Minimizing the impact of Joule heating as a prerequisite for the reliable analysis of metal‐protein complexes by capillary electrophoresis

Online integration of capillary electrophoresis and dual detector Taylor dispersion analysis via a 3D printed instrument

Hydrodynamic radius (RH) is a descriptive metric of protein structure with the potential to impact drug development, disease diagnosis, and other important research areas of molecular biology. Common instrumental methods for molecular size characterization are disadvantageous due to high sample consumption, measurements made in non-physiological conditions, and/or inaccurate size determinations. Capillary Taylor dispersion analysis (TDA) is a molecular sizing method that utilizes nL sample volumes and achieves absolute size determination without calibration or comparison to standards. One key drawback of TDA is that it reports the concentration-weighted average RH, which may be limiting in the analysis of complex sample mixtures. Here, we describe the development of a 3D printed instrument to integrate capillary electrophoresis (CE) separations online with TDA size characterization. Dual laser-induced fluorescence detectors were developed to enable two-channel detection using a single PMT and fluorescence filter set, achieving detection limits for AlexaFluor 532 of 0.6 ± 0.4 nM and 1.1 ± 0.2 nM for detectors 1 and 2, respectively. Joule heating during CE separations was observed to introduce bias in subsequent TDA measurements. The effects of Joule heating were mitigated by integrating a water circulating sheath flow on the portion of the capillary used for CE. The utility of CE-TDA in bioanalysis was demonstrated by standard-free peak identification in the ficin digestion of IgG1. CE-TDA was further applied to characterizing denaturation dynamics of the Group II heat resistant protein apolipoprotein A-1 (ApoA), in which RH was observed to increase from 2.3 ± 0.2 nm at 20 °C to 5.2 ± 0.5 nm while heated at at 90 °C, then returned to a quasi-native state with RH = 2.9 ± 0.5 nm after cooling to 20 °C. CE-TDA is a powerful analysis mode with potential to impact various domains of bioanalysis. The instrument developed in this work offers a low barrier to entry for researchers interested in adopting CE-TDA.

Capillary electrophoresis separations with Betaine:Urea, a deep eutectic solvent as the separation medium

BACKGROUND

Capillary electrophoresis (CE) is a highly versatile separation technique widely used in analytical chemistry. Traditionally, CE can be categorized as either aqueous or non-aqueous systems based on the buffer solvents employed. For decades, non-aqueous CE has been predominantly associated with the use of organic solvents, a perception deeply ingrained in the scientific community. However, growing concerns about the health and environmental impacts of these solvents, driven by the principles of green chemistry, have prompted a reevaluation of their use. In response to these concerns, our group recently introduced a deep eutectic solvent (DES), specifically Proline:Urea, as an innovative and eco-friendly separation medium for CE. This approach not only enhances the sustainability of CE separations but also offers a new perspective for the development of innovative CE separation media.

RESULTS

Building on our previous work, here we report the use of the second DES, Betaine:Urea (BU), as a new separation medium that offers further improved performance for CE applications. The DES was systematically characterized, with key physical properties relevant to CE separations, such as thermal properties, viscosity, dielectric constant, Joule heating effect, and UV transmittance, being thoroughly examined. Using a complex sample of 10 structurally similar naphthalene derivatives, we demonstrated the efficiency of BU in capillary zone electrophoresis (CZE) for separating analytes with varying charges (including cations, neutrals, and anions) and sizes. Additionally, we established the first micellar electrokinetic chromatography (MEKC) system in this DES using sodium dodecyl sulfate (SDS) as the surfactant. This system successfully resolved 6 structurally similar neutrals that could not be separated by conventional aqueous SDS-MEKC, highlighting the versatility of this DES-type separation medium. Furthermore, BU showed several advantages over the previously reported DES, Proline:Urea, particularly in terms of stability, viscosity, and Joule heating effects.

SIGNIFICANCE

This study holds the potential to challenge the traditional notion that "CE separation media are merely categorized into aqueous and organic solvents". Given that DESs are "designer" solvents with highly tunable properties and environmentally friendly characteristics, the introduction of BU as a viable alternative to traditional solvents not only expands the media available for CE separations, but also offers a more efficient and potentially more sustainable option for specific analyses.

Capillary electrophoresis separations with deep eutectic solvents as greener separation media: A proof-of-concept study

Capillary electrophoresis (CE) has conventionally been classified into aqueous and non-aqueous categories based on the types of buffer solvents employed. Traditionally, non-aqueous CE has always been associated with the use of organic solvents, which are considered hazardous to health and environmentally detrimental. In this work, we introduce deep eutectic solvents (DESs) as CE separation media for the first time, presenting a novel and environmentally friendly approach to CE separations. The DES employed consists of proline and urea (Proline:Urea, PU), both of which are naturally occurring compounds that are readily available, cost-effective, and environmentally benign. Various fundamental aspects of the DES-type CE media were investigated, including thermal property, viscosity, electroconductivity, Joule heating effect, and compatibility with detectors. A simulated complex mixture of ten naphthalene-based compounds with varied charges and sizes was separated using the DES-based medium in capillary zone electrophoresis (CZE) mode. Moreover, we also established a DES-based micellar electrokinetic chromatography (MEKC) system utilizing Tween-20 as the surfactant. Six structurally similar naphthalene derivatives (isomers) that couldn't be resolved by CZE were effectively separated due to their strong hydrophobic interaction with Tween-20 micelles within the DES medium. Given that DESs are "designer" solvents with highly tunable properties and environmentally friendly characteristics, this study demonstrates the potential of employing DESs as an alternative to organic solvents for greener CE separations.

Field-Flow Fractionation in Molecular Biology and Biotechnology

Field-flow fractionation (FFF) is a family of single-phase separative techniques exploited to gently separate and characterize nano- and microsystems in suspension. These techniques cover an extremely wide dynamic range and are able to separate analytes in an interval between a few nm to 100 µm size-wise (over 15 orders of magnitude mass-wise). They are flexible in terms of mobile phase and can separate the analytes in native conditions, preserving their original structures/properties as much as possible. Molecular biology is the branch of biology that studies the molecular basis of biological activity, while biotechnology deals with the technological applications of biology. The areas where biotechnologies are required include industrial, agri-food, environmental, and pharmaceutical. Many species of biological interest belong to the operational range of FFF techniques, and their application to the analysis of such samples has steadily grown in the last 30 years. This work aims to summarize the main features, milestones, and results provided by the application of FFF in the field of molecular biology and biotechnology, with a focus on the years from 2000 to 2022. After a theoretical background overview of FFF and its methodologies, the results are reported based on the nature of the samples analyzed.

FFF-based high-throughput sequence shortlisting to support the development of aptamer-based analytical strategies

Aptamers are biomimetic receptors that are increasingly exploited for the development of optical and electrochemical aptasensors. They are selected in vitro by the SELEX (Systematic Evolution of Ligands by Exponential Enrichment) procedure, but although they are promising recognition elements, for their reliable applicability for analytical purposes, one cannot ignore sample components that cause matrix effects. This particularly applies when different SELEX-selected aptamers and related truncated sequences are available for a certain target, and the choice of the aptamer should be driven by the specific downstream application. In this context, the present work aimed at investigating the potentialities of asymmetrical flow field-flow fractionation (AF4) with UV detection for the development of a screening method of a large number of anti-lysozyme aptamers towards lysozyme, including randomized sequences and an interfering agent (serum albumin). The possibility to work in native conditions and selectively monitor the evolution of untagged aptamer signal as a result of aptamer-protein binding makes the devised method effective as a strategy for shortlisting the most promising aptamers both in terms of affinity and in terms of selectivity, to support subsequent development of aptamer-based analytical devices.

Heat dissipation in slab gel electrophoresis: The effect of embedded TiO2 nanoparticles on the thermal profiles

Despite the fast development of novel and high-resolution electrophoresis techniques such as capillary-based methods and microfluidic devices, the slab gel electrophoresis is still a popular method for the separation of biomolecules in medicine and biology. It is a low cost and simple method and offers high throughput. However, this technique is limited to low voltages leading to slow separations. Producing the heat during the electrophoresis known as Joule heating inevitably leads to a rise in the gel temperature. For the first time, this work offers a whole gel temperature measurement by using a thermal camera which presents accurate temperature profiles in the gel with a resolution of more than 10 pixel/mm² and a precision of 0.1 °C. Titania, TiO₂, nanoparticles (NPs) were embedded into the polyacrylamide (PA) gel to improve the electrophoretic separation of proteins. By embedding 0.025% w/v TiO₂ NPs, heat dissipation increases by 16.5% at applied voltage of 200 V compared with that of PA gel with no embedded TiO₂ NPs. The thermal images showed that the composite gel was 2.5 °C in average cooler than PA gel after 15 min of electrophoresis run at 200 V. The maximum separation voltage increased by 30 V in the composite PA/TiO₂ gel compared with the pure PA gel. Moreover, the average number of theoretical plates over the 10 protein peaks, as a criterion of separation performance, increased by about 63% at 180 V when TiO₂ NPs were included into the gel.