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Martins RS, Weber J, Poulikidis K, Shetawi AHA, Latif MJ, Razi SS, Lebovics RS, Bhora FY. Gene expression profiles in COVID-19-associated tracheal stenosis indicate persistent anti-viral response and dysregulated retinol metabolism. BMC Res Notes 2024; 17:140. [PMID: 38755665 PMCID: PMC11100031 DOI: 10.1186/s13104-024-06775-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 04/15/2024] [Indexed: 05/18/2024] Open
Abstract
INTRODUCTION Coronavirus disease 2019 (COVID-19)-associated tracheal stenosis (COATS) may occur as a result of prolonged intubation during COVID-19 infection. We aimed to investigate patterns of gene expression in the tracheal granulation tissue of patients with COATS, leverage gene expression data to identify dysregulated cellular pathways and processes, and discuss potential therapeutic options based on the identified gene expression profiles. METHODS Adult patients (age ≥ 18 years) presenting to clinics for management of severe, recalcitrant COATS were included in this study. RNA sequencing and differential gene expression analysis was performed with transcriptomic data for normal tracheal tissue being used as a control. The top ten most highly upregulated and downregulated genes were identified. For each of these pathologically dysregulated genes, we identified key cellular pathways and processes they are involved in using Gene Ontology (GO) and KEGG (Kyoto Encyclopedia of Genes and Genomes) applied via Database for Annotation, Visualization, and Integrated Discovery (DAVID). RESULTS Two women, aged 36 years and 37 years, were included. The profile of dysregulated genes indicated a cellular response consistent with viral infection (CXCL11, PI15, CCL8, DEFB103A, IFI6, ACOD1, and DEFB4A) and hyperproliferation/hypergranulation (MMP3, CASP14 and HAS1), while downregulated pathways included retinol metabolism (ALDH1A2, RBP1, RBP4, CRABP1 and CRABP2). CONCLUSION Gene expression changes consistent with persistent viral infection and dysregulated retinol metabolism may promote tracheal hypergranulation and hyperproliferation leading to COATS. Given the presence of existing literature highlighting retinoic acid's ability to favorably regulate these genes, improve cell-cell adhesion, and decrease overall disease severity in COVID-19, future studies must evaluate its utility for adjunctive management of COATS in animal models and clinical settings.
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Affiliation(s)
- Russell Seth Martins
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA.
- Division of Thoracic Surgery, Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network- Central Region, 65 James Street, 08820, Edison, NJ, USA.
| | - Joanna Weber
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA
| | - Kostantinos Poulikidis
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA
| | - Al Haitham Al Shetawi
- Division of Surgical Oncology, Department of Surgery, Dyson Center for Cancer Care, Vassar Brothers Medical Center, Nuvance Health, 12601, Poughkeepsie, NY, USA
- Division of Oral and Maxillofacial Surgery, Department of Surgery, Vassar Brothers Medical Center, Nuvance Health, 12601, Poughkeepsie, NY, USA
| | - M Jawad Latif
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA
| | - Syed Shahzad Razi
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA
| | - Robert S Lebovics
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA
| | - Faiz Y Bhora
- Department of Surgery, Hackensack Meridian School of Medicine, Hackensack Meridian Health (HMH) Network, 08820, Edison, NJ, USA.
- Chief of Thoracic Surgery, Hackensack Meridian Health (HMH) Network- Central Region, Hackensack Meridian School of Medicine, 65 James Street, 08820, Edison, NJ, USA.
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Kadry R, Newsome AS, Somanath PR. Pharmacological Inhibition of MMP3 as a Potential Therapeutic Option for COVID-19 Associated Acute Respiratory Distress Syndrome. Infect Disord Drug Targets 2021; 21:e170721187996. [PMID: 33200717 PMCID: PMC8551813 DOI: 10.2174/1871526520666201116100310] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 09/13/2020] [Accepted: 09/21/2020] [Indexed: 01/08/2023]
Abstract
The high mortality of coronavirus disease 2019 (COVID-19) patients is due to their progression to cytokine-associated organ injuries, primarily the acute respiratory distress syndrome (ARDS). The uncertainties in the molecular mechanisms leading to the switch from the early virus infection to the advanced stage ARDS is a major gridlock in therapeutic development to reduce mortality. Previous studies in our laboratory have identified matrix metalloprotease-3 (MMP3) as an important mediator of bacterial lipopolysaccharide (LPS)-induced ARDS, particularly in the exudative phase. Our studies have also reported elevated plasma MMP3 activity levels in the ARDS patients and that inhibition of MMP3 can reduce the severity of LPS-induced ARDS in mice. Given these observations, targeting MMP3 could be a potential option to treat COVID-19 patients with ARDS, and measurement of MMP3 activity in the plasma may serve as a biomarker for the early detection of ARDS in COVID-19 patients.
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Affiliation(s)
- Rana Kadry
- Clinical and Experimental Therapeutics, College of Pharmacy, University of Georgia and Charlie Norwood VA Medical Center, Augusta, GA30912, Georgia
| | - Andrea Sikora Newsome
- Clinical and Experimental Therapeutics, College of Pharmacy, University of Georgia and Charlie Norwood VA Medical Center, Augusta, GA30912, Georgia
| | - Payaningal R. Somanath
- Clinical and Experimental Therapeutics, College of Pharmacy, University of Georgia and Charlie Norwood VA Medical Center, Augusta, GA30912, Georgia
- Georgia Cancer Center, Vascular Biology Center and Department of Medicine, Augusta University, Augusta, GA30912, Georgia
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Eschert H, Sindermann JR, Scheld HH, Breithardt G, Weissen-Plenz G. Vascular remodeling in ApoE-deficient mice: diet dependent modulation after carotid ligation. Atherosclerosis 2008; 204:96-104. [PMID: 18848322 DOI: 10.1016/j.atherosclerosis.2008.08.025] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/11/2007] [Revised: 07/11/2008] [Accepted: 08/11/2008] [Indexed: 10/21/2022]
Abstract
Vascular remodeling is influenced by trauma and proatherogenic factors such as cholesterol. It has been shown that cholesterol exerts a direct effect on vessel wall structure. In this study we evaluated the effects of vascular trauma and cholesterol treatment on vascular remodeling and plaque integrity in carotid ligated ApoE-deficient mice. The right carotid artery was ligated in mice fed regular chow or cholesterol and fat containing diet. After 4 weeks left (non-ligated) and right (ligated) carotids were prepared. For studying vascular remodeling the vascular areas were evaluated morphometrically by calculating the areas from circumference measurements on Verhoff-van Gieson stains. The cellular and structural features of the plaque were analyzed by histological staining and immunohistochemistry. Under regular chow total vessel area decreased by 35% (p<0.001); cholesterol-rich diet led to an increase by 20% (p<0.05). In both feeding groups ligated carotids presented neointima development. The medial area increased only in mice fed regular chow. The luminal area was reduced by 80% (regular chow: p<0.001) and by 90% (cholesterol-rich diet: p<0.01). Regular chow led to structured plaques showing the typical features of stable plaques. Under cholesterol diet well defined plaque structures were missing. These lesions were characterized by numerous macrophages, few mostly PCNA positive smooth muscle cell (SMC) and less collagen particularly in the shoulder region. Our data indicate that in ApoE-deficient mice both direction of the remodeling response and lesion integrity are due to the diet applied: regular chow led to constrictive remodeling, whereas cholesterol and fat containing diet was associated with an adaptive response. Our data further indicate that the direction of response is not only related to the macrophage content but also to a proliferative intimal SMC-phenotype. Our data implicate that high serum cholesterol levels are not only inducers of plaque instability but also of the so far "positively recorded" compensatory remodeling.
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Affiliation(s)
- H Eschert
- Leibniz-Institute for Arteriosclerosis Research, Münster, Germany
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