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Zhang Y, Zou W, Zhou Y, Chen J, Hu Y, Wu F. Pamoic acid and carbenoxolone specifically inhibit CRISPR/Cas9 in bacteria, mammalian cells, and mice in a DNA topology-specific manner. Genome Biol 2025; 26:75. [PMID: 40156040 PMCID: PMC11951523 DOI: 10.1186/s13059-025-03521-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Accepted: 02/28/2025] [Indexed: 04/01/2025] Open
Abstract
BACKGROUND Regulation of the target DNA cleavage activity of CRISPR/Cas has naturally evolved in a few bacteria or bacteriophages but is lacking in higher species. Thus, identification of bioactive agents and mechanisms that can suppress the activity of Cas9 is urgently needed to rebalance this new genetic pressure. RESULTS Here, we identify four specific inhibitors of Cas9 by screening 4607 compounds that could inhibit the endonuclease activity of Cas9 via three distinct mechanisms: substrate-competitive and protospacer adjacent motif (PAM)-binding site-occupation; substrate-targeting; and sgRNA-targeting mechanisms. These inhibitors inhibit, in a dose-dependent manner, the activity of Streptococcus pyogenes Cas9 (SpyCas9), Staphylococcus aureus Cas9 (SauCas9), and SpyCas9 nickase-based BE4 base editors in in vitro purified enzyme assays, bacteria, mammalian cells, and mice. Importantly, pamoic acid and carbenoxolone show DNA-topology selectivity and preferentially inhibit the cleavage of linear DNA compared with a supercoiled plasmid. CONCLUSIONS These pharmacologically selective inhibitors and new mechanisms offer new tools for controlling the DNA-topology selective activity of Cas9.
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Affiliation(s)
- Yuxuan Zhang
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Wentao Zou
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yueyang Zhou
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jiaqi Chen
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Youtian Hu
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Fang Wu
- Key Laboratory of Systems Biomedicine (Ministry of Education), Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, 200240, China.
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Costa FMS, Granja A, Pérez RL, Warner IM, Reis S, Passos MLC, Saraiva MLMFS. Fluoroquinolone-Based Organic Salts (GUMBOS) with Antibacterial Potential. Int J Mol Sci 2023; 24:15714. [PMID: 37958698 PMCID: PMC10650486 DOI: 10.3390/ijms242115714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 10/25/2023] [Accepted: 10/25/2023] [Indexed: 11/15/2023] Open
Abstract
Antimicrobial resistance is a silent pandemic considered a public health concern worldwide. Strategic therapies are needed to replace antibacterials that are now ineffective. One approach entails the use of well-known antibacterials along with adjuvants that possess non-antibiotic properties but can extend the lifespan and enhance the effectiveness of the treatment, while also improving the suppression of resistance. In this regard, a group of uniform materials based on organic salts (GUMBOS) presents an alternative to this problem allowing the combination of antibacterials with adjuvants. Fluoroquinolones are a family of antibacterials used to treat respiratory and urinary tract infections with broad-spectrum activity. Ciprofloxacin and moxifloxacin-based GUMBOS were synthesized via anion exchange reactions with lithium and sodium salts. Structural characterization, thermal stability and octanol/water partition ratios were evaluated. The antibacterial profiles of most GUMBOS were comparable to their cationic counterparts when tested against Gram-positive S. aureus and Gram-negative E. coli, except for deoxycholate anion, which demonstrated the least effective antibacterial activity. Additionally, some GUMBOS were less cytotoxic to L929 fibroblast cells and non-hemolytic to red blood cells. Therefore, these agents exhibit promise as an alternative approach to combining drugs for treating infections caused by resistant bacteria.
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Affiliation(s)
- Fábio M. S. Costa
- LAQV, REQUIMTE, Laboratory of Applied Pharmacy, Department of Chemical Sciences, Faculty of Pharmacy, Porto University, Rua de Jorge Viterbo Ferreira, 4050-313 Porto, Portugal; (F.M.S.C.); (A.G.); (S.R.)
| | - Andreia Granja
- LAQV, REQUIMTE, Laboratory of Applied Pharmacy, Department of Chemical Sciences, Faculty of Pharmacy, Porto University, Rua de Jorge Viterbo Ferreira, 4050-313 Porto, Portugal; (F.M.S.C.); (A.G.); (S.R.)
| | - Rocío L. Pérez
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA; (R.L.P.); (I.M.W.)
- Department of Chemistry and Biochemistry, Georgia Southern University, Statesboro, GA 30458, USA
| | - Isiah M. Warner
- Department of Chemistry, Louisiana State University, Baton Rouge, LA 70803, USA; (R.L.P.); (I.M.W.)
- Department of Chemistry, Cincinnati University, Cincinnati, OH 45221, USA
| | - Salette Reis
- LAQV, REQUIMTE, Laboratory of Applied Pharmacy, Department of Chemical Sciences, Faculty of Pharmacy, Porto University, Rua de Jorge Viterbo Ferreira, 4050-313 Porto, Portugal; (F.M.S.C.); (A.G.); (S.R.)
| | - Marieta L. C. Passos
- LAQV, REQUIMTE, Laboratory of Applied Pharmacy, Department of Chemical Sciences, Faculty of Pharmacy, Porto University, Rua de Jorge Viterbo Ferreira, 4050-313 Porto, Portugal; (F.M.S.C.); (A.G.); (S.R.)
| | - M. Lúcia M. F. S. Saraiva
- LAQV, REQUIMTE, Laboratory of Applied Pharmacy, Department of Chemical Sciences, Faculty of Pharmacy, Porto University, Rua de Jorge Viterbo Ferreira, 4050-313 Porto, Portugal; (F.M.S.C.); (A.G.); (S.R.)
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Khan A, Ibrar I, Mirdad A, Al-Juboori RA, Deka P, Subbiah S, Altaee A. Novel Approach to Landfill Wastewater Treatment Fouling Mitigation: Air Gap Membrane Distillation with Tin Sulfide-Coated PTFE Membrane. MEMBRANES 2023; 13:membranes13050483. [PMID: 37233544 DOI: 10.3390/membranes13050483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 04/28/2023] [Accepted: 04/28/2023] [Indexed: 05/27/2023]
Abstract
This study addressed the fouling issue in membrane distillation (M.D.) technology, a promising method for water purification and wastewater reclamation. To enhance the anti-fouling properties of the M.D. membrane, a tin sulfide (TS) coating onto polytetrafluoroethylene (PTFE) was proposed and evaluated with air gap membrane distillation (AGMD) using landfill leachate wastewater at high recovery rates (80% and 90%). The presence of TS on the membrane surface was confirmed using various techniques, such as Field Emission Scanning Electron Microscopy (FE-SEM), Fourier Transform Infrared Spectroscopy (FT-IR), Energy Dispersive Spectroscopy (EDS), contact angle measurement, and porosity analysis. The results indicated the TS-PTFE membrane exhibited better anti-fouling properties than the pristine PTFE membrane, and its fouling factors (FFs) were 10.4-13.1% compared to 14.4-16.5% for the PTFE membrane. The fouling was attributed to pore blockage and cake formation of carbonous and nitrogenous compounds. The study also found that physical cleaning with deionized (DI) water effectively restored the water flux, with more than 97% recovered for the TS-PTFE membrane. Additionally, the TS-PTFE membrane showed better water flux and product quality at 55 °C and excellent stability in maintaining the contact angle over time compared to the PTFE membrane.
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Affiliation(s)
- Abdulaziz Khan
- Mechanical and Mechatronic Engineering (MME), University of Technology Sydney, 15 Broadway, Sydney, NSW 2007, Australia
- Mechanical Department at Taif Technical College, Technical and Vocational Training Corporation (TVTC), Riyadh 11564, Saudi Arabia
| | - Ibrar Ibrar
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, Sydney, NSW 2007, Australia
| | - Abeer Mirdad
- Faculty of Engineering and Information Technology, University of Technology Sydney, 5 Broadway, Sydney, NSW 2007, Australia
| | - Raed A Al-Juboori
- NYUAD Water Research Centre, New York University-Abu Dhabi Campus, Abu Dhabi P.O. Box 129188, United Arab Emirates
| | - Priyamjeet Deka
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Senthilmurugan Subbiah
- Department of Chemical Engineering, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Ali Altaee
- Centre for Green Technology, School of Civil and Environmental Engineering, University of Technology Sydney, 15 Broadway, Sydney, NSW 2007, Australia
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Khan K, Irfan M, Amin NU, Jiang H, Gul S. Synthesis and characterization of porous reduced graphene oxide based geopolymeric membrane with titanium dioxide coating for forward osmosis application. CHEMOSPHERE 2023; 313:137480. [PMID: 36513197 DOI: 10.1016/j.chemosphere.2022.137480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 11/15/2022] [Accepted: 12/03/2022] [Indexed: 06/17/2023]
Abstract
Forward Osmosis (FO) is a promising separation technology with a wide range of applications in water and wastewater treatment. FO membrane is the core of the forward osmosis process. Recently, the organic membrane has been widely used for forward osmosis applications even though inorganic membrane has excellent mechanical properties, decent chemical resistance, high durability, high porosity, and good hydrophilicity. Nevertheless, the utilization of inorganic membrane is hindered by the heat-intensive steps involved in its fabrication and the use of expensive source material. Geopolymerization provides a cost-effective technique for the preparation of inorganic membranes because of its sintering-free steps and utilization of fly ash as source material. Herein, we present a sintering-free, environmentally friendly, and cost-effective synthesis of geopolymeric membrane for application in forward osmosis. Fly ash was mixed with alkaline activator solution and porous reduced graphene oxide (PRGO) to prepare geopolymer slurry. The hydrogen peroxide and egg albumen were used as foaming agent and surfactant, while the membrane surface was coated with titanium dioxide to enhance the hydrophilicity of the membrane surface. The PRGO content improved the mechanical properties of the geopolymeric membrane. The average maximum flux recorded was 21 L/m2 h with geopolymer substrate having a pore size of 1.8 μm and hydrophilic coated layer pore size of 0.25 μm. The varying concentrations of PRGO control the substrate's mechanical properties and pore size, as well as provide new insights for future studies. These preliminary results show that low-cost geopolymer material is a promising candidate for FO membrane fabrication.
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Affiliation(s)
- Kashif Khan
- Department of Chemical Engineering, University of Engineering & Technology Peshawar, Peshawar, Pakistan
| | - Muhammad Irfan
- Department of Chemical and Energy Engineering, Pak-Austria Fachhochschule: Institute of Applied Sciences and Technology, Mang, Haripur, Pakistan
| | - Noor Ul Amin
- Department of Chemistry, Abdul Wali Khan University, Mardan, 23200, Pakistan
| | - Heqing Jiang
- Qingdao Key Laboratory of Functional Membrane Material and Membrane Technology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China
| | - Saeed Gul
- Department of Chemical Engineering, University of Engineering & Technology Peshawar, Peshawar, Pakistan.
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