Denoising of magnetic resonance imaging using Bayes shrinkage based fused wavelet transform and autoencoder based deep learning approach

Developments in Deep Learning Artificial Neural Network Techniques for Medical Image Analysis and Interpretation

Deep learning has revolutionised medical image analysis, offering the possibility of automated, efficient, and highly accurate diagnostic solutions. This article explores recent developments in deep learning techniques applied to medical imaging, including convolutional neural networks (CNNs) for classification and segmentation, recurrent neural networks (RNNs) for temporal analysis, autoencoders for feature extraction, and generative adversarial networks (GANs) for image synthesis and augmentation. Additionally, U-Net models for segmentation, vision transformers (ViTs) for global feature extraction, and hybrid models integrating multiple architectures are explored. The Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) process were used, and searches on PubMed, Google Scholar, and Scopus databases were conducted. The findings highlight key challenges such as data availability, interpretability, overfitting, and computational requirements. While deep learning has demonstrated significant potential in enhancing diagnostic accuracy across multiple medical imaging modalities-including MRI, CT, US, and X-ray-factors such as model trust, data privacy, and ethical considerations remain ongoing concerns. The study underscores the importance of integrating multimodal data, improving computational efficiency, and advancing explainability to facilitate broader clinical adoption. Future research directions emphasize optimising deep learning models for real-time applications, enhancing interpretability, and integrating deep learning with existing healthcare frameworks for improved patient outcomes.

A Comprehensive AI Framework for Superior Diagnosis, Cranial Reconstruction, and Implant Generation for Diverse Cranial Defects

Cranioplasty enables the restoration of cranial defects caused by traumatic injuries, brain tumour excisions, or decompressive craniectomies. Conventional methods rely on Computer-Aided Design (CAD) for implant design, which requires significant resources and expertise. Recent advancements in Artificial Intelligence (AI) have improved Computer-Aided Diagnostic systems for accurate and faster cranial reconstruction and implant generation procedures. However, these face inherent limitations, including the limited availability of diverse datasets covering different defect shapes spanning various locations, absence of a comprehensive pipeline integrating the preprocessing of medical images, cranial reconstruction, and implant generation, along with mechanical testing and validation. The proposed framework incorporates a robust preprocessing pipeline for easier processing of Computed Tomography (CT) images through data conversion, denoising, Connected Component Analysis (CCA), and image alignment. At its core is CRIGNet (Cranial Reconstruction and Implant Generation Network), a novel deep learning model rigorously trained on a diverse dataset of 2160 images, which was prepared by simulating cylindrical, cubical, spherical, and triangular prism-shaped defects across five skull regions, ensuring robustness in diagnosing a wide variety of defect patterns. CRIGNet achieved an exceptional reconstruction accuracy with a Dice Similarity Coefficient (DSC) of 0.99, Jaccard Similarity Coefficient (JSC) of 0.98, and Hausdorff distance (HD) of 4.63 mm. The generated implants showed superior geometric accuracy, load-bearing capacity, and gap-free fitment in the defected skull compared to CAD-generated implants. Also, this framework reduced the implant generation processing time from 40-45 min (CAD) to 25-30 s, suggesting its application for a faster turnaround time, enabling decisive clinical support systems.

Noise reduction in brain magnetic resonance imaging using adaptive wavelet thresholding based on linear prediction factor

Introduction

Wavelet thresholding techniques are crucial in mitigating noise in data communication and storage systems. In image processing, particularly in medical imaging like MRI, noise reduction is vital for improving visual quality and accurate analysis. While existing methods offer noise reduction, they often suffer from limitations like edge and texture loss, poor smoothness, and the need for manual parameter tuning.

Methods

This study introduces a novel adaptive wavelet thresholding technique for noise reduction in brain MRI. The proposed method utilizes a linear prediction factor to adjust the threshold adaptively. This factor leverages temporal information and features from both the original and noisy images to determine a weighted threshold. This dynamic thresholding approach aims to selectively reduce or eliminate noise coefficients while preserving essential image features.

Results

The proposed method was rigorously evaluated against existing state-of-the-art noise reduction techniques. Experimental results demonstrate significant improvements in key performance metrics, including mean squared error (MSE), peak signal-to-noise ratio (PSNR), and structural similarity index (SSIM).

Discussion

The proposed adaptive thresholding technique effectively addresses the limitations of existing methods by providing a more efficient and accurate noise reduction approach. By dynamically adjusting the threshold based on image-specific characteristics, this method effectively preserves image details while effectively suppressing noise. These findings highlight the potential of the proposed method for enhancing the quality and interpretability of brain MRI images.

Deep learning methods for 3D magnetic resonance image denoising, bias field and motion artifact correction: a comprehensive review

Magnetic resonance imaging (MRI) provides detailed structural information of the internal body organs and soft tissue regions of a patient in clinical diagnosis for disease detection, localization, and progress monitoring. MRI scanner hardware manufacturers incorporate various post-acquisition image-processing techniques into the scanner's computer software tools for different post-processing tasks. These tools provide a final image of adequate quality and essential features for accurate clinical reporting and predictive interpretation for better treatment planning. Different post-acquisition image-processing tasks for MRI quality enhancement include noise removal, motion artifact reduction, magnetic bias field correction, and eddy electric current effect removal. Recently, deep learning (DL) methods have shown great success in many research fields, including image and video applications. DL-based data-driven feature-learning approaches have great potential for MR image denoising and image-quality-degrading artifact correction. Recent studies have demonstrated significant improvements in image-analysis tasks using DL-based convolutional neural network techniques. The promising capabilities and performance of DL techniques in various problem-solving domains have motivated researchers to adapt DL methods to medical image analysis and quality enhancement tasks. This paper presents a comprehensive review of DL-based state-of-the-art MRI quality enhancement and artifact removal methods for regenerating high-quality images while preserving essential anatomical and physiological feature maps without destroying important image information. Existing research gaps and future directions have also been provided by highlighting potential research areas for future developments, along with their importance and advantages in medical imaging.

Enhancing clinical diagnostics: novel denoising methodology for brain MRI with adaptive masking and modified non-local block

Medical image denoising has been a subject of extensive research, with various techniques employed to enhance image quality and facilitate more accurate diagnostics. The evolution of denoising methods has highlighted impressive results but struggled to strike equilibrium between noise reduction and edge preservation which limits its applicability in various domains. This paper manifests the novel methodology that integrates an adaptive masking strategy, transformer-based U-Net Prior generator, edge enhancement module, and modified non-local block (MNLB) for denoising brain MRI clinical images. The adaptive masking strategy maintains the vital information through dynamic mask generation while the prior generator by capturing hierarchical features regenerates the high-quality prior MRI images. Finally, these images are fed to the edge enhancement module to boost structural information by maintaining crucial edge details, and the MNLB produces the denoised output by deriving non-local contextual information. The comprehensive experimental assessment is performed by employing two datasets namely the brain tumor MRI dataset and Alzheimer's dataset for diverse metrics and compared with conventional denoising approaches. The proposed denoising methodology achieves a PSNR of 40.965 and SSIM of 0.938 on the Alzheimer's dataset and also achieves a PSNR of 40.002 and SSIM of 0.926 on the brain tumor MRI dataset at a noise level of 50% revealing its supremacy in noise minimization. Furthermore, the impact of different masking ratios on denoising performance is analyzed which reveals that the proposed method showed PSNR of 40.965, SSIM of 0.938, MAE of 5.847, and MSE of 3.672 at the masking ratio of 60%. Moreover, the findings pave the way for the advancement of clinical image processing, facilitating precise detection of tumors in clinical MRI images.

Research related to the diagnosis of prostate cancer based on machine learning medical images: A review

BACKGROUND

Prostate cancer is currently the second most prevalent cancer among men. Accurate diagnosis of prostate cancer can provide effective treatment for patients and greatly reduce mortality. The current medical imaging tools for screening prostate cancer are mainly MRI, CT and ultrasound. In the past 20 years, these medical imaging methods have made great progress with machine learning, especially the rise of deep learning has led to a wider application of artificial intelligence in the use of image-assisted diagnosis of prostate cancer.

METHOD

This review collected medical image processing methods, prostate and prostate cancer on MR images, CT images, and ultrasound images through search engines such as web of science, PubMed, and Google Scholar, including image pre-processing methods, segmentation of prostate gland on medical images, registration between prostate gland on different modal images, detection of prostate cancer lesions on the prostate.

CONCLUSION

Through these collated papers, it is found that the current research on the diagnosis and staging of prostate cancer using machine learning and deep learning is in its infancy, and most of the existing studies are on the diagnosis of prostate cancer and classification of lesions, and the accuracy is low, with the best results having an accuracy of less than 0.95. There are fewer studies on staging. The research is mainly focused on MR images and much less on CT images, ultrasound images.

DISCUSSION

Machine learning and deep learning combined with medical imaging have a broad application prospect for the diagnosis and staging of prostate cancer, but the research in this area still has more room for development.

Self-supervised structural similarity-based convolutional neural network for cardiac diffusion tensor image denoising

BACKGROUND

Diffusion tensor imaging (DTI) is a promising technique for non-invasively investigating the myocardial fiber structures of human heart. However, low signal-to-noise ratio (SNR) has been a major limit of cardiac DTI to prevent us from detecting myocardium structure accurately. Therefore, it is important to remove the effect of noise on diffusion weighted (DW) images.

PURPOSE

Although the conventional and deep learning-based denoising methods have shown the potential to deal with effectively the noise in DW images, most of them are redundant information dependent or require the noise-free images as golden standard. In addition, the existed DW image denoising methods often suffer from problems of over-smoothing. To address these issues, we propose a self-supervised learning model, structural similarity based convolutional neural network with edge-weighted loss (SSECNN), to remove the noise effectively in cardiac DTI.

METHODS

Considering that the DW images acquired along different diffusion directions have structural similarity, and the noise in these DW images is independent and identically distributed, the structural similarity-based matching algorithm is proposed to search for the most similar DW images. Such similar noisy DW image pairs are then used as the input and target of the denoising network SSECNN, which consists of several convolutional and residual blocks. Through the self-supervised training with these image pairs, the network can restore the clean DW images and retain the correlations between the denoised DW images along different directions. To avoid the over-smoothing problem, we design a novel edge-weighted loss which enables the network to adaptively adjust the loss weights with iterations and therefore to improve the detail preserve ability of the model. To verify the superiority of the proposed method, comparisons with state-of-the-art (SOTA) denoising methods are performed on both synthetic and real acquired DTI datasets.

RESULTS

Experimental results show that SSECNN can effectively reduce the noise in the DW images while preserving detailed texture and edge information and therefore achieve better performance in DTI reconstruction. For synthetic dataset, compared to the SOTA method, the root mean square error (RMSE), peak signal-to-noise ratio (PSNR), and structure similarity index measure (SSIM) between the denoised DW images obtained with SSECNN and noise-free DW images are improved by 6.94%, 1.98%, and 0.76% respectively when the noise level is 10%. As for the acquired cardiac DTI dataset, the SSECNN method could significantly improve SNR and contrast to noise ratio (CNR) of cardiac DW images and achieve more regular helix angle (HA) and transverse angle (TA) maps. The ablation experimental results validate that using the structure similarity-based method to search the similar DW image pairs yield the smallest loss, and with the help of the edge-weighted loss, the denoised DW images and diffusion metric maps can preserve more details.

CONCLUSIONS

The proposed SSECNN method can fully explore the similarity between the DW images along different diffusion directions. Using such similarity and an edge-weighted loss enable us to denoise cardiac DTI effectively in a self-supervised manner. Our method can overcome the redundancy information dependence and over-smoothing problem of the SOTA methods.

Superconducting magnet designs and MRI accessibility: A review

Presently, magnetic resonance imaging (MRI) magnets must deliver excellent magnetic field (B₀ ) uniformity to achieve optimum image quality. Long magnets can satisfy the homogeneity requirements but require considerable superconducting material. These designs result in large, heavy, and costly systems that aggravate as field strength increases. Furthermore, the tight temperature tolerance of niobium titanium magnets adds instability to the system and requires operation at liquid helium temperature. These issues are crucial factors in the disparity of MR density and field strength use across the globe. Low-income settings show reduced access to MRI, especially to high field strengths. This article summarizes the proposed modifications to MRI superconducting magnet design and their impact on accessibility, including compact, reduced liquid helium, and specialty systems. Reducing the amount of superconductor inevitably entails shrinking the magnet size, resulting in higher field inhomogeneity. This work also reviews the state-of-the-art imaging and reconstruction methods to overcome this issue. Finally, we summarize the current and future challenges and opportunities in the design of accessible MRI.

Deep Learning for Image Enhancement and Correction in Magnetic Resonance Imaging-State-of-the-Art and Challenges

Magnetic resonance imaging (MRI) provides excellent soft-tissue contrast for clinical diagnoses and research which underpin many recent breakthroughs in medicine and biology. The post-processing of reconstructed MR images is often automated for incorporation into MRI scanners by the manufacturers and increasingly plays a critical role in the final image quality for clinical reporting and interpretation. For image enhancement and correction, the post-processing steps include noise reduction, image artefact correction, and image resolution improvements. With the recent success of deep learning in many research fields, there is great potential to apply deep learning for MR image enhancement, and recent publications have demonstrated promising results. Motivated by the rapidly growing literature in this area, in this review paper, we provide a comprehensive overview of deep learning-based methods for post-processing MR images to enhance image quality and correct image artefacts. We aim to provide researchers in MRI or other research fields, including computer vision and image processing, a literature survey of deep learning approaches for MR image enhancement. We discuss the current limitations of the application of artificial intelligence in MRI and highlight possible directions for future developments. In the era of deep learning, we highlight the importance of a critical appraisal of the explanatory information provided and the generalizability of deep learning algorithms in medical imaging.

Asymptomatic COVID-19 CT image denoising method based on wavelet transform combined with improved PSO

The quality of asymptomatic corona virus disease 2019 (COVID-19) computed tomography (CT) image is reduced due to interference from Gaussian noise, which affects the subsequent image processing. Aiming at the problem that asymptomatic COVID-19 CT image often have small flake ground-glass shadow in the early lesions, and the density is low, which is easily confused with noise. A denoising method of wavelet transform with shrinkage factor is proposed. The threshold decreases with the increase of decomposition scale, and it reduces the misjudgment of signal points. In the advanced stage, the range of lesions increases, with consolidation and fibrosis in different sizes, which have similar gray value to the CT images of suspected cases. Aiming at the problems of low contrast and fuzzy boundary in the traditional wavelet transform, the threshold function based on the optimization of parameters combined with the improved particle swam optimization (PSO) is proposed, so that the parameters of wavelet threshold function can change adaptively according to the lung lobe and ground-glass lesions with fewer iterations. The simulation results show that the paper method is significantly better than other algorithms in peak signal-to-noise ratio (PSNR), signal-to-noise ratio (SNR) and mean absolute error (MSE). For example, aiming at the early asymptomatic COVID-19, compared with the comparison methods, the PSNR under the proposed method has increased by about 5 dB, the MSE has been greatly reduced, and the SNR has increased by about 6.1 dB. It can be seen that the denoising effect under the proposed method is the best.

Estimation of missing air pollutant data using a spatiotemporal convolutional autoencoder

A key challenge in building machine learning models for time series prediction is the incompleteness of the datasets. Missing data can arise for a variety of reasons, including sensor failure and network outages, resulting in datasets that can be missing significant periods of measurements. Models built using these datasets can therefore be biased. Although various methods have been proposed to handle missing data in many application areas, more air quality missing data prediction requires additional investigation. This study proposes an autoencoder model with spatiotemporal considerations to estimate missing values in air quality data. The model consists of one-dimensional convolution layers, making it flexible to cover spatial and temporal behaviours of air contaminants. This model exploits data from nearby stations to enhance predictions at the target station with missing data. This method does not require additional external features, such as weather and climate data. The results show that the proposed method effectively imputes missing data for discontinuous and long-interval interrupted datasets. Compared to univariate imputation techniques (most frequent, median and mean imputations), our model achieves up to 65% RMSE improvement and 20–40% against multivariate imputation techniques (decision tree, extra-trees, k-nearest neighbours and Bayesian ridge regressors). Imputation performance degrades when neighbouring stations are negatively correlated or weakly correlated.