Co-inoculation of halotolerant potassium solubilizing Bacillus licheniformis and Aspergillus violaceofuscus improves tomato growth and potassium uptake in different soil types under salinity

The role of endophytic salt-tolerant Franconibacter Sp. YSD YN2 in Cyperus esculentus L. Var sativus: impacts on plant growth and mechanisms of salt tolerance

BACKGROUND CYPERUS ESCULENTUS

L. var. sativus (chufa) is a perennial plant known for its nutrient-rich underground tubers and aboveground leaves, which offer significant food and health advantages worldwide. Despite its benefits, salt stress hinders plant growth, thus limiting both yield and quality. While the positive effects of plant growth-promoting endophytes (PGPEs) on plant growth have been established, their particular influence on chufa under salt stress has yet to be investigated. This research focused on examining the principal physiological and metabolic responses of chufa following inoculation with the PGPE Franconibacter sp. YSD YN2 at varying NaCl concentrations.

RESULTS

YSD YN2 exhibited significant salt resistance, robust colonization of plant compartments, and various characteristics (indole-3-acetic acid (IAA) (0.90-14.74 µg/mL), phosphate (P) (0.00-20.00 µg/mL), potassium (K) solubility (1.00-2.50), and exopolysaccharides (EPSs) (0.80-28.09 mg/mL)) under different NaCl concentrations, underscoring its capacity to enhance plant development and recuperation under salt stress. YSD YN2 inoculation significantly enhanced plant growth across different NaCl concentrations, including improvements in shoot height (13.33-26.67%), shoot weight (48.91-115.38%), root length (7.84-13.17%), root weight (39.43-63.06%), relative water content (1.78-10.80%), and the number of tillers (50.00-183.50%). Inoculation with YSD YN2 resulted in increased total chlorophyll contents (25.30-83.57%), improved efficiency of antioxidant enzymes such as peroxidase (POD) (13.81-35.48 fold), superoxide dismutase (SOD) (10.67-13.34%), and catalase (CAT) (25.00-78.95%), diminished malondialdehyde (MDA) accumulation (14.10-31.19%), and increased proline accumulation (11.37-19.64%) in chufa. Additionally, inoculation with YSD YN2 led to a reduction in internal Na+ accumulation and an increase in K+ and Ca2+ absorption.

CONCLUSION

YSD YN2 may serve as a valuable PGPE for improving plant development, photosynthetic pigmentation, oxidative processes, and osmotic control substances, controlling ion absorption, and reducing the harmful impacts of high-salinity chufa.

Serendipita indica-dominated synthetic microbial consortia enhanced tartary buckwheat growth and improved its tolerance to drought stress

The cultivation of tartary buckwheat serves dual roles, offering health benefits and nutritional advantages. Nonetheless, its cultivation is challenged by issues such as soil degradation and climatic drought. Plant growth-promoting (PGP) microorganisms hold promise for addressing these challenges. In this study, we investigated the effects of Serendipita indica inoculation on the root-associated microbial communities of tartary buckwheat. Additionally, we used S. indica to construct synthetic microbial consortia, and their role in promoting the growth and enhancing the drought resistance of tartary buckwheat was evaluated. This study found that the colonization of S. indica in tartary buckwheat promoted the enrichment of beneficial microorganisms such as Actinobacteriota, Sphingomonas, and Mortierella, while reducing the relative abundance of pathogenic genera including Cladosporium, Alternaria, and Acremonium. In addition, the inoculation of the microbial consortia significantly promoted the photosynthesis and biomass accumulation of tartary buckwheat, while also improving soil structure and fertility. Under drought conditions, introducing microbial groups markedly boosted root development, lowered the density of stomata and rate of transpiration in tartary buckwheat leaves, and decreased H2O2 and Malondialdehyde (MDA) levels, thus greatly enhancing tartary buckwheat's resistance to drought. In conclusion, our findings demonstrated that the microbial consortia constructed with S. indica can significantly promote the growth of tartary buckwheat and enhance its drought resistance. However, the specific molecular mechanisms underlying these effects require further investigation in future studies. These findings will provide important theoretical support for the development of novel microbial fertilizers.

Enhancing carrot (Daucus carota var. sativa Hoffm.) plant productivity with combined rhizosphere microbial consortium

Background

Plant growth-promoting rhizobacteria (PGPR) are an integral part of agricultural practices due to their roles in promoting plant growth, improving soil conditions, and suppressing diseases. However, researches on the PGPR in the rhizosphere of carrots, an important vegetable crop, is relative limited. Therefore, this study aimed to isolate and characterize PGPR strains from the rhizosphere soil of greenhouse-grown carrots, with a focus on their potential to stimulate carrot growth.

Methods

Through a screening process, 12 high-efficiency phosphorus-solubilizing bacteria, one nitrogen-fixing strain, and two potassium-solubilizing strains were screened. Prominent among these were Bacillus firmus MN3 for nitrogen fixation ability, Acinetobacter pittii MP41 for phosphate solubilization, and Bacillus subtilis PK9 for potassium-solubilization. These strains were used to formulate a combined microbial consortium, N3P41K9, for inoculation and further analysis.

Results

The application of N3P41K9, significantly enhanced carrot growth, with an increase in plant height by 17.1% and root length by 54.5% in a pot experiment, compared to the control group. This treatment also elevated alkaline-hydrolyzable nitrogen levels by 72.4%, available phosphorus by 48.2%, and available potassium by 23.7%. Subsequent field trials confirmed the efficacy of N3P41K9, with a notable 12.5% increase in carrot yields. The N3P41K9 treatment had a minimal disturbance on soil bacterial diversity and abundance, but significantly increased the prevalence of beneficial genera such as Gemmatimonas and Nitrospira. Genus-level redundancy analysis indicated that the pH and alkali-hydrolyzable nitrogen content were pivotal in shaping the bacterial community composition.

Discussion

The findings of this study highlight the feasibility of combined microbial consortium in promoting carrot growth, increasing yield, and enriching the root environment with beneficial microbes. Furthermore, these results suggest the potential of the N3P41K9 consortium for soil amelioration, offering a promising strategy for sustainable agricultural practices.

Unearthing the soil-bacteria nexus to enhance potassium bioavailability for global sustainable agriculture: A mechanistic preview

Established as a plant macronutrient, potassium (K) substantially bestows plant growth and thus, global food production. It is absorbed by plants as potassium cation (K+) from soil solution, which is enriched through slow-release from soil minerals or addition of soluble fertilizers. Contribution of bioavailable K+ from soil is usually insignificant (< 2 %), although the earth's crust is rich in K-bearing minerals. However, K is fixed largely in interlayer spaces of K-bearing minerals, which can be released by K-solubilizing bacteria (KSB) such as Bacillus, Pseudomonas, Enterobacter, and Acidithiobacillus. The underlying mechanisms of K dissolution by KSB include acidolysis, ion exchange reactions, chelation, complexolysis, and release of various organic and inorganic acids such as citric, oxalic, acetic, gluconic, and tartaric acids. These acids cause disintegration of K-bearing minerals and bring K+ into soil solution that becomes available to the plants. Current literature review updates the scientific information about microbial species, factors, and mechanisms governing the bio-intrusion of K-bearing minerals. Moreover, it explores the potential of KSB not only for K-solubilization but also to enhance bioavailability of phosphorus, nitrogen, and micronutrients, as well as its other beneficial impact on plant growth. Thus, in the context of sustainable agricultural production and global food security, utilization of KSB may facilitate plant nutrient availability, conserve natural resources, and reduce environmental impacts caused by chemical fertilizers.

Exploring the Organic Acid Secretion Pathway and Potassium Solubilization Ability of Pantoea vagans ZHS-1 for Enhanced Rice Growth

Soil potassium deficiency is a common issue limiting agricultural productivity. Potassium-solubilizing bacteria (KSB) show significant potential in mitigating soil potassium deficiency, improving soil quality, and enhancing plant growth. However, different KSB strains exhibit diverse solubilization mechanisms, environmental adaptability, and growth-promoting abilities. In this study, we isolated a multifunctional KSB strain ZHS-1, which also has phosphate-solubilizing and IAA-producing capabilities. 16S rDNA sequencing identified it as Pantoea vagans. Scanning electron microscopy (SEM) showed that strain ZHS-1 severely corroded the smooth, compact surface of potassium feldspar into a rough and loose state. The potassium solubilization reached 20.3 mg/L under conditions where maltose was the carbon source, sodium nitrate was the nitrogen source, and the pH was 7. Organic acid metabolism profiling revealed that strain ZHS-1 primarily utilized the EMP-TCA cycle, supplemented by pathways involving pantothenic acid, glyoxylic acid, and dicarboxylic acids, to produce large amounts of organic acids and energy. This solubilization was achieved through direct solubilization mechanisms. The strain also secreted IAA through a tryptophan-dependent metabolic pathway. When strain ZHS-1 was inoculated into the rhizosphere of rice, it demonstrated significant growth-promoting effects. The rice plants exhibited improved growth and root development, with increased accumulation of potassium and phosphorus. The levels of available phosphorus and potassium in the rhizosphere soil also increased significantly. Additionally, we observed a decrease in the relative abundance of Actinobacteria and Proteobacteria in the rice rhizosphere soil, while the relative abundance of genera associated with acid production and potassium solubilization, such as Gemmatimonadota, Acidobacteria, and Chloroflexi, as well as Cyanobacteria, which are beneficial to plant growth, increased. These findings contribute to a deeper understanding of the potassium solubilization mechanisms of strain ZHS-1 and highlight its potential as a plant growth-promoting rhizobacteria.

Enhancing sweet potato (Ipomoea batatas) resilience grown in cadmium-contaminated saline soil: a synergistic approach using Moringa leaf extract and effective microorganisms application

Raising soil contamination with cadmium (Cd2+) and salinization necessitates the development of green approaches using bio-elicitors to ensure sustainable crop production and mitigate the detrimental health impacts. Two field trials were carried out to study the individual and combined effects of foliage spraying of Moringa leaf extract (MLE) and soil application of effective microorganisms (EMs) on the physio-biochemical, osmolytes, antioxidants, and performance of sweet potato grown in Cd2+-contaminated salty soil (Cd2+  = 17.42 mg kg-1 soil and soil salinity ECe = 7.42 dS m-1). Application of MLE, EMs, or MLE plus EMs significantly reduced the accumulation of Cd2+ in roots by 55.6%, 50.0%, or 68.1% and in leaves by 31.4%, 27.6%, or 38.0%, respectively, compared to the control. Co-application of MLE and EMs reduced Na+ concentration while substantially raising N, P, K+, and Ca2+ acquisition in the leaves. MLE and EMs-treated plants exhibited higher concentrations of total soluble sugar by 69.6%, free proline by 47.7%, total free amino acids by 29.0%, and protein by 125.7% compared to the control. The enzymatic (SOD, APX, GR, and CAT) and non-enzymatic (phenolic acids, GSH, and AsA) antioxidants increased in plants treated with MLE and/or EMs application. Applying MLE and/or EMs increased the leaf photosynthetic pigment contents, membrane stability, relative water content, water productivity, growth traits, and tuber yield of Cd2+ and salt-stressed sweet potato. Consequently, the integrative application of MLE and EMs achieved the best results exceeding the single treatments recommended in future application to sweet potato in saline soil contaminated with Cd2+.

Characterization of potassium-solubilizing fungi, Mortierella spp., isolated from a poplar plantation rhizosphere soil

Potassium-solubilizing microorganisms are capable of secreting acidic chemicals that dissolve and release potassium from soil minerals, thus facilitating potassium uptake by plants. In this study, three potassium-dissolving filamentous fungi were isolated from the rhizosphere soil of a poplar plantation in Jiangsu Province, China. Phylogenetic analyses based on ITS, 18 S, and 28 S showed that these three isolates were most similar to Mortierella. These strains also possessed spherical or ellipsoidal spores, produced sporangia at the hyphal tip, and formed petal-like colonies on PDA media resembling those of Mortierella species. These findings, along with further phenotypic observations, suggest that these isolates were Mortierella species. In addition, the potassium-dissolution experiment showed that strain 2K4 had a relatively high potassium-solubilizing capacity among these isolated fungi. By investigating the influences of different nutrient conditions (carbon source, nitrogen source, and inorganic salt) and initial pH values on the potassium-dissolving ability, the optimal potassium-solubilization conditions of the isolate were determined. When potassium feldspar powder was used as an insoluble potassium source, isolate 2K4 exhibited a significantly better polysaccharide aggregation ability on the formed mycelium-potassium feldspar complex. The composition and content of organic acids secreted by strain 2K4 were further detected, and the potassium-dissolution mechanism of the Mortierella species and its growth promotion effect were discussed, using maize as an example.

Pantoea jilinensis D25 enhances tomato salt tolerance via altering antioxidant responses and soil microbial community structure

As a major challenge to global food security, soil salinity is an important abiotic stress factor that seriously affects the crop growth and yield. In this study, the mechanism of salt resistance of Pantoea jilinensis D25 and its improving effect on salt tolerance of tomato were explored with salt resistance-related genes identified in strain D25 by genomic sequencing. The results showed that in comparison with the treatment of NaCl, strain D25 significantly increased the fresh weight, shoot length, root length, and chlorophyll content of tomato under salt stress by 46.7%, 20%, 42.4%, and 44.2%, respectively, with increased absorptions of various macronutrients and micronutrients and decreased accumulation of Na+. The activities of defense enzymes (peroxidase, catalase, superoxide dismutase, phenylalanine ammonia-lyase, and polyphenol oxidase) were enhanced, while the content of malondialdehyde was decreased. The results of quantitative real-time PCR analysis showed that the expressions of genes (SlSOS1, SlNHX1, SlHKT1.1, SlSOD1, SlAPX2, SlAOS, SlPin II, Solyc08g066270.1, Solyc03g083420.2 and SlGA20ox1) related to ion transporters, antioxidant machinery, key defense, serine/threonine protein kinase synthesis, and gibberellin (GA) signal protein were up-regulated and were the highest in the treatment of both NaCl and strain D25. The activities of enzymes (dehydrogenase, urease, invertase, and catalase activities) related to soil fertility were enhanced. The results of 16S rRNA sequencing showed that soil microbial diversity and the abundance of probiotics (e.g., Acidibacter, Limnobacter, and Romboutsia) were significantly increased. Our study provided strong experimental evidence to support the agricultural application of strain D25 in the promotion of growth in crops.

Low apoplastic Na+ and intracellular ionic homeostasis confer salinity tolerance upon Ca2SiO4 chemigation in Zea mays L. under salt stress

Salinity is known to have a greater impact on shoot growth than root growth. Na+ buildup in plant tissue under salt stress has been proposed as one of the main issues that causes growth inhibition in crops via ionic imbalances, osmotic stress and pH disturbances. However, the evidence for apoplastic Na+ buildup and the role of silicon in Na+ accumulation at the subcellular level is still enigmatic. The current study focuses on the accumulation of Na+ in the apoplast and symplast of younger and older leaves of two maize varieties (Iqbal as salt-tolerant and Jalal as salt-sensitive) using hydroponic culture along with silicon supplementation under short-term salinity stress. Subcellular ion analysis indicated that silicon nutrition decreased Na+ concentration in both apoplastic washing fluid and symplastic fluid of maize under salt stress. The addition of silicon under NaCl treatment resulted in considerable improvement in fresh biomass, relative water content, chlorophyll content, and concentration of important subcellular ions (i.e., Ca2+, Mg2+, and K+). Knowledge of subcellular ion analysis is essential for solving the mechanisms underlying vital cellular functions e.g. in the current study, the soluble Na+ concentration in the apoplast of older leaves was found to be significantly greater (36.1 mM) in the salt-sensitive variety under NaCl treatment, which was 42.4% higher when compared to the Na+ concentration in the salt-tolerant variety under the same treatment which can influence permeability of cell membrane, signal transduction pathways and provides insights into how ion compartmentalization can contributes to salt tolerance. Calcium silicate enrichment can contribute to increased growth and improved ionic homeostasis by minimizing leaf electrolyte leakage, improving mechanical functions of cell wall and reducing water loss, and improved photosynthetic function. In current investigation, increased water content and intracellular ionic homeostasis along with reduced concentration of Na+ in the maize leaf apoplast suggest that calcium silicate can be used to ameliorate the adverse effects of salt stress and obtain yield using marginal saline lands.

B. subtilis CNBG-PGPR-1 induces methionine to regulate ethylene pathway and ROS scavenging for improving salt tolerance of tomato

Soil salinity severely threatens plant growth and crop yields. The utilization of PGPR is an effective strategy for enhancing plant salt tolerance, but the mechanisms involved in this process have rarely been reported. In this study, we investigated the effects of Bacillus subtilis CNBG-PGPR-1 on improving plant salt tolerance and elucidated the molecular pathways involved. The results showed that CNBG-PGPR-1 significantly improved the cellular homeostasis and photosynthetic efficiency of leaves and reduced ion toxicity and osmotic stress caused by salt in tomato. Transcriptome analysis uncovered that CNBG-PGPR-1 enhanced plant salt tolerance through the activation of complex molecular pathways, with plant hormone signal transduction playing an important role. Comparative analysis and pharmacological experiments confirmed that the ethylene pathway was closely related to the beneficial effect of CNBG-PGPR-1 on improving plant salt tolerance. Furthermore, we found that methionine, a precursor of ethylene synthesis, significantly accumulated in response to CNBG-PGPR-1 in tomato. Exogenous L-methionine largely mimicked the beneficial effects of CNBG-PGPR-1 and activated the expression of ethylene pathway-related genes, indicating CNBG-PGPR-1 induces methionine accumulation to regulate the ethylene pathway in tomato. Finally, CNBG-PGPR-1 reduced salt-induced ROS by activating ROS scavenger-encoding genes, mainly involved in GSH metabolism and POD-related genes, which were also closely linked to methionine metabolism. Overall, our studies demonstrate that CNBG-PGPR-1-induced methionine is a key regulator in enhancing plant salt tolerance through the ethylene pathway and ROS scavenging, providing a novel understanding of the mechanism by which beneficial microbes improve plant salt tolerance.

Improving saline-alkali soil and promoting wheat growth by co-applying potassium-solubilizing bacteria and cyanobacteria produced from brewery wastewater

Soil salinization is a serious ecological problem. Bacteria and cyanobacteria both have great potential for saline-alkali soil improvement. However, the effect of co-applying bacteria and cyanobacteria on soil improvement and crop growth promotion in saline-alkali soil remains unclear. In this study, the effects of Paenibacillus sabinae (potassium-solubilizing bacteria) and Leptolyngbya sp. RBD05 (cyanobacteria), produced in brewery wastewater, on soil properties, wheat growth, and wheat stress tolerance were studied by applying them to saline-alkali soil alone or in combination. The study indicated that P. sabinae and Leptolyngbya sp. RBD05 have important roles in increasing wheat growth, N:P ratio, K:Na ratio, proline content, and superoxide dismutase activity, as well as in slowing the decline of soil nutrient content caused by wheat absorption. Compared to the control group, the co-application had the best effect on soil available K content, wheat dry weight, and wheat root length (increased by 26%, 85%, and 70%, respectively); and it was more conducive to promoting the wheat K:Na ratio (increased by 41%), which would better improve the wheat’s saline-alkali stress tolerance. This study provided a new and clean strategy to improve saline-alkali soil quality and promote crop growth by the bacteria and cyanobacteria produced from wastewater treatment.

Drought tolerance of Aspergillus violaceofuscus and Bacillus licheniformis and their influence on tomato growth and potassium uptake in mica amended tropical soils under water-limiting conditions

Drought is a significant abiotic stress that alters plant physiology and ultimately affects crop productivity. Among essential plant nutrients, potassium (K) is known to mitigate the deleterious effect of drought on plant growth. If so, K addition or inoculation of potassium solubilizing microorganisms (KSMs) that are tolerant to drought should promote plant growth during water stress. Therefore, in this study, K solubilizing Aspergillus violaceofuscus and Bacillus licheniformis, isolated from saxicolous environments, were tested for their capacity to tolerate drought using different molecular weights (~4000, 6000, and 8000 Da), and concentrations (0, 250, 500, 750, 1000, and 1250 mg/L) of polyethylene glycol (PEG) under in vitro conditions. The results showed that high concentrations (750 and 1000 mg/L) of PEG with different molecular weight considerably improved bacterial cell numbers/fungal biomass and catalase (CAT) and proline activities. Moreover, the ability of KSMs alone or in combination to impart drought tolerance and promote plant growth in the presence and absence of mica (9.3% K₂O) supplementation was tested in Alfisol and Vertisol soil types under greenhouse conditions. The results revealed that the tomato plants inoculated with KSMs individually or dually with/without mica improved the physiological and morphological traits of the tomato plants under drought. Generally, tomato plants co-inoculated with KSMs and supplemented with mica were taller (2.62 and 3.38-fold) and had more leaf area (2.03 and 1.98-fold), total root length (3.26 and 8.86-fold), shoot biomass (3.87 and 3.93-fold), root biomass (9.00 and 7.24-fold), shoot K content (3.08 and 3.62-fold), root K content (3.39 and 2.03-fold), relative water content (1.51 and 1.27-fold), CAT activity (2.11 and 2.14-fold), proline content (3.41 and 3.28-fold), and total chlorophyll content (1.81 and 1.90-fold), in unsterilized Alfisol and Vertisol soil types, respectively, than uninoculated ones. Dual inoculation of the KSMs along with mica amendment, also improved the endorrhizal symbiosis of tomato plants more than their individual inoculation or application in both soil types. These findings imply that the A. violaceofuscus and B. licheniformis isolates are promising as novel bioinoculants for improving crop growth in water-stressed and rainfed areas of the tropics in the future.

Harnessing Native Bacillus spp. for Sustainable Wheat Production

The genus Bacillus has been widely applied in contemporary agriculture as an environmentally-friendly biological agent. However, the real effect of commercial Bacillus-based fertilizers and pesticides varies immensely in the field. To harness Bacillus for efficient wheat production, we reviewed the diversity, functionality, and applicability of wheat-associated native Bacillus for the first time. Our main findings are: (i) Bacillus spp. inhabit the rhizosphere, root, stem, leaf, and kernel of wheat; (ii) B. subtilis and B. velezensis are the most widely endophytic species that can be isolated from both below and aboveground tissues; (iii) major functions of these representative strains are promotion of plant growth and alleviation of both abiotic and biotic stresses in wheat; (iv) stability and effectiveness are 2 major challenges during field application; (v) a STVAE pipeline that includes 5 processes, namely, Screen, Test, Validation, Application, and Evaluation, has been proposed for the capture and refinement of wheat-associated Bacillus spp. In particular, this review comprehensively addresses possible solutions, concerns, and criteria during the development of native Bacillus-based inoculants for sustainable wheat production.

New application of Aspergillus versicolor in promoting plant growth after suppressing sterigmatocystin production via genome mining and engineering

Aspergillus genus is a key component in fermentation and food processing. However, sterigmatocystin (STE)-a mycotoxin produced by several species of Aspergillus-limits the use of some Aspergillus species (such as Aspergillus versicolor, Aspergillus inflatus, and Aspergillus parasiticus) because of its toxicity and carcinogenicity. Here, we engineered an STE-free Aspergillus versicolor strain based on genome mining techniques. We sequenced and assembled the Aspergillus versicolor D5 genome (34.52 Mb), in which we identified 16 scaffolds and 54 biosynthetic gene clusters (BGCs). We silenced cytochrome P450 coding genes STC17 and STC27 by insertional inactivation. The production of STE in the Δstc17 mutant strain was increased by 282% but no STE was detected in the Δstc27 mutant. Metabolites of Δstc27 mutant exhibited growth-promoting effect on plants. Our study makes significant progress in improving the application of some Aspergillus strains by restricting their production of toxic and carcinogenic compounds.