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Carpenter MA, Shaw M, Cooper RD, Frew TJ, Butler RC, Murray SR, Moya L, Coyne CJ, Timmerman-Vaughan GM. Association mapping of starch chain length distribution and amylose content in pea (Pisum sativum L.) using carbohydrate metabolism candidate genes. BMC PLANT BIOLOGY 2017; 17:132. [PMID: 28764648 PMCID: PMC5540500 DOI: 10.1186/s12870-017-1080-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 07/21/2017] [Indexed: 05/24/2023]
Abstract
BACKGROUND Although starch consists of large macromolecules composed of glucose units linked by α-1,4-glycosidic linkages with α-1,6-glycosidic branchpoints, variation in starch structural and functional properties is found both within and between species. Interest in starch genetics is based on the importance of starch in food and industrial processes, with the potential of genetics to provide novel starches. The starch metabolic pathway is complex but has been characterized in diverse plant species, including pea. RESULTS To understand how allelic variation in the pea starch metabolic pathway affects starch structure and percent amylose, partial sequences of 25 candidate genes were characterized for polymorphisms using a panel of 92 diverse pea lines. Variation in the percent amylose composition of extracted seed starch and (amylopectin) chain length distribution, one measure of starch structure, were characterized for these lines. Association mapping was undertaken to identify polymorphisms associated with the variation in starch chain length distribution and percent amylose, using a mixed linear model that incorporated population structure and kinship. Associations were found for polymorphisms in seven candidate genes plus Mendel's r locus (which conditions the round versus wrinkled seed phenotype). The genes with associated polymorphisms are involved in the substrate supply, chain elongation and branching stages of the pea carbohydrate and starch metabolic pathways. CONCLUSIONS The association of polymorphisms in carbohydrate and starch metabolic genes with variation in amylopectin chain length distribution and percent amylose may help to guide manipulation of pea seed starch structural and functional properties through plant breeding.
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Affiliation(s)
- Margaret A Carpenter
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Martin Shaw
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Rebecca D Cooper
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Tonya J Frew
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Ruth C Butler
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Sarah R Murray
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Leire Moya
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand
| | - Clarice J Coyne
- USDA-ARS Western Regional Plant Introduction Station, 59 Johnson Hall, WSU Pullman, Pullman, Washington, WA 99164-6402, USA
| | - Gail M Timmerman-Vaughan
- The New Zealand Institute for Plant & Food Research Limited, PO Box 4704, Christchurch, New Zealand.
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Agama-Acevedo E, Nuñez-Santiago MC, Alvarez-Ramirez J, Bello-Pérez LA. Physicochemical, digestibility and structural characteristics of starch isolated from banana cultivars. Carbohydr Polym 2015; 124:17-24. [PMID: 25839789 DOI: 10.1016/j.carbpol.2015.02.003] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2014] [Revised: 01/30/2015] [Accepted: 02/02/2015] [Indexed: 11/30/2022]
Abstract
Banana starches from diverse varieties (Macho, Morado, Valery and Enano Gigante) were studied in their physicochemical, structural and digestibility features. X-ray diffraction indicated that the banana starches present a B-type crystallinity pattern, with slight difference in the crystallinity level. Macho and Enano Gigante starches showed the highest pasting temperatures (79 and 78°C, respectively), whilst Valery and Morado varieties presented a slight breakdown and higher setback than the formers. Morado starch presented the highest solubility value and Valery starch the lowest one. The swelling pattern of the banana starches was in agreement with their pasting profile. All banana starches showed a shear-thinning profile. The resistant starch (RS) fraction was the main fraction in the uncooked banana starches. Morado variety showed the highest amount of slowly digestible starch (SDS) and the lowest RS content reported until now in banana starches. Banana starch cooked samples presented an important amount of SDS and RS. Molecular weight and gyration radius of the four banana starches ranged between 2.88-3.14×10(8)g/mol and 286-302nm, respectively. The chain-length distributions of banana amylopectin showed that B1 chains (DP 13-24) is the main fraction, and an important amount of long chains (DP≥37) are present. The information generated from this study can be useful to determine banana varieties for starch isolation with specific functionality.
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Affiliation(s)
- Edith Agama-Acevedo
- Instituto Politécnico Nacional, CEPROBI, Km 8.5 Carr. Yautepec-Jojutla, colonia San Isidro, Yautepec, Morelos, Mexico.
| | - Maria C Nuñez-Santiago
- Instituto Politécnico Nacional, CEPROBI, Km 8.5 Carr. Yautepec-Jojutla, colonia San Isidro, Yautepec, Morelos, Mexico
| | - José Alvarez-Ramirez
- Universidad Autónoma Metropolitana-Iztapalapa, Departamento de Ingeniería de Procesos e Hidráulica, Apartado Postal 55-534, México, D.F. 09340, Mexico
| | - Luis A Bello-Pérez
- Instituto Politécnico Nacional, CEPROBI, Km 8.5 Carr. Yautepec-Jojutla, colonia San Isidro, Yautepec, Morelos, Mexico
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13
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Fitzgerald MA, Bergman CJ, Resurreccion AP, Möller J, Jimenez R, Reinke RF, Martin M, Blanco P, Molina F, Chen MH, Kuri V, Romero MV, Habibi F, Umemoto T, Jongdee S, Graterol E, Reddy KR, Bassinello PZ, Sivakami R, Rani NS, Das S, Wang YJ, Indrasari SD, Ramli A, Ahmad R, Dipti SS, Xie L, Lang NT, Singh P, Toro DC, Tavasoli F, Mestres C. Addressing the Dilemmas of Measuring Amylose in Rice. Cereal Chem 2009. [DOI: 10.1094/cchem-86-5-0492] [Citation(s) in RCA: 80] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Melissa A. Fitzgerald
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Grain Quality, Nutrition and Postharvest Centre, International Rice Research Institute, DAPO 7777, Metro Manila, Philippines. Corresponding author. Phone: 632 580 5600. Fax: 632 580 5699. E-mail:
| | - Christine J. Bergman
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Department of Food and Beverage, University of Nevada-Las Vegas, Las Vegas, NV 89154, United States
| | - Adoracion P. Resurreccion
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Grain Quality, Nutrition and Postharvest Centre, International Rice Research Institute, DAPO 7777, Metro Manila, Philippines. Corresponding author. Phone: 632 580 5600. Fax: 632 580 5699. E-mail:
| | - Jürgen Möller
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- FOSS Analytical AB, Höganäs, Sweden
| | - Rosario Jimenez
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Grain Quality, Nutrition and Postharvest Centre, International Rice Research Institute, DAPO 7777, Metro Manila, Philippines. Corresponding author. Phone: 632 580 5600. Fax: 632 580 5699. E-mail:
| | - Russell F. Reinke
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Yanco Agricultural Institute, NSW Department of Industry and Investment, PMB, Yanco, 2703, NSW, Australia
| | - Margrit Martin
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Yanco Agricultural Institute, NSW Department of Industry and Investment, PMB, Yanco, 2703, NSW, Australia
| | - Pedro Blanco
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Research Program, National Agricultural Research Institute, INIA Treinta y Tres, Ruta 8 km 281, Treinta y Tres, CP 33000, Uruguay
| | - Federico Molina
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Research Program, National Agricultural Research Institute, INIA Treinta y Tres, Ruta 8 km 281, Treinta y Tres, CP 33000, Uruguay
| | - Ming-Hsuan Chen
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- United States Department of Agriculture, Agricultural Research Service, Rice Research Unit, 1509 Aggie Drive, Beaumont, TX 77713, United States
| | - Victoria Kuri
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Laboratorio de Calidad FLAR-CIAT, CIAT, Km 17 via Cali-Palmira, Colombia
| | - Marissa V. Romero
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Chemistry and Food Science Division, Philippine Rice Research Institute, Maligaya, Science City of Muñoz, 3119 Nueva Ecija, Philippines
| | - Fatemeh Habibi
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Research Institute of Iran (RRII), 41996-13475 Rasht, I.R. Iran
| | - Takayuki Umemoto
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Quality Research Team, National Institute of Crop Science, Tsukuba, Ibaraki 305-8518, Japan
| | - Supanee Jongdee
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Ubonratchathani Rice Research Centre, Thailand
| | - Eduardo Graterol
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Fundación para la Investigación Agrícola DANAC. Apartado Postal 182, San Felipe, Estado Yaracuy, Venezuela
| | - K. Radhika Reddy
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Research & Development Centre, R & D Unit of Tilda Riceland Pvt. Ltd., 2633, II Main, V. V. Mohalla, Mysore – 570002 India
| | - Priscila Zaczuk Bassinello
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Embrapa Arroz e Feijão, Rodovia GO-462, Km 12, Zona Rural, C.P. 179 Santo Antônio de Goiás – GO, 75375-000, Brasil
| | - Rajeswari Sivakami
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Department of Rice, Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - N. Shobha Rani
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Crop Improvement Section, Directorate of Rice Research, Rajendra Nagar, Hyderabad 500030 AP, India
| | - Sanjukta Das
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Division of Biochemistry, Central Rice Research Institute, Cuttack-753006 (Orissa) India
| | - Ya Jane Wang
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Department of Food Science, University of Arkansas, Fayetteville, AR 72704
| | - Siti Dewi Indrasari
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Indonesian Center for Rice Research (ICRR) BB Padi, Jl. Raya 9, Sukamandi, Subang 41256 Jawa Barat Indonesia
| | - Asfaliza Ramli
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Pusat Penyelidikan Padi dan Tanaman Industri, MARDI Seberang Perai Beg Berkunci 203 Pejabat Pos Kepala Batas, 13200 Seberang Perai Pulau Penang, Malaysia
| | - Rauf Ahmad
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Programme, National Agricultural Research Centre, Islamabad, Pakistan
| | - Sharifa S. Dipti
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Grain Quality and Nutrition Division, Bangladesh Rice Research Institute (BRRI), Gazipur 1701, Bangladesh
| | - Lihong Xie
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- China National Rice Research Institute, Hangzhou, China
| | - Nguyen Thi Lang
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Genetic & Plant Breeding Division, Cuulong Delta Rice Research Inst., Viet Nam
| | - Pratibha Singh
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- College of Home Science, G.B.P.U.A & T University, Pantnagar 263145, U.S. nagar, Uttrakhand, India
| | - Dámaso Castillo Toro
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Programa Nadional de Arroz. Instituto de Investigaciones del Arroz. Depart. Tecnología Postcosecha. Km 16 1/2 Autopista del Mediodía. Apartado Postal. Bauta. La Habana. Cuba
| | - Fatemeh Tavasoli
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- Rice Research Institute of Iran (RRII), 41996-13475 Rasht, I.R. Iran
| | - Christian Mestres
- International Network for Quality Rice, IRRI, Los Banos, The Philippines
- CIRAD, Performances des Systèmes de Production et Transformation Tropicaux UMR Qualisud, TA B-95/16 73 avenue JF Breton, 34 398 Montpellier Cedex 5, France
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