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Liang Y, Zhang L, Zhang Y. Chromatographic separation of peptides and proteins for characterization of proteomes. Chem Commun (Camb) 2023; 59:270-281. [PMID: 36504223 DOI: 10.1039/d2cc05568f] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
Characterization of proteomes aims to comprehensively characterize proteins in cells or tissues via two main strategies: (1) bottom-up strategy based on the separation and identification of enzymatic peptides; (2) top-down strategy based on the separation and identification of intact proteins. However, it is challenged by the high complexity of proteomes. Consequently, the improvements in peptide and protein separation technologies for simplifying the sample should be critical. In this feature article, separation columns for peptide and protein separation were introduced, and peptide separation technologies for bottom-up proteomic analysis as well as protein separation technologies for top-down proteomic analysis were summarized. The achievement, recent development, limitation and future trends are discussed. Besides, the outlook on challenges and future directions of chromatographic separation in the field of proteomics was also presented.
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Affiliation(s)
- Yu Liang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Lihua Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
| | - Yukui Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, 116023, China.
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Xiao J, Lu Q, Cong H, Shen Y, Yu B. Microporous poly(glycidyl methacrylate- co-ethylene glycol dimethyl acrylate) microspheres: synthesis, functionalization and applications. Polym Chem 2021. [DOI: 10.1039/d1py00834j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
As a new kind of functional material, micron-sized porous polymer microspheres are a hot research topic in the field of polymer materials.
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Affiliation(s)
- Jingyuan Xiao
- Institute of Biomedical Materials and Engineering, College of Chemistry and Chemical Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Qingbiao Lu
- Institute of Biomedical Materials and Engineering, College of Chemistry and Chemical Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Hailin Cong
- Institute of Biomedical Materials and Engineering, College of Chemistry and Chemical Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China
- State Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, Qingdao 266071, China
| | - Youqing Shen
- Institute of Biomedical Materials and Engineering, College of Chemistry and Chemical Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China
| | - Bing Yu
- Institute of Biomedical Materials and Engineering, College of Chemistry and Chemical Engineering, College of Materials Science and Engineering, Qingdao University, Qingdao 266071, China
- State Key Laboratory of Bio-Fibers and Eco-Textiles, Qingdao University, Qingdao 266071, China
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Eco-friendly production of metal nanoparticles immobilised on organic monolith for pepsin extraction. POLISH JOURNAL OF CHEMICAL TECHNOLOGY 2020. [DOI: 10.2478/pjct-2020-0004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Abstract
Polymer monoliths modified by using nanoparticles (NPs) integrate high NP specific surface area with different monolith surface chemistry and high porosity. As a result, they have extensive applications within different fields, whereas nanomaterial-functionalised porous polymer monoliths have elicited considerable interest from investigators. This study is aimed at fabricating organic polymer-based monoliths from polybutyl methacrylate-co-ethylenedimethacrylate (BuMA-co-EDMA) monoliths prior to immobilization of gold or silver metal on the pore surface of the monoliths using reducing reagent (extracts of lemon peels). This was intended to denote a sustainable technique of immobilizing nanoparticles that are advantageous over physical and chemical techniques because it is safe in terms of handling, readily available, environmentally friendly, and cheap. Two different methods were used in the study to effectively immobilize nanoparticles on monolithic components. The outcomes showed that soaking the monolith rod in the prepared nano solution directly and placing it within ovens at temperatures of 80°C constituted the most effective method. Characterisation of the fabricated monolith was undertaken using SEM/EDX analysis, UV-vis. spectra analysis, and visual observation. The SEM analysis showed that nanoparticles were extensively immobilised on the surface polymers. Another peak was attained through EDX analysis, thus confirming the Au atom existence at 2.83% alongside another peak that proved the Ag atom existence at 1.92%. The fabricated components were used as sorbents for purifying protein. The ideal performance was achieved using gold nanoparticles (GNPs) immobilised organic monolith that attained a greater pepsin extraction recovery compared to silver nanoparticles (SNPs) immobilised organic monoliths alongside bare organic-based monolith.
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Ma S, Li Y, Ma C, Wang Y, Ou J, Ye M. Challenges and Advances in the Fabrication of Monolithic Bioseparation Materials and their Applications in Proteomics Research. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2019; 31:e1902023. [PMID: 31502719 DOI: 10.1002/adma.201902023] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 06/29/2019] [Indexed: 06/10/2023]
Abstract
High-performance liquid chromatography integrated with tandem mass spectrometry (HPLC-MS/MS) has become a powerful technique for proteomics research. Its performance heavily depends on the separation efficiency of HPLC, which in turn depends on the chromatographic material. As the "heart" of the HPLC system, the chromatographic material is required to achieve excellent column efficiency and fast analysis. Monolithic materials, fabricated as continuous supports with interconnected skeletal structure and flow-through pores, are regarded as an alternative to particle-packed columns. Such materials are featured with easy preparation, fast mass transfer, high porosity, low back pressure, and miniaturization, and are next-generation separation materials for high-throughput proteins and peptides analysis. Herein, the recent progress regarding the fabrication of various monolithic materials is reviewed. Special emphasis is placed on studies of the fabrication of monolithic capillary columns and their applications in separation of biomolecules by capillary liquid chromatography (cLC). The applications of monolithic materials in the digestion, enrichment, and separation of phosphopeptides and glycopeptides from biological samples are also considered. Finally, advances in comprehensive 2D HPLC separations using monolithic columns are also shown.
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Affiliation(s)
- Shujuan Ma
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
| | - Ya Li
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
| | - Chen Ma
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
| | - Yan Wang
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
| | - Junjie Ou
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Mingliang Ye
- CAS Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
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Liang Y, Zhang L, Zhang Y. Well-Defined Materials for High-Performance Chromatographic Separation. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2019; 12:451-473. [PMID: 30939031 DOI: 10.1146/annurev-anchem-061318-114854] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Chromatographic separation has been widely applied in various fields, such as chemical engineering, precision medicine, energy, and biology. Because chromatographic separation is based on differential partitioning between the mobile phase and stationary phase and affected by band dispersion and mass transfer resistance from these two phases, the materials used as the stationary phase play a decisive role in separation performance. In this review, we discuss the design of separation materials to achieve the separation with high efficiency and high resolution and highlight the well-defined materials with uniform pore structure and unique properties. The achievements, recent developments, challenges, and future trends of such materials are discussed. Furthermore, the surface functionalization of separation ma-terials for further improvement of separation performance is reviewed. Finally, future research directions and the challenges of chromatographic separation are presented.
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Affiliation(s)
- Yu Liang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China;
| | - Lihua Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China;
| | - Yukui Zhang
- CAS Key Lab of Separation Sciences for Analytical Chemistry, National Chromatographic Research and Analysis Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China;
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Pu X, Li J, Qiao P, Li M, Wang H, Zong L, Yuan Q, Duan S. Mesoporous Silica Nanoparticles as a Prospective and Promising Approach for Drug Delivery and Biomedical Applications. Curr Cancer Drug Targets 2019; 19:285-295. [DOI: 10.2174/1568009619666181206114904] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 06/11/2018] [Accepted: 11/26/2018] [Indexed: 01/04/2023]
Abstract
Background:
With the development of nanotechnology, nanocarrier has widely been applied
in such fields as drug delivery, diagnostic and medical imaging and engineering in recent
years. Among all of the available nanocarriers, mesoporous silica nanoparticles (MSNs) have become
a hot issue because of their unique properties, such as large surface area and voidage, tunable
drug loading capacity and release kinetics, good biosafety and easily modified surface.
Objective:
We described the most recent progress in silica-assisted drug delivery and biomedical applications
according to different types of Cargo in order to allow researchers to quickly learn about
the advance in this field.
Methods:
Information has been collected from the recently published literature available mainly
through Title or Abstract search in SpringerLink and PubMed database. Special emphasis is on the
literature available during 2008-2017.
Results:
In this review, the major research advances of MSNs on the drug delivery and biomedical
applications were summarized. The significant advantages of MSNs have also been listed. It was
found that the several significant challenges need to be addressed and investigated to further advance
the applications of these structurally defined nanomaterials.
Conclusion:
Through approaching this review, the researchers can be aware of many new synthetic
methods, smart designs proposed in the recent year and remaining questions of MSNs at present.
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Affiliation(s)
- Xiaohui Pu
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Jia Li
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Peng Qiao
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Mengmeng Li
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Haiyan Wang
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Lanlan Zong
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Qi Yuan
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
| | - Shaofeng Duan
- Institute of Materia Medica, School of Pharmacy, Henan University, Jinming Road, Kaifeng, 475004, China
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Aydoğan C, Gökaltun A, Denizli A, El‐Rassi Z. Organic polymer‐based monolithic capillary columns and their applications in food analysisψ. J Sep Sci 2019; 42:962-979. [DOI: 10.1002/jssc.201801051] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2018] [Revised: 12/13/2018] [Accepted: 12/18/2018] [Indexed: 01/09/2023]
Affiliation(s)
- Cemil Aydoğan
- Department of Food EngineeringBingöl University Bingöl Turkey
| | - Aslıhan Gökaltun
- Department of Chemical EngineeringHacettepe University Ankara Turkey
| | - Adil Denizli
- Department of ChemistryHacettepe University Ankara Turkey
| | - Ziad El‐Rassi
- Department of ChemistryOklahoma State University Stillwater OK USA
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