GPU-based parallel group ICA for functional magnetic resonance data

A multi-variate blind source separation algorithm

BACKGROUND AND OBJECTIVE

The study follows the proposal of decomposing a given data matrix into a product of independent spatial and temporal component matrices. A multi-variate decomposition approach is presented, based on an approximate diagonalization of a set of matrices computed using a latent space representation.

METHODS

The proposed methodology follows an algebraic approach, which is common to space, temporal or spatiotemporal blind source separation algorithms. More specifically, the algebraic approach relies on singular value decomposition techniques, which avoids computationally costly and numerically instable matrix inversion. The method is equally applicable to correlation matrices determined from second order correlations or by considering fourth order correlations.

RESULTS

The resulting algorithms are applied to fMRI data sets either to extract the underlying fMRI components or to extract connectivity maps from resting state fMRI data collected for a dynamic functional connectivity analysis. Intriguingly, our algorithm shows increased spatial specificity compared to common approaches, while temporal precision stays similar.

CONCLUSION

The study presents a novel spatiotemporal blind source separation algorithm, which is both robust and avoids parameters that are difficult to fine tune. Applied on experimental data sets, the new method yields highly confined and focused areas with least spatial extent in the retinotopy case, and similar results in the dynamic functional connectivity analyses compared to other blind source separation algorithms. Therefore, we conclude that our novel algorithm is highly competitive and yields results, which are superior or at least similar to existing approaches.

Brain Functional Plasticity Driven by Career Experience: A Resting-State fMRI Study of the Seafarer

The functional connectome derived from BOLD resting-state functional magnetic resonance imaging data represents meaningful functional organizations and a shift between distinct cognitive states. However, the body of knowledge on how the long-term career experience affects the brain's functional plasticity is still very limited. In this study, we used a dynamic functional connectome characterization (DBFCC) model with the automatic target generation process K-Means clustering to explore the functional reorganization property of resting brain states, driven by long-term career experience. Taking sailors as an example, DBFCC generated seventeen reproducibly common atomic connectome patterns (ACP) and one reproducibly distinct ACP, i.e., ACP14. The common ACPs indicating the same functional topology of the resting brain state transitions were shared by two control groups, while the distinct ACP, which mainly represented functional plasticity and only existed in the sailors, showed close relationships with the long-term career experience of sailors. More specifically, the distinct ACP14 of the sailors was made up of four specific sub-networks, such as the auditory network, visual network, executive control network, and vestibular function-related network, which were most likely linked to sailing experience, i.e., continuously suffering auditory noise, maintaining balance, locating one's position in three-dimensional space at sea, obeying orders, etc. Our results demonstrated DBFCC's effectiveness in revealing the specifically functional alterations modulated by sailing experience and particularly provided the evidence that functional plasticity was beneficial in reorganizing brain's functional topology, which could be driven by career experience.

A novel fMRI group data analysis method based on data-driven reference extracting from group subjects

Group-independent component analysis (GICA) is a well-established blind source separation technique that has been widely applied to study multi-subject functional magnetic resonance imaging (fMRI) data. The group-independent components (GICs) represent the commonness of all of the subjects in the group. Similar to independent component analysis on the single-subject level, the performance of GICA can be improved for multi-subject fMRI data analysis by incorporating a priori information; however, a priori information is not always considered while looking for GICs in existing GICA methods, especially when no obvious or specific knowledge about an unknown group is available. In this paper, we present a novel method to extract the group intrinsic reference from all of the subjects of the group and then incorporate it into the GICA extraction procedure. Comparison experiments between FastICA and GICA with intrinsic reference (GICA-IR) are implemented on the group level with regard to the simulated, hybrid and real fMRI data. The experimental results show that the GICs computed by GICA-IR have a higher correlation with the corresponding independent component of each subject in the group, and the accuracy of activation regions detected by GICA-IR was also improved. These results have demonstrated the advantages of the GICA-IR method, which can better reflect the commonness of the subjects in the group.