty of Computer Science and Engineering, Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi 23640, Pakistan; (S.U.A.); (M.H.)
| | - Shahab U. Ansari
- Faculty of Computer Science and Engineering, Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi 23640, Pakistan; (S.U.A.); (M.H.)
| | - Muhammad Hanif
- Faculty of Computer Science and Engineering, Ghulam Ishaq Khan Institute of Engineering Sciences and Technology, Topi 23640, Pakistan; (S.U.A.); (M.H.)
| | - Mohamed Arselene Ayari
- Technology Innovation and Engineering Education, College of Engineering, Qatar University, Doha 2713, Qatar;
- Department of Civil and Architectural Engineering, College of Engineering, Qatar University, Doha 2713, Qatar
| | | | - Amith Abdullah Khandakar
- Department of Electrical Engineering, College of Engineering, Qatar University, Doha 2713, Qatar; (M.E.H.C.); (A.A.K.)
| | - Muhammad Salman Khan
- Artificial Intelligence in Healthcare, Intelligent Information Processing Lab, National Center of Artificial Intelligence, University of Engineering and Technology, Peshawar 25120, Pakistan;
- Department of Electrical Engineering (JC), University of Engineering and Technology, Peshawar 24241, Pakistan
- Correspondence:
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Ebrahimnejad J, Naghsh A. Adaptive Removal of high-density salt-and-pepper noise (ARSPN) for robust ROI detection used in watermarking of MRI images of the brain. Comput Biol Med 2021; 137:104831. [PMID: 34517161 DOI: 10.1016/j.compbiomed.2021.104831] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 08/15/2021] [Accepted: 09/02/2021] [Indexed: 10/20/2022]
Abstract
This paper presents a novel window-based method to remove high-density salt-and-pepper noise for optimal ROI (Region Of Interest) detection of brain MRI (Magnetic Resonance Imaging) images. The output of this system is used in watermarking and extracting hidden data in this type of image. In this method, for each pixel of the noisy input image, an adaptive n × n window is considered in the neighborhood of that pixel. If they are not noisy, the pixels of this window are weighted according to their distance from the desired pixel, and the weighted sum of the neighboring pixels is averaged. Then the noisy pixel replaces with the resulting value. This paper consists of three main sections: ROI detection, noise removal block, and evaluation of the proposed method against different densities of salt-and-pepper noise in the range of 1%-98%. ROI obtained by this method is the same before and after the noise. The final image has an acceptable PSNR (Peak Signal-to-Noise Ratio) for noise with various densities. Based on the experimental results obtained by the high efficient proposed noise removal method using 208 images from seven Databases (DBs), the maximum value is 61.7% for the 1% noise density and 26.4% for the 98% noise density.
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Affiliation(s)
- Javad Ebrahimnejad
- Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Iran.
| | - Alireza Naghsh
- Department of Electrical Engineering, Najafabad Branch, Islamic Azad University, Najafabad, Iran; Digital Processing and Machine Vision Research Center, Najafabad Branch, Islamic Azad University, Najafabad, Iran.
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Ilesanmi AE, Ilesanmi TO. Methods for image denoising using convolutional neural network: a review. COMPLEX INTELL SYST 2021. [DOI: 10.1007/s40747-021-00428-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
AbstractImage denoising faces significant challenges, arising from the sources of noise. Specifically, Gaussian, impulse, salt, pepper, and speckle noise are complicated sources of noise in imaging. Convolutional neural network (CNN) has increasingly received attention in image denoising task. Several CNN methods for denoising images have been studied. These methods used different datasets for evaluation. In this paper, we offer an elaborate study on different CNN techniques used in image denoising. Different CNN methods for image denoising were categorized and analyzed. Popular datasets used for evaluating CNN image denoising methods were investigated. Several CNN image denoising papers were selected for review and analysis. Motivations and principles of CNN methods were outlined. Some state-of-the-arts CNN image denoising methods were depicted in graphical forms, while other methods were elaborately explained. We proposed a review of image denoising with CNN. Previous and recent papers on image denoising with CNN were selected. Potential challenges and directions for future research were equally fully explicated.
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Aetesam H, Maji SK. Noise dependent training for deep parallel ensemble denoising in magnetic resonance images. Biomed Signal Process Control 2021. [DOI: 10.1016/j.bspc.2020.102405] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Thanh DNH, Hai NH, Prasath VBS, Hieu LM, Tavares JMRS. A two-stage filter for high density salt and pepper denoising. MULTIMEDIA TOOLS AND APPLICATIONS 2020; 79:21013-21035. [DOI: 10.1007/s11042-020-08887-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 03/23/2020] [Accepted: 03/27/2020] [Indexed: 02/07/2023]
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