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Feng N, Zhou B, Zhang Q, Hua C, Yuan Y. A comprehensive exploration of motion sickness process analysis from EEG signal and virtual reality. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2025; 264:108714. [PMID: 40073460 DOI: 10.1016/j.cmpb.2025.108714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Revised: 03/02/2025] [Accepted: 03/06/2025] [Indexed: 03/14/2025]
Abstract
BACKGROUND AND OBJECTIVE Virtual reality motion sickness is a significant barrier to the widespread adoption of virtual reality technology. Current virtual reality motion sickness detection methods using EEG signals often fail to identify comprehensive neuro-markers and lack generalizability across multiple subjects. METHODS To address this issue, we analyzed the pre- and post-induction phases of virtual reality motion sickness, as well as the induction process, from multiple domain features. The features were extracted from time domain, frequency domain, spatial domain and Riemann space across delta, theta, beta, and all frequency bands. The neuro-markers selected have a correlation greater than 0.5 with behaviors information and showed significant changes in both phases. Five kinds of traditional machine learning methods were used to classify VR motion sickness states in within-in subjects and cross-subjects by using neuro-markers. RESULTS Traditional machine learning methods achieved a maximum accuracy of 92 % for within-subject classification and 68 % for cross-subject classification. Spectral entropy across all frequency bands yielded the highest classification accuracy during the pre- and post-induction phases, while spectral skew showed the most significant changes during the task phase. CONCLUSION These findings suggest that these features hold strong potential for future neurofeedback studies.
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Affiliation(s)
- Naishi Feng
- School of Information Engineering, Shenyang University, Shenyang 110044, China
| | - Bin Zhou
- School of Mathematical Medicine, Zhejiang Normal University, Jinhua 321004, China
| | - Qianqian Zhang
- Faculty of Psychology, University of Vienna, 1010, Austria
| | - Chengcheng Hua
- School of Automation, Nanjing University of Information Science and Technology, Nanjing 210044, China.
| | - Yue Yuan
- School of Information Engineering, Shenyang University, Shenyang 110044, China
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Hernandez CI, Afek N, Gawłowska M, Oświęcimka P, Fafrowicz M, Slowik A, Wnuk M, Marona M, Nowak K, Zur-Wyrozumska K, Amon MJ, Hancock PA, Marek T, Karwowski W. Impact of interferon-β and dimethyl fumarate on nonlinear dynamical characteristics of electroencephalogram signatures in patients with multiple sclerosis. Front Neuroinform 2025; 19:1519391. [PMID: 40092299 PMCID: PMC11906706 DOI: 10.3389/fninf.2025.1519391] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2024] [Accepted: 02/13/2025] [Indexed: 03/19/2025] Open
Abstract
Introduction Multiple sclerosis (MS) is an intricate neurological condition that affects many individuals worldwide, and there is a considerable amount of research into understanding the pathology and treatment development. Nonlinear analysis has been increasingly utilized in analyzing electroencephalography (EEG) signals from patients with various neurological disorders, including MS, and it has been proven to be an effective tool for comprehending the complex nature exhibited by the brain. Methods This study seeks to investigate the impact of Interferon-β (IFN-β) and dimethyl fumarate (DMF) on MS patients using sample entropy (SampEn) and Higuchi's fractal dimension (HFD) on collected EEG signals. The data were collected at Jagiellonian University in Krakow, Poland. In this study, a total of 175 subjects were included across the groups: IFN-β (n = 39), DMF (n = 53), and healthy controls (n = 83). Results The analysis indicated that each treatment group exhibited more complex EEG signals than the control group. SampEn had demonstrated significant sensitivity to the effects of each treatment compared to HFD, while HFD showed more sensitivity to changes over time, particularly in the DMF group. Discussion These findings enhance our understanding of the complex nature of MS, support treatment development, and demonstrate the effectiveness of nonlinear analysis methods.
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Affiliation(s)
- Christopher Ivan Hernandez
- Computational Neuroergonomics Laboratory, Department of Industrial Engineering and Management Systems, University of Central Florida, Orlando, FL, United States
| | - Natalia Afek
- Doctoral School in the Social Sciences, Jagiellonian University, Kraków, Poland
| | - Magda Gawłowska
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Paweł Oświęcimka
- Complex Systems Theory Department, Institute of Nuclear Physics, Polish Academy of Sciences, Kraków, Poland
- Mark Kac Centre for Complex Systems Research, Jagiellonian University, Kraków, Poland
| | - Magdalena Fafrowicz
- Department of Cognitive Neuroscience and Neuroergonomics, Jagiellonian University, Kraków, Poland
| | - Agnieszka Slowik
- Department of Neurology, Jagiellonian University Medical College, Kraków, Poland
- Department of Neurology, University Hospital in Krakow, Kraków, Poland
| | - Marcin Wnuk
- Department of Neurology, Jagiellonian University Medical College, Kraków, Poland
- Department of Neurology, University Hospital in Krakow, Kraków, Poland
| | - Monika Marona
- Department of Neurology, Jagiellonian University Medical College, Kraków, Poland
- Department of Neurology, University Hospital in Krakow, Kraków, Poland
| | - Klaudia Nowak
- Department of Neurology, Jagiellonian University Medical College, Kraków, Poland
- Department of Neurology, University Hospital in Krakow, Kraków, Poland
| | - Kamila Zur-Wyrozumska
- Centre for Innovative Medical Education, Jagiellonian University Medical College, Kraków, Poland
| | - Mary Jean Amon
- Department of Informatics, Luddy School of Informatics, Computing, and Engineering, Indiana University Bloomington, Bloomington, IN, United States
| | - P. A. Hancock
- Department of Psychology, University of Central Florida, Orlando, FL, United States
- Institute for Simulation and Training, University of Central Florida, Orlando, FL, United States
| | - Tadeusz Marek
- Faculty of Psychology, SWPS University, Katowice, Poland
| | - Waldemar Karwowski
- Computational Neuroergonomics Laboratory, Department of Industrial Engineering and Management Systems, University of Central Florida, Orlando, FL, United States
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Chellappan D, Rajaguru H. Generalizability of machine learning models for diabetes detection a study with nordic islet transplant and PIMA datasets. Sci Rep 2025; 15:4479. [PMID: 39915538 PMCID: PMC11802925 DOI: 10.1038/s41598-025-87471-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2024] [Accepted: 01/20/2025] [Indexed: 02/09/2025] Open
Abstract
Diabetes Mellitus (DM) is a global health challenge, and accurate early detection is critical for effective management. The study explores the potential of machine learning for improved diabetes prediction using microarray gene expression data and PIMA data set. Researchers utilizing a hybrid feature extraction method such as Artificial Bee Colony (ABC) and Particle Swarm Optimization (PSO) followed by metaheuristic feature selection algorithms as Harmonic Search (HS), Dragonfly Algorithm (DFA), Elephant Herding Algorithm (EHA). Evaluated the performance of a system by using the following classifiers as Non-Linear Regression-NLR, Linear Regression-LR, Gaussian Mixture Model-GMM, Expectation Maximization-EM, Bayesian Linear Discriminant Analysis-BLDA, Softmax Discriminant Classifier-SDC, and Support Vector Machine with Radial Basis Function kernel-SVM-RBF classifier on two publicly available datasets namely the Nordic Islet Transplant Program (NITP) and the PIMA Indian Diabetes Dataset (PIDD). The findings demonstrate significant improvement in classification accuracy compared to using all genes. On the Nordic islet transplant dataset, the combined ABC-PSO feature extraction with EHO feature selection achieved the highest accuracy of 97.14%, surpassing the 94.28% accuracy obtained with ABC alone and EHO selection. Similarly, on the PIMA Indian diabetes dataset, the ABC-PSO and EHO combination achieved the best accuracy of 98.13%, exceeding the 95.45% accuracy with ABC and DFA selection. These results highlight the effectiveness of our proposed approach in identifying the most informative features for accurate diabetes prediction. It is observed that the parametric values attained for the datasets are almost similar. Therefore, this research indicates the robustness of the FE and FS along with classifier techniques with two different datasets.
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Affiliation(s)
- Dinesh Chellappan
- Department of Electrical and Electronics Engineering, KPR Institute of Engineering and Technology, Coimbatore, Tamil Nadu, 641 407, India.
| | - Harikumar Rajaguru
- Department of Electronics and Communication Engineering, Bannari Amman Institute of Technology, Sathyamangalam, Tamil Nadu, 638 401, India
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Anderson K, Stein S, Suen H, Purcell M, Belci M, McCaughey E, McLean R, Khine A, Vuckovic A. Generalisation of EEG-Based Pain Biomarker Classification for Predicting Central Neuropathic Pain in Subacute Spinal Cord Injury. Biomedicines 2025; 13:213. [PMID: 39857795 PMCID: PMC11759196 DOI: 10.3390/biomedicines13010213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2024] [Revised: 01/12/2025] [Accepted: 01/12/2025] [Indexed: 01/27/2025] Open
Abstract
Background: The objective was to test the generalisability of electroencephalography (EEG) markers of future pain using two independent datasets. Methods: Datasets, A [N = 20] and B [N = 35], were collected from participants with subacute spinal cord injury who did not have neuropathic pain at the time of recording. In both datasets, some participants developed pain within six months, (PDP) will others did not (PNP). EEG features were extracted based on either band power or Higuchi fractal dimension (HFD). Three levels of generalisability were tested: (1) classification PDP vs. PNP in datasets A and B separately; (2) classification between groups in datasets A and B together; and (3) classification where one dataset (A or B) was used for training and testing, and the other for validation. A novel normalisation method was applied to HFD features. Results: Training and testing of individual datasets achieved classification accuracies of >80% using either feature set, and classification of joint datasets (A and B) achieved a maximum accuracy of 86.4% (HFD, support vector machine (SVM)). With normalisation and feature reduction (principal components), the validation accuracy was 66.6%. Conclusions: An SVM classifier with HFD features showed the best robustness, and normalisation improved the accuracy of predicting future neuropathic pain well above the chance level.
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Affiliation(s)
- Keri Anderson
- Biomedical Engineering Division, James Watt School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
| | - Sebastian Stein
- School of Computing Science, University of Glasgow, Glasgow G12 8QQ, UK;
| | - Ho Suen
- Biomedical Engineering Division, James Watt School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
| | - Mariel Purcell
- Queen Elizabeth National Spinal Injuries Unit, Queen Elizabeth University Hospital, Glasgow G51 4TF, UK
| | - Maurizio Belci
- Stoke Mandeville Spinal Injuries Centre, Stoke Mandeville Hospital, Aylesbury HP21 8AL, UK (A.K.)
| | - Euan McCaughey
- Queen Elizabeth National Spinal Injuries Unit, Queen Elizabeth University Hospital, Glasgow G51 4TF, UK
| | - Ronali McLean
- Queen Elizabeth National Spinal Injuries Unit, Queen Elizabeth University Hospital, Glasgow G51 4TF, UK
| | - Aye Khine
- Stoke Mandeville Spinal Injuries Centre, Stoke Mandeville Hospital, Aylesbury HP21 8AL, UK (A.K.)
| | - Aleksandra Vuckovic
- Biomedical Engineering Division, James Watt School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
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Garehdaghi F, Sarbaz Y. A robust method for parkinson's disease diagnosis: Combining electroencephalography signal features with reconstructed phase space images. Med Eng Phys 2025; 135:104276. [PMID: 39922654 DOI: 10.1016/j.medengphy.2024.104276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 11/09/2024] [Accepted: 12/09/2024] [Indexed: 02/10/2025]
Abstract
Parkinson's disease (PD) is a neurodegenerative disease. Since the diagnosis of the PD is mainly made based on the symptoms and after the disease progression, early diagnosis can play a crucial role in delaying the passage of the PD. There have been many methods focusing on disease diagnosis using electroencephalography (EEG) signals, where most of the proposed methods are data-dependent. Here, the study aims to propose a technique that, despite its high accuracy, is robust. Various features including fractal dimension, approximate entropy, largest Lyapunov exponent, and the energy of different frequency sub-bands were extracted from EEG signals. Multi-layer perceptron neural networks were used for classification based on these features. Additionally, 2D phase space images reconstructed from EEG signals were classified using convolutional neural networks. Finally, a combination of these features and images was used for classification using ResNets. During 10 rounds of training and testing, the mean accuracies were calculated for three cases: using only features, only images, and a combination of both. The mean accuracies were 84.67 %, 76.5 %, and 90.2 % respectively. The variances for each case were 35.6 %, 19.5 %, and 13.97 %. The lower variance when using a combination of features and images indicates a more accurate and robust classification.
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Affiliation(s)
- Farnaz Garehdaghi
- Modeling Biological System's Laboratory, Department of Biomedical Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, Tabriz, Iran
| | - Yashar Sarbaz
- Modeling Biological System's Laboratory, Department of Biomedical Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, Tabriz, Iran.
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Päeske L, Hinrikus H, Lass J, Põld T, Bachmann M. The Impact of the Natural Level of Blood Biochemicals on Electroencephalographic Markers in Healthy People. SENSORS (BASEL, SWITZERLAND) 2024; 24:7438. [PMID: 39685972 DOI: 10.3390/s24237438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2024] [Revised: 11/10/2024] [Accepted: 11/20/2024] [Indexed: 12/18/2024]
Abstract
This study aims to investigate the association between the natural level of blood biomarkers and electroencephalographic (EEG) markers. Resting EEG theta, alpha (ABP), beta, and gamma frequency band powers were selected as linear EEG markers indicating the level of EEG power, and Higuchi's fractal dimension (HFD) as a nonlinear EEG complexity marker reflecting brain temporal dynamics. The impact of seven different blood biomarkers, i.e., glucose, protein, lipoprotein, HDL, LDL, C-reactive protein, and cystatin C, was investigated. The study was performed on a group of 52 healthy participants. The results of the current study show that one linear EEG marker, ABP, is correlated with protein. The nonlinear EEG marker (HFD) is correlated with protein, lipoprotein, C-reactive protein, and cystatin C. A positive correlation with linear EEG power markers and a negative correlation with the nonlinear complexity marker dominate in all brain areas. The results demonstrate that EEG complexity is more sensitive to the natural level of blood biomarkers than the level of EEG power. The reported novel findings demonstrate that the EEG markers of healthy people are influenced by the natural levels of their blood biomarkers related to their everyday dietary habits. This knowledge is useful in the interpretation of EEG signals and contributes to obtaining information about people quality of life and well-being.
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Affiliation(s)
- Laura Päeske
- Department of Health Technologies, Tallinn University of Technology, 19086 Tallinn, Estonia
| | - Hiie Hinrikus
- Department of Health Technologies, Tallinn University of Technology, 19086 Tallinn, Estonia
| | - Jaanus Lass
- Department of Health Technologies, Tallinn University of Technology, 19086 Tallinn, Estonia
| | - Toomas Põld
- Meliva Medical Center, 10143 Tallinn, Estonia
| | - Maie Bachmann
- Department of Health Technologies, Tallinn University of Technology, 19086 Tallinn, Estonia
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Donoghue T, Hammonds R, Lybrand E, Washcke L, Gao R, Voytek B. Evaluating and Comparing Measures of Aperiodic Neural Activity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.09.15.613114. [PMID: 39314334 PMCID: PMC11419150 DOI: 10.1101/2024.09.15.613114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
Abstract
Neuro-electrophysiological recordings contain prominent aperiodic activity - meaning irregular activity, with no characteristic frequency - which has variously been referred to as 1/f (or 1/f-like activity), fractal, or 'scale-free' activity. Previous work has established that aperiodic features of neural activity is dynamic and variable, relating (between subjects) to healthy aging and to clinical diagnoses, and also (within subjects) tracking conscious states and behavioral performance. There are, however, a wide variety of conceptual frameworks and associated methods for the analyses and interpretation of aperiodic activity - for example, time domain measures such as the autocorrelation, fractal measures, and/or various complexity and entropy measures, as well as measures of the aperiodic exponent in the frequency domain. There is a lack of clear understanding of how these different measures relate to each other and to what extent they reflect the same or different properties of the data, which makes it difficult to synthesize results across approaches and complicates our overall understanding of the properties, biological significance, and demographic, clinical, and behavioral correlates of aperiodic neural activity. To address this problem, in this project we systematically survey the different approaches for measuring aperiodic neural activity, starting with an automated literature analysis to curate a collection of the most common methods. We then evaluate and compare these methods, using statistically representative time series simulations. In doing so, we establish consistent relationships between the measures, showing that much of what they capture reflects shared variance - though with some notable idiosyncrasies. Broadly, frequency domain methods are more specific to aperiodic features of the data, whereas time domain measures are more impacted by oscillatory activity. We extend this analysis by applying the measures to a series of empirical EEG and iEEG datasets, replicating the simulation results. We conclude by summarizing the relationships between the multiple methods, emphasizing opportunities for reexamining previous findings and for future work.
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Affiliation(s)
- Thomas Donoghue
- Department of Cognitive Science, University of California, San Diego
| | - Ryan Hammonds
- Department of Cognitive Science, University of California, San Diego
| | - Eric Lybrand
- Department of Mathematics, University of California, San Diego
| | - Leonhard Washcke
- Max Planck UCL Centre for Computational Psychiatry and Ageing Research, Max Planck Institute for Human Development, Germany
- Center for Lifespan Psychology, Max Planck Institute for Human Development, Germany
| | - Richard Gao
- Department of Cognitive Science, University of California, San Diego
| | - Bradley Voytek
- Department of Cognitive Science, University of California, San Diego
- Neurosciences Graduate Program, University of California, San Diego
- Halıcıoğlu Data Science Institute
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Denier N, Grieder M, Jann K, Breit S, Mertse N, Walther S, Soravia LM, Meyer A, Federspiel A, Wiest R, Bracht T. Analyzing fractal dimension in electroconvulsive therapy: Unraveling complexity in structural and functional neuroimaging. Neuroimage 2024; 297:120671. [PMID: 38901774 DOI: 10.1016/j.neuroimage.2024.120671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 05/21/2024] [Accepted: 06/06/2024] [Indexed: 06/22/2024] Open
Abstract
BACKGROUND Numerous studies show that electroconvulsive therapy (ECT) induces hippocampal neuroplasticity, but findings are inconsistent regarding its clinical relevance. This study aims to investigate ECT-induced plasticity of anterior and posterior hippocampi using mathematical complexity measures in neuroimaging, namely Higuchi's fractal dimension (HFD) for fMRI time series and the fractal dimension of cortical morphology (FD-CM). Furthermore, we explore the potential of these complexity measures to predict ECT treatment response. METHODS Twenty patients with a current depressive episode (16 with major depressive disorder and 4 with bipolar disorder) underwent MRI-scans before and after an ECT-series. Twenty healthy controls matched for age and sex were also scanned twice for comparison purposes. Resting-state fMRI data were processed, and HFD was computed for anterior and posterior hippocampi. Group-by-time effects for HFD in anterior and posterior hippocampi were calculated and correlations between HFD changes and improvement in depression severity were examined. For FD-CM analyses, we preprocessed structural MRI with CAT12's surface-based methods. We explored group-by-time effects for FD-CM and the predictive value of baseline HFD and FD-CM for treatment outcome. RESULTS Patients exhibited a significant increase in bilateral hippocampal HFD from baseline to follow-up scans. Right anterior hippocampal HFD increase was associated with reductions in depression severity. We found no group differences and group-by-time effects in FD-CM. After applying a whole-brain regression analysis, we found that baseline FD-CM in the left temporal pole predicted reduction of overall depression severity after ECT. Baseline hippocampal HFD did not predict treatment outcome. CONCLUSION This study suggests that HFD and FD-CM are promising imaging markers to investigate ECT-induced neuroplasticity associated with treatment response.
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Affiliation(s)
- Niklaus Denier
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland.
| | - Matthias Grieder
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland
| | - Kay Jann
- USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, United States
| | - Sigrid Breit
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Nicolas Mertse
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Sebastian Walther
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Leila M Soravia
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
| | - Agnes Meyer
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland
| | - Andrea Federspiel
- Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland; Institute of Diagnostic and Interventional Neuroradiology, University of Bern, Bern, Switzerland
| | - Roland Wiest
- Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland; Institute of Diagnostic and Interventional Neuroradiology, University of Bern, Bern, Switzerland
| | - Tobias Bracht
- Translational Research Center, University Hospital of Psychiatry and Psychotherapy, University of Bern, Bern, Switzerland; Translational Imaging Center (TIC), Swiss Institute for Translational and Entrepreneurial Medicine, Bern, Switzerland
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Ack SE, Dolmans RG, Foreman B, Manley GT, Rosenthal ES, Zabihi M. Deriving Automated Device Metadata From Intracranial Pressure Waveforms: A Transforming Research and Clinical Knowledge in Traumatic Brain Injury ICU Physiology Cohort Analysis. Crit Care Explor 2024; 6:e1118. [PMID: 39016273 PMCID: PMC11254120 DOI: 10.1097/cce.0000000000001118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2024] Open
Abstract
IMPORTANCE Treatment for intracranial pressure (ICP) has been increasingly informed by machine learning (ML)-derived ICP waveform characteristics. There are gaps, however, in understanding how ICP monitor type may bias waveform characteristics used for these predictive tools since differences between external ventricular drain (EVD) and intraparenchymal monitor (IPM)-derived waveforms have not been well accounted for. OBJECTIVES We sought to develop a proof-of-concept ML model differentiating ICP waveforms originating from an EVD or IPM. DESIGN, SETTING, AND PARTICIPANTS We examined raw ICP waveform data from the ICU physiology cohort within the prospective Transforming Research and Clinical Knowledge in Traumatic Brain Injury multicenter study. MAIN OUTCOMES AND MEASURES Nested patient-wise five-fold cross-validation and group analysis with bagged decision trees (BDT) and linear discriminant analysis were used for feature selection and fair evaluation. Nine patients were kept as unseen hold-outs for further evaluation. RESULTS ICP waveform data totaling 14,110 hours were included from 82 patients (EVD, 47; IPM, 26; both, 9). Mean age, Glasgow Coma Scale (GCS) total, and GCS motor score upon admission, as well as the presence and amount of midline shift, were similar between groups. The model mean area under the receiver operating characteristic curve (AU-ROC) exceeded 0.874 across all folds. In additional rigorous cluster-based subgroup analysis, targeted at testing the resilience of models to cross-validation with smaller subsets constructed to develop models in one confounder set and test them in another subset, AU-ROC exceeded 0.811. In a similar analysis using propensity score-based rather than cluster-based subgroup analysis, the mean AU-ROC exceeded 0.827. Of 842 extracted ICP features, 62 were invariant within every analysis, representing the most accurate and robust differences between ICP monitor types. For the nine patient hold-outs, an AU-ROC of 0.826 was obtained using BDT. CONCLUSIONS AND RELEVANCE The developed proof-of-concept ML model identified differences in EVD- and IPM-derived ICP signals, which can provide missing contextual data for large-scale retrospective datasets, prevent bias in computational models that ingest ICP data indiscriminately, and control for confounding using our model's output as a propensity score by to adjust for the monitoring method that was clinically indicated. Furthermore, the invariant features may be leveraged as ICP features for anomaly detection.
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Affiliation(s)
- Sophie E. Ack
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA
| | - Rianne G.F. Dolmans
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA
- Department of Neurosurgery, Leiden University Medical Center, Leiden, The Netherlands
| | - Brandon Foreman
- Department of Neurology, University of Cincinnati, Cincinnati, OH
| | - Geoffrey T. Manley
- Department of Neurology, University of California San Francisco, San Francisco, CA
| | - Eric S. Rosenthal
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA
| | - Morteza Zabihi
- Department of Neurology, Massachusetts General Hospital, Harvard Medical School, Boston, MA
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Abdel-Ghaffar EA, Salama M. The Effect of Stress on a Personal Identification System Based on Electroencephalographic Signals. SENSORS (BASEL, SWITZERLAND) 2024; 24:4167. [PMID: 39000946 PMCID: PMC11244475 DOI: 10.3390/s24134167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 06/12/2024] [Accepted: 06/18/2024] [Indexed: 07/16/2024]
Abstract
Personal identification systems based on electroencephalographic (EEG) signals have their own strengths and limitations. The stability of EEG signals strongly affects such systems. The human emotional state is one of the important factors that affects EEG signals' stability. Stress is a major emotional state that affects individuals' capability to perform day-to-day tasks. The main objective of this work is to study the effect of mental and emotional stress on such systems. Two experiments have been performed. In the first, we used hand-crafted features (time domain, frequency domain, and non-linear features), followed by a machine learning classifier. In the second, raw EEG signals were used as an input for the deep learning approaches. Different types of mental and emotional stress have been examined using two datasets, SAM 40 and DEAP. The proposed experiments proved that performing enrollment in a relaxed or calm state and identification in a stressed state have a negative effect on the identification system's performance. The best achieved accuracy for the DEAP dataset was 99.67% in the calm state and 96.67% in the stressed state. For the SAM 40 dataset, the best accuracy was 99.67%, 93.33%, 92.5%, and 91.67% for the relaxed state and stress caused by identifying mirror images, the Stroop color-word test, and solving arithmetic operations, respectively.
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11
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Fiorenzato E, Moaveninejad S, Weis L, Biundo R, Antonini A, Porcaro C. Brain Dynamics Complexity as a Signature of Cognitive Decline in Parkinson's Disease. Mov Disord 2024; 39:305-317. [PMID: 38054573 DOI: 10.1002/mds.29678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 11/13/2023] [Accepted: 11/17/2023] [Indexed: 12/07/2023] Open
Abstract
BACKGROUND Higuchi's fractal dimension (FD) captures brain dynamics complexity and may be a promising method to analyze resting-state functional magnetic resonance imaging (fMRI) data and detect the neuronal interaction complexity underlying Parkinson's disease (PD) cognitive decline. OBJECTIVES The aim was to compare FD with a more established index of spontaneous neural activity, the fractional amplitude of low-frequency fluctuations (fALFF), and identify through machine learning (ML) models which method could best distinguish across PD-cognitive states, ranging from normal cognition (PD-NC), mild cognitive impairment (PD-MCI) to dementia (PDD). Finally, the aim was to explore correlations between fALFF and FD with clinical and cognitive PD features. METHODS Among 118 PD patients age-, sex-, and education matched with 35 healthy controls, 52 were classified with PD-NC, 46 with PD-MCI, and 20 with PDD based on an extensive cognitive and clinical evaluation. fALFF and FD metrics were computed on rs-fMRI data and used to train ML models. RESULTS FD outperformed fALFF metrics in differentiating between PD-cognitive states, reaching an overall accuracy of 78% (vs. 62%). PD showed increased neuronal dynamics complexity within the sensorimotor network, central executive network (CEN), and default mode network (DMN), paralleled by a reduction in spontaneous neuronal activity within the CEN and DMN, whose increased complexity was strongly linked to the presence of dementia. Further, we found that some DMN critical hubs correlated with worse cognitive performance and disease severity. CONCLUSIONS Our study indicates that PD-cognitive decline is characterized by an altered spontaneous neuronal activity and increased temporal complexity, involving the CEN and DMN, possibly reflecting an increased segregation of these networks. Therefore, we propose FD as a prognostic biomarker of PD-cognitive decline. © 2023 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society.
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Affiliation(s)
- Eleonora Fiorenzato
- Parkinson's Disease and Movement Disorders Unit, Department of Neuroscience, Centre for Rare Neurological Diseases (ERN-RND), University of Padova, Padova, Italy
| | - Sadaf Moaveninejad
- Department of Neuroscience and Padova Neuroscience Center, University of Padua, Padua, Italy
| | - Luca Weis
- Parkinson's Disease and Movement Disorders Unit, Department of Neuroscience, Centre for Rare Neurological Diseases (ERN-RND), University of Padova, Padova, Italy
- IRCCS, San Camillo Hospital, Venice, Italy
| | - Roberta Biundo
- Parkinson's Disease and Movement Disorders Unit, Department of Neuroscience, Centre for Rare Neurological Diseases (ERN-RND), University of Padova, Padova, Italy
- Department of Neuroscience, Center for Neurodegenerative Disease Research (CESNE), University of Padova, Padova, Italy
- Department of General Psychology, University of Padua, Padua, Italy
| | - Angelo Antonini
- Parkinson's Disease and Movement Disorders Unit, Department of Neuroscience, Centre for Rare Neurological Diseases (ERN-RND), University of Padova, Padova, Italy
- Department of Neuroscience and Padova Neuroscience Center, University of Padua, Padua, Italy
- Department of Neuroscience, Center for Neurodegenerative Disease Research (CESNE), University of Padova, Padova, Italy
| | - Camillo Porcaro
- Department of Neuroscience and Padova Neuroscience Center, University of Padua, Padua, Italy
- Institute of Cognitive Sciences and Technologies-National Research Council, Rome, Italy
- Centre for Human Brain Health and School of Psychology, University of Birmingham, Birmingham, United Kingdom
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12
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Moaveninejad S, D'Onofrio V, Tecchio F, Ferracuti F, Iarlori S, Monteriù A, Porcaro C. Fractal Dimension as a discriminative feature for high accuracy classification in motor imagery EEG-based brain-computer interface. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 244:107944. [PMID: 38064955 DOI: 10.1016/j.cmpb.2023.107944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 10/31/2023] [Accepted: 11/24/2023] [Indexed: 01/26/2024]
Abstract
BACKGROUND AND OBJECTIVE The brain-computer interface (BCI) technology acquires human brain electrical signals, which can be effectively and successfully used to control external devices, potentially supporting subjects suffering from motor impairments in the interaction with the environment. To this aim, BCI systems must correctly decode and interpret neurophysiological signals reflecting the intention of the subjects to move. Therefore, the accurate classification of single events in motor tasks represents a fundamental challenge in ensuring efficient communication and control between users and BCIs. Movement-associated changes in electroencephalographic (EEG) sensorimotor rhythms, such as event-related desynchronization (ERD), are well-known features of discriminating motor tasks. Fractal dimension (FD) can be used to evaluate the complexity and self-similarity in brain signals, potentially providing complementary information to frequency-based signal features. METHODS In the present work, we introduce FD as a novel feature for subject-independent event classification, and we test several machine learning (ML) models in behavioural tasks of motor imagery (MI) and motor execution (ME). RESULTS Our results show that FD improves the classification accuracy of ML compared to ERD. Furthermore, unilateral hand movements have higher classification accuracy than bilateral movements in both MI and ME tasks. CONCLUSIONS These results provide further insights into subject-independent event classification in BCI systems and demonstrate the potential of FD as a discriminative feature for EEG signals.
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Affiliation(s)
| | | | - Franca Tecchio
- Institute of Cognitive Sciences and Technologies (ISCT) - National Research Council (CNR), 00185 Rome, Italy
| | - Francesco Ferracuti
- Department of Information Engineering, Università Politecnica delle Marche, 60131 Ancona, Italy
| | - Sabrina Iarlori
- Department of Information Engineering, Università Politecnica delle Marche, 60131 Ancona, Italy
| | - Andrea Monteriù
- Department of Information Engineering, Università Politecnica delle Marche, 60131 Ancona, Italy
| | - Camillo Porcaro
- Department of Neuroscience, University of Padova, 35128 Padua, Italy; Padova Neuroscience Center (PNC), University of Padova, 35131 Padua, Italy; Institute of Cognitive Sciences and Technologies (ISCT) - National Research Council (CNR), 00185 Rome, Italy; Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham B15 2TT, UK.
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13
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Fazzari C, Macchi R, Kunimasa Y, Ressam C, Casanova R, Chavet P, Nicol C. Muscle synergies inherent in simulated hypogravity running reveal flexible but not unconstrained locomotor control. Sci Rep 2024; 14:2707. [PMID: 38302569 PMCID: PMC10834966 DOI: 10.1038/s41598-023-50076-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 12/15/2023] [Indexed: 02/03/2024] Open
Abstract
With human space exploration back in the spotlight, recent studies have investigated the neuromuscular adjustments to simulated hypogravity running. They have examined the activity of individual muscles, whereas the central nervous system may rather activate groups of functionally related muscles, known as muscle synergies. To understand how locomotor control adjusts to simulated hypogravity, we examined the temporal (motor primitives) and spatial (motor modules) components of muscle synergies in participants running sequentially at 100%, 60%, and 100% body weight on a treadmill. Our results highlighted the paradoxical nature of simulated hypogravity running: The reduced mechanical constraints allowed for a more flexible locomotor control, which correlated with the degree of spatiotemporal adjustments. Yet, the increased temporal (shortened stance phase) and sensory (deteriorated proprioceptive feedback) constraints required wider motor primitives and a higher contribution of the hamstring muscles during the stance phase. These results are a first step towards improving astronaut training protocols.
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Affiliation(s)
| | - Robin Macchi
- Aix-Marseille Univ, CNRS, ISM, Marseille, France
- French Institute of Sport (INSEP), Laboratory Sport, Expertise and Performance (EA 7370), Paris, France
| | | | - Camélia Ressam
- NeuroSpin, UMR CEA/CNRS 9027, Paris-Saclay University, Gif-sur-Yvette, France
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14
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Khan MSI, Jelinek HF. Point of Care Testing (POCT) in Psychopathology Using Fractal Analysis and Hilbert Huang Transform of Electroencephalogram (EEG). ADVANCES IN NEUROBIOLOGY 2024; 36:693-715. [PMID: 38468059 DOI: 10.1007/978-3-031-47606-8_35] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Research has shown that relying only on self-reports for diagnosing psychiatric disorders does not yield accurate results at all times. The advances of technology as well as artificial intelligence and other machine learning algorithms have allowed the introduction of point of care testing (POCT) including EEG characterization and correlations with possible psychopathology. Nonlinear methods of EEG analysis have significant advantages over linear methods. Empirical mode decomposition (EMD) is a reliable nonlinear method of EEG pre-processing. In this chapter, we compare two existing EEG complexity measures - Higuchi fractal dimension (HFD) and sample entropy (SE), with our newly proposed method using Higuchi fractal dimension from the Hilbert Huang transform (HFD-HHT). We present an example using the three complexity measures on a 2-minute EEG recorded from a healthy 20-year-old male after signal pre-processing. Furthermore, we showed the usefulness of these complexity measures in the classification of major depressive disorder (MDD) with healthy controls. Our study is in line with previous research and has shown an increase in HFD and SE values in the full, alpha and beta frequency bands suggestive of an increase in EEG irregularity. Moreover, the HFD-HHT values decreased in those three bands for majority of electrodes which is suggestive of a decrease in irregularity in the frequency-time domain. We conclude that all three complexity measures can be vital features useful for EEG analysis which could be incorporated in POCT systems.
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Affiliation(s)
| | - Herbert F Jelinek
- Department of Medical Sciences and Biotechnology Center, Khalifa University, Abu Dhabi, UAE
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15
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Fauchon C, Bastuji H, Peyron R, Garcia-Larrea L. Fractal Similarity of Pain Brain Networks. ADVANCES IN NEUROBIOLOGY 2024; 36:639-657. [PMID: 38468056 DOI: 10.1007/978-3-031-47606-8_32] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
The conscious perception of pain is the result of dynamic interactions of neural activities from local brain regions to distributed brain networks. Mapping out the networks of functional connections between brain regions that form and disperse when an experimental participant received nociceptive stimulations allow to characterize the pattern of network connections related to the pain experience.Although the pattern of intra- and inter-areal connections across the brain are incredibly complex, they appear also largely scale free, with "fractal" connectivity properties reproducing at short and long-time scales. Our results combining intracranial recordings and functional imaging in humans during pain indicate striking similarities in the activity and topological representation of networks at different orders of temporality, with reproduction of patterns of activation from the millisecond to the multisecond range. The connectivity analyzed using graph theory on fMRI data was organized in four sets of brain regions matching those identified through iEEG (i.e., sensorimotor, default mode, central executive, and amygdalo-hippocampal).Here, we discuss similarities in brain network organization at different scales or "orders," in participants as they feel pain. Description of this fractal-like organization may provide clues about how our brain regions work together to create the perception of pain and how pain becomes chronic when its organization is altered.
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Affiliation(s)
- Camille Fauchon
- Université Clermont Auvergne, CHU de Clermont-Ferrand, Inserm, Neuro-Dol, Clermont-Ferrand, France.
- Université Jean Monnet, Inserm, CRNL, NeuroPain, Saint-Etienne, France.
| | - Hélène Bastuji
- Université Claude Bernard Lyon 1, UJM, Inserm, CRNL, NeuroPain, Bron, France
| | - Roland Peyron
- Université Jean Monnet, Inserm, CRNL, NeuroPain, Saint-Etienne, France
- CHU, centre de la douleur, Saint-Etienne, France
| | - Luis Garcia-Larrea
- Université Claude Bernard Lyon 1, UJM, Inserm, CRNL, NeuroPain, Bron, France
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16
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Wolfson SS, Kirk I, Waldie K, King C. EEG Complexity Analysis of Brain States, Tasks and ASD Risk. ADVANCES IN NEUROBIOLOGY 2024; 36:733-759. [PMID: 38468061 DOI: 10.1007/978-3-031-47606-8_37] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Autism spectrum disorder is an increasingly prevalent and debilitating neurodevelopmental condition and an electroencephalogram (EEG) diagnostic challenge. Despite large amounts of electrophysiological research over many decades, an EEG biomarker for autism spectrum disorder (ASD) has not been found. We hypothesized that reductions in complex dynamical system behaviour in the human central nervous system as part of the macroscale neuronal function during cognitive processes might be detectable in whole EEG for higher-risk ASD adults. In three studies, we compared the medians of correlation dimension, largest Lyapunov exponent, Higuchi's fractal dimension, multiscale entropy, multifractal detrended fluctuation analysis and Kolmogorov complexity during resting, cognitive and social skill tasks in 20 EEG channels of 39 adults over a range of ASD risk. We found heterogeneous complexity distribution with clusters of hierarchical sequences pointing to potential cognitive processing differences, but no clear distinction based on ASD risk. We suggest that there is indication of statistically significant differences between complexity measures of brain states and tasks. Though replication of our studies is needed with a larger sample, we believe that our electrophysiological and analytic approach has potential as a biomarker for earlier ASD diagnosis.
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Affiliation(s)
- Stephen S Wolfson
- The University of Auckland School of Psychology, Auckland, Auckland, New Zealand.
| | - Ian Kirk
- The University of Auckland School of Psychology, Auckland, Auckland, New Zealand
| | - Karen Waldie
- The University of Auckland School of Psychology, Auckland, Auckland, New Zealand
| | - Chris King
- The University of Auckland School of Psychology, Auckland, Auckland, New Zealand
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17
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Porcaro C, Moaveninejad S, D'Onofrio V, DiIeva A. Fractal Time Series: Background, Estimation Methods, and Performances. ADVANCES IN NEUROBIOLOGY 2024; 36:95-137. [PMID: 38468029 DOI: 10.1007/978-3-031-47606-8_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Over the past 40 years, from its classical application in the characterization of geometrical objects, fractal analysis has been progressively applied to study time series in several different disciplines. In neuroscience, starting from identifying the fractal properties of neuronal and brain architecture, attention has shifted to evaluating brain signals in the time domain. Classical linear methods applied to analyzing neurophysiological signals can lead to classifying irregular components as noise, with a potential loss of information. Thus, characterizing fractal properties, namely, self-similarity, scale invariance, and fractal dimension (FD), can provide relevant information on these signals in physiological and pathological conditions. Several methods have been proposed to estimate the fractal properties of these neurophysiological signals. However, the effects of signal characteristics (e.g., its stationarity) and other signal parameters, such as sampling frequency, amplitude, and noise level, have partially been tested. In this chapter, we first outline the main properties of fractals in the domain of space (fractal geometry) and time (fractal time series). Then, after providing an overview of the available methods to estimate the FD, we test them on synthetic time series (STS) with different sampling frequencies, signal amplitudes, and noise levels. Finally, we describe and discuss the performances of each method and the effect of signal parameters on the accuracy of FD estimation.
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Affiliation(s)
- Camillo Porcaro
- Department of Neuroscience (DNS) and Padova Neuroscience Center (PNC), University of Padova, Padua, Italy.
- Institute of Cognitive Sciences and Technologies (ISTC) National Research Council (CNR), Rome, Italy.
- Centre for Human Brain Health, School of Psychology, University of Birmingham, Birmingham, UK.
| | | | | | - Antonio DiIeva
- Computational NeuroSurgery (CNS) Lab & Macquarie Neurosurgery, Macquarie Medical School, Faculty of Medicine, Human and Health Sciences, Macquarie University, Sydney, NSW, Australia
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18
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Armonaite K, Conti L, Tecchio F. Fractal Neurodynamics. ADVANCES IN NEUROBIOLOGY 2024; 36:659-675. [PMID: 38468057 DOI: 10.1007/978-3-031-47606-8_33] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
The neuronal ongoing electrical activity in the brain network, the neurodynamics, reflects the structure and functionality of generating neuronal pools. The activity of neurons due to their excitatory and inhibitory projections is associated with specific brain functions. Here, the purpose was to investigate if the local ongoing electrical activity exhibits its characteristic spectral and fractal features in wakefulness and sleep across and within subjects. Moreover, we aimed to show that measures typical of complex systems catch physiological features missed by linear spectral analyses. For this study, we concentrated on the evaluation of the power spectral density (PSD) and Higuchi fractal dimension (HFD) measures. Relevant clinical impact of the specific features of neurodynamics identification stands primarily in the potential of classifying cortical parcels according to their neurodynamics as well as enhancing the effectiveness of neuromodulation interventions to cure symptoms secondary to neuronal activity unbalances.
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Affiliation(s)
| | - Livio Conti
- Faculty of Engineering, Uninettuno University, Rome, Italy
| | - Franca Tecchio
- Istituto di Scienze e Tecnologie della Cognizione, Consiglio Nazionale delle Ricerche, Rome, Italy.
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19
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Xing X, Dong WF, Xiao R, Song M, Jiang C. Analysis of the Chaotic Component of Photoplethysmography and Its Association with Hemodynamic Parameters. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1582. [PMID: 38136462 PMCID: PMC10742563 DOI: 10.3390/e25121582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 11/20/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023]
Abstract
Wearable technologies face challenges due to signal instability, hindering their usage. Thus, it is crucial to comprehend the connection between dynamic patterns in photoplethysmography (PPG) signals and cardiovascular health. In our study, we collected 401 multimodal recordings from two public databases, evaluating hemodynamic conditions like blood pressure (BP), cardiac output (CO), vascular compliance (C), and peripheral resistance (R). Using irregular-resampling auto-spectral analysis (IRASA), we quantified chaotic components in PPG signals and employed different methods to measure the fractal dimension (FD) and entropy. Our findings revealed that in surgery patients, the power of chaotic components increased with vascular stiffness. As the intensity of CO fluctuations increased, there was a notable strengthening in the correlation between most complexity measures of PPG and these parameters. Interestingly, some conventional morphological features displayed a significant decrease in correlation, indicating a shift from a static to dynamic scenario. Healthy subjects exhibited a higher percentage of chaotic components, and the correlation between complexity measures and hemodynamics in this group tended to be more pronounced. Causal analysis showed that hemodynamic fluctuations are main influencers for FD changes, with observed feedback in most cases. In conclusion, understanding chaotic patterns in PPG signals is vital for assessing cardiovascular health, especially in individuals with unstable hemodynamics or during ambulatory testing. These insights can help overcome the challenges faced by wearable technologies and enhance their usage in real-world scenarios.
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Affiliation(s)
- Xiaoman Xing
- School of Biomedical Engineering (Suzhou), Division of Life Sciences and Medicine, University of Sciences and Technology of China, Suzhou 215163, China
- Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou 215163, China
| | - Wen-Fei Dong
- Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou 215163, China
| | - Renjie Xiao
- Medical Health Information Center, Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou 215163, China
| | - Mingxuan Song
- Suzhou GK Medtech Science and Technology Development (Group) Co., Ltd., Suzhou 215163, China
| | - Chenyu Jiang
- Jinan Guoke Medical Technology Development Co., Ltd., Jinan 250100, China
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20
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Veillette JP, Lopes P, Nusbaum HC. Temporal Dynamics of Brain Activity Predicting Sense of Agency over Muscle Movements. J Neurosci 2023; 43:7842-7852. [PMID: 37722848 PMCID: PMC10648515 DOI: 10.1523/jneurosci.1116-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2023] [Revised: 08/07/2023] [Accepted: 09/04/2023] [Indexed: 09/20/2023] Open
Abstract
Our muscles are the primary means through which we affect the external world, and the sense of agency (SoA) over the action through those muscles is fundamental to our self-awareness. However, SoA research to date has focused almost exclusively on agency over action outcomes rather than over the musculature itself, as it was believed that SoA over the musculature could not be manipulated directly. Drawing on methods from human-computer interaction and adaptive experimentation, we use human-in-the-loop Bayesian optimization to tune the timing of electrical muscle stimulation so as to robustly elicit a SoA over electrically actuated muscle movements in male and female human subjects. We use time-resolved decoding of subjects' EEG to estimate the time course of neural activity which predicts reported agency on a trial-by-trial basis. Like paradigms which assess SoA over action consequences, we found that the late (post-conscious) neural activity predicts SoA. Unlike typical paradigms, however, we also find patterns of early (sensorimotor) activity with distinct temporal dynamics predicts agency over muscle movements, suggesting that the "neural correlates of agency" may depend on the level of abstraction (i.e., direct sensorimotor feedback versus downstream consequences) most relevant to a given agency judgment. Moreover, fractal analysis of the EEG suggests that SoA-contingent dynamics of neural activity may modulate the sensitivity of the motor system to external input.SIGNIFICANCE STATEMENT The sense of agency, the feeling of "I did that," when directing one's own musculature is a core feature of human experience. We show that we can robustly manipulate the sense of agency over electrically actuated muscle movements, and we investigate the time course of neural activity that predicts the sense of agency over these actuated movements. We find evidence of two distinct neural processes: a transient sequence of patterns that begins in the early sensorineural response to muscle stimulation and a later, sustained signature of agency. These results shed light on the neural mechanisms by which we experience our movements as volitional.
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Affiliation(s)
- John P Veillette
- Department of Psychology, University of Chicago, Chicago, Illinois 60637
| | - Pedro Lopes
- Department of Computer Science, University of Chicago, Chicago, Illinois 60637
| | - Howard C Nusbaum
- Department of Psychology, University of Chicago, Chicago, Illinois 60637
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21
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Pham MD, D’Angiulli A, Dehnavi MM, Chhabra R. From Brain Models to Robotic Embodied Cognition: How Does Biological Plausibility Inform Neuromorphic Systems? Brain Sci 2023; 13:1316. [PMID: 37759917 PMCID: PMC10526461 DOI: 10.3390/brainsci13091316] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 09/05/2023] [Accepted: 09/07/2023] [Indexed: 09/29/2023] Open
Abstract
We examine the challenging "marriage" between computational efficiency and biological plausibility-A crucial node in the domain of spiking neural networks at the intersection of neuroscience, artificial intelligence, and robotics. Through a transdisciplinary review, we retrace the historical and most recent constraining influences that these parallel fields have exerted on descriptive analysis of the brain, construction of predictive brain models, and ultimately, the embodiment of neural networks in an enacted robotic agent. We study models of Spiking Neural Networks (SNN) as the central means enabling autonomous and intelligent behaviors in biological systems. We then provide a critical comparison of the available hardware and software to emulate SNNs for investigating biological entities and their application on artificial systems. Neuromorphics is identified as a promising tool to embody SNNs in real physical systems and different neuromorphic chips are compared. The concepts required for describing SNNs are dissected and contextualized in the new no man's land between cognitive neuroscience and artificial intelligence. Although there are recent reviews on the application of neuromorphic computing in various modules of the guidance, navigation, and control of robotic systems, the focus of this paper is more on closing the cognition loop in SNN-embodied robotics. We argue that biologically viable spiking neuronal models used for electroencephalogram signals are excellent candidates for furthering our knowledge of the explainability of SNNs. We complete our survey by reviewing different robotic modules that can benefit from neuromorphic hardware, e.g., perception (with a focus on vision), localization, and cognition. We conclude that the tradeoff between symbolic computational power and biological plausibility of hardware can be best addressed by neuromorphics, whose presence in neurorobotics provides an accountable empirical testbench for investigating synthetic and natural embodied cognition. We argue this is where both theoretical and empirical future work should converge in multidisciplinary efforts involving neuroscience, artificial intelligence, and robotics.
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Affiliation(s)
- Martin Do Pham
- Department of Computer Science, University of Toronto, Toronto, ON M5S 1A1, Canada; (M.D.P.); (M.M.D.)
| | - Amedeo D’Angiulli
- Department of Neuroscience, Carleton University, Ottawa, ON K1S 5B6, Canada;
| | - Maryam Mehri Dehnavi
- Department of Computer Science, University of Toronto, Toronto, ON M5S 1A1, Canada; (M.D.P.); (M.M.D.)
| | - Robin Chhabra
- Department of Mechanical and Aerospace Engineering, Carleton University, Ottawa, ON K1S 5B6, Canada
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22
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Xing X, Huang R, Hao L, Jiang C, Dong WF. Temporal complexity in photoplethysmography and its influence on blood pressure. Front Physiol 2023; 14:1187561. [PMID: 37745247 PMCID: PMC10513039 DOI: 10.3389/fphys.2023.1187561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Accepted: 08/18/2023] [Indexed: 09/26/2023] Open
Abstract
Objective: The temporal complexity of photoplethysmography (PPG) provides valuable information about blood pressure (BP). In this study, we aim to interpret the stochastic PPG patterns with a model-based simulation, which may help optimize the BP estimation algorithms. Methods: The classic four-element Windkessel model is adapted in this study to incorporate BP-dependent compliance profiles. Simulations are performed to generate PPG responses to pulse and continuous stimuli at various timescales, aiming to mimic sudden or gradual hemodynamic changes observed in real-life scenarios. To quantify the temporal complexity of PPG, we utilize the Higuchi fractal dimension (HFD) and autocorrelation function (ACF). These measures provide insights into the intricate temporal patterns exhibited by PPG. To validate the simulation results, continuous recordings of BP, PPG, and stroke volume from 40 healthy subjects were used. Results: Pulse simulations showed that central vascular compliance variation during a cardiac cycle, peripheral resistance, and cardiac output (CO) collectively contributed to the time delay, amplitude overshoot, and phase shift of PPG responses. Continuous simulations showed that the PPG complexity could be generated by random stimuli, which were subsequently influenced by the autocorrelation patterns of the stimuli. Importantly, the relationship between complexity and hemodynamics as predicted by our model aligned well with the experimental analysis. HFD and ACF had significant contributions to BP, displaying stability even in the presence of high CO fluctuations. In contrast, morphological features exhibited reduced contribution in unstable hemodynamic conditions. Conclusion: Temporal complexity patterns are essential to single-site PPG-based BP estimation. Understanding the physiological implications of these patterns can aid in the development of algorithms with clear interpretability and optimal structures.
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Affiliation(s)
- Xiaoman Xing
- School of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China, Suzhou, China
- Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
| | - Rui Huang
- Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
- Academy for Engineering and Technology, Fudan University, Shanghai, China
| | - Liling Hao
- College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China
| | - Chenyu Jiang
- Jinan Guoke Medical Technology Development Co. Ltd., Jinan, China
| | - Wen-Fei Dong
- Suzhou Institute of Biomedical Engineering and Technology, Chinese Academy of Sciences, Suzhou, China
- Suzhou GK Medtech Science and Technology Development (Group) Co. Ltd., Suzhou, China
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23
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Liuzzi P, Hakiki B, Draghi F, Romoli AM, Burali R, Scarpino M, Cecchi F, Grippo A, Mannini A. EEG fractal dimensions predict high-level behavioral responses in minimally conscious patients. J Neural Eng 2023; 20:046038. [PMID: 37494926 DOI: 10.1088/1741-2552/aceaac] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 07/26/2023] [Indexed: 07/28/2023]
Abstract
Objective.Brain-injured patients may enter a state of minimal or inconsistent awareness termed minimally conscious state (MCS). Such patient may (MCS+) or may not (MCS-) exhibit high-level behavioral responses, and the two groups retain two inherently different rehabilitative paths and expected outcomes. We hypothesized that brain complexity may be treated as a proxy of high-level cognition and thus could be used as a neural correlate of consciousness.Approach.In this prospective observational study, 68 MCS patients (MCS-: 30; women: 31) were included (median [IQR] age 69 [20]; time post-onset 83 [28]). At admission to intensive rehabilitation, 30 min resting-state closed-eyes recordings were performed together with consciousness diagnosis following international guidelines. The width of the multifractal singularity spectrum (MSS) was computed for each channel time series and entered nested cross-validated interpretable machine learning models targeting the differential diagnosis of MCS±.Main results.Frontal MSS widths (p< 0.05), as well as the ones deriving from the left centro-temporal network (C3:p= 0.018, T3:p= 0.017; T5:p= 0.003) were found to be significantly higher in the MCS+ cohort. The best performing solution was found to be the K-nearest neighbor model with an aggregated test accuracy of 75.5% (median [IQR] AuROC for 100 executions 0.88 [0.02]). Coherently, the electrodes with highest Shapley values were found to be Fz and Cz, with four out the first five ranked features belonging to the fronto-central network.Significance.MCS+ is a frequent condition associated with a notably better prognosis than the MCS-. High fractality in the left centro-temporal network results coherent with neurological networks involved in the language function, proper of MCS+ patients. Using EEG-based interpretable algorithm to complement differential diagnosis of consciousness may improve rehabilitation pathways and communications with caregivers.
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Affiliation(s)
- Piergiuseppe Liuzzi
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
- The Biorobotics Institute, Scuola Superiore Sant'Anna Istituto di BioRobotica, Viale Rinaldo Piaggio 34, Pontedera, PI, Italy
| | - Bahia Hakiki
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Francesca Draghi
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Anna Maria Romoli
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Rachele Burali
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Maenia Scarpino
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Francesca Cecchi
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
- Department of Experimental and Clinical Medicine, University of Florence, Largo Brambilla 3, Florence, 50143 FI, Italy
| | - Antonello Grippo
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
| | - Andrea Mannini
- IRCCS Fondazione Don Carlo Gnocchi ONLUS, Via di Scandicci 269, Firenze, FI, Italy
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Ekizos A, Santuz A. "Biofeedback-based return to sport": individualization through objective assessments. Front Physiol 2023; 14:1185556. [PMID: 37378078 PMCID: PMC10291093 DOI: 10.3389/fphys.2023.1185556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 05/30/2023] [Indexed: 06/29/2023] Open
Abstract
Elite athletes are regularly exposed to high and repetitive mechanical stresses and impacts, resulting in high injury rates. The consequences of injury can range from time lost from training and competition to chronic physical and psychological burden, with no guarantee that the athlete will return to preinjury levels of sport activity and performance. Prominent predictors include load management and previous injury, highlighting the importance of the postinjury period for effective return to sport (RTS). Currently, there is conflicting information on how to choose and assess the best reentry strategy. Treating RTS as a continuum, with controlled progression of training load and complexity, seems to provide benefits in this process. Furthermore, objectivity has been identified as a critical factor in improving the effectiveness of RTS. We propose that assessments derived from biomechanical measurements in functional settings can provide the objectivity needed for regular biofeedback cycles. These cycles should aim to identify weaknesses, customize the load, and inform on the status of RTS progress. This approach emphasizes individualization as the primary determinant of RTS and provides a solid foundation for achieving it.
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Affiliation(s)
| | - Alessandro Santuz
- Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin, Germany
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25
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Walter N, Meinersen-Schmidt N, Kulla P, Loew T, Kruse J, Hinterberger T. Sensory-Processing Sensitivity Is Associated with Increased Neural Entropy. ENTROPY (BASEL, SWITZERLAND) 2023; 25:890. [PMID: 37372234 DOI: 10.3390/e25060890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 05/17/2023] [Accepted: 05/30/2023] [Indexed: 06/29/2023]
Abstract
BACKGROUND This study aimed at answering the following research questions: (1) Does the self-reported level of sensory-processing sensitivity (SPS) correlate with complexity, or criticality features of the electroencephalogram (EEG)? (2) Are there significant EEG differences comparing individuals with high and low levels of SPS? METHODS One hundred fifteen participants were measured with 64-channel EEG during a task-free resting state. The data were analyzed using criticality theory tools (detrended fluctuation analysis, neuronal avalanche analysis) and complexity measures (sample entropy, Higuchi's fractal dimension). Correlations with the 'Highly Sensitive Person Scale' (HSPS-G) scores were determined. Then, the cohort's lowest and the highest 30% were contrasted as opposites. EEG features were compared between the two groups by applying a Wilcoxon signed-rank test. RESULTS During resting with eyes open, HSPS-G scores correlated significantly positively with the sample entropy and Higuchi's fractal dimension (Spearman's ρ = 0.22, p < 0.05). The highly sensitive group revealed higher sample entropy values (1.83 ± 0.10 vs. 1.77 ± 0.13, p = 0.031). The increased sample entropy in the highly sensitive group was most pronounced in the central, temporal, and parietal regions. CONCLUSION For the first time, neurophysiological complexity features associated with SPS during a task-free resting state were demonstrated. Evidence is provided that neural processes differ between low- and highly-sensitive persons, whereby the latter displayed increased neural entropy. The findings support the central theoretical assumption of enhanced information processing and could be important for developing biomarkers for clinical diagnostics.
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Affiliation(s)
- Nike Walter
- Department of Psychosomatic Medicine, University Hospital Regensburg, 93059 Regensburg, Germany
| | - Nicole Meinersen-Schmidt
- Department for Clinical Psychology and Trauma Therapy, University of the Bundeswehr Munich, 85579 Neubiberg, Germany
| | - Patricia Kulla
- Department for Clinical Psychology and Trauma Therapy, University of the Bundeswehr Munich, 85579 Neubiberg, Germany
| | - Thomas Loew
- Department of Psychosomatic Medicine, University Hospital Regensburg, 93059 Regensburg, Germany
| | - Joachim Kruse
- Department for Clinical Psychology and Trauma Therapy, University of the Bundeswehr Munich, 85579 Neubiberg, Germany
| | - Thilo Hinterberger
- Department of Psychosomatic Medicine, University Hospital Regensburg, 93059 Regensburg, Germany
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26
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Poikonen H, Zaluska T, Wang X, Magno M, Kapur M. Nonlinear and machine learning analyses on high-density EEG data of math experts and novices. Sci Rep 2023; 13:8012. [PMID: 37198273 DOI: 10.1038/s41598-023-35032-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 05/11/2023] [Indexed: 05/19/2023] Open
Abstract
Current trend in neurosciences is to use naturalistic stimuli, such as cinema, class-room biology or video gaming, aiming to understand the brain functions during ecologically valid conditions. Naturalistic stimuli recruit complex and overlapping cognitive, emotional and sensory brain processes. Brain oscillations form underlying mechanisms for such processes, and further, these processes can be modified by expertise. Human cortical functions are often analyzed with linear methods despite brain as a biological system is highly nonlinear. This study applies a relatively robust nonlinear method, Higuchi fractal dimension (HFD), to classify cortical functions of math experts and novices when they solve long and complex math demonstrations in an EEG laboratory. Brain imaging data, which is collected over a long time span during naturalistic stimuli, enables the application of data-driven analyses. Therefore, we also explore the neural signature of math expertise with machine learning algorithms. There is a need for novel methodologies in analyzing naturalistic data because formulation of theories of the brain functions in the real world based on reductionist and simplified study designs is both challenging and questionable. Data-driven intelligent approaches may be helpful in developing and testing new theories on complex brain functions. Our results clarify the different neural signature, analyzed by HFD, of math experts and novices during complex math and suggest machine learning as a promising data-driven approach to understand the brain processes in expertise and mathematical cognition.
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Affiliation(s)
- Hanna Poikonen
- Learning Sciences and Higher Education, ETH Zurich, Clausiusstrasse 59 RZ J2, 8092, Zurich, Switzerland.
| | - Tomasz Zaluska
- Integrated Systems Laboratory, ETH Zurich, Zurich, Switzerland
| | - Xiaying Wang
- Integrated Systems Laboratory, ETH Zurich, Zurich, Switzerland
| | - Michele Magno
- Integrated Systems Laboratory, ETH Zurich, Zurich, Switzerland
| | - Manu Kapur
- Learning Sciences and Higher Education, ETH Zurich, Clausiusstrasse 59 RZ J2, 8092, Zurich, Switzerland
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27
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Majeed RR, Alkhafaji SKD. ECG classification system based on multi-domain features approach coupled with least square support vector machine (LS-SVM). Comput Methods Biomech Biomed Engin 2023; 26:540-547. [PMID: 35549774 DOI: 10.1080/10255842.2022.2072684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
Developing a robust authentication and identification method becomes an urgent demand to protect the integrity of devices data. Although the use of passwords provides an acceptable control and authentication, it has shown much weakness in terms of speed and integrity, which make biometrics the ideal authentication solution. As a result, electrocardiogram (ECG) signals have received a great attention in most authentication systems due to the individualized nature of the ECG signals that make them difficult to counterfeit and ubiquitous. In this paper, we propose a new model for ECG verification using multi-domain features coupled with a least square support vector machine (LS-SVM). Two types of features are investigated to find the best set of features to individual from ECG signals. Time domain and frequency domain features based on optimized Triple Band filter bank are extracted from ECG signals. The extracted features are investigated to figure out the best relevant features and remove the redundant ones. The selected features are fed to three classifiers, including Least Square Support Vector Machine (LS-SVM), K-means, and K-nearest. The obtained results have shown that our ECG biometric authentication system outperforms existing methods. The proposed model obtained an average of accuracy of 88%, 95% with time and frequency features, respectively, while it recorded 99% when a combination of time and frequency features are used to classify ECG signals. A public dataset is used to assess the proposed model.
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Affiliation(s)
- Russel R Majeed
- College of Education for Pure Sciences, University of Thi-Qar, Nasiriyah, Iraq
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28
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Fractal dimension based geographical clustering of COVID-19 time series data. Sci Rep 2023; 13:4322. [PMID: 36922616 PMCID: PMC10016183 DOI: 10.1038/s41598-023-30948-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 03/03/2023] [Indexed: 03/18/2023] Open
Abstract
Understanding the local dynamics of COVID-19 transmission calls for an approach that characterizes the incidence curve in a small geographical unit. Given that incidence curves exhibit considerable day-to-day variation, the fractal structure of the time series dynamics is investigated for the Flanders and Brussels Regions of Belgium. For each statistical sector, the smallest administrative geographical entity in Belgium, fractal dimensions of COVID-19 incidence rates, based on rolling time spans of 7, 14, and 21 days were estimated using four different estimators: box-count, Hall-Wood, variogram, and madogram. We found varying patterns of fractal dimensions across time and location. The fractal dimension is further summarized by its mean, variance, and autocorrelation over time. These summary statistics are then used to cluster regions with different incidence rate patterns using k-means clustering. Fractal dimension analysis of COVID-19 incidence thus offers important insight into the past, current, and arguably future evolution of an infectious disease outbreak.
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29
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Garehdaghi F, Sarbaz Y. Analyzing global features of magnetic resonance images in widespread neurodegenerative diseases: new hope to understand brain mechanism and robust neurodegenerative disease diagnosis. Med Biol Eng Comput 2023; 61:773-784. [PMID: 36596876 DOI: 10.1007/s11517-022-02748-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2022] [Accepted: 12/22/2022] [Indexed: 01/05/2023]
Abstract
Neurodegenerative diseases are caused by progressive degeneration of the central nervous system (CNS)'s neuronal structure. Well-known diseases in this category include Alzheimer's disease (AD), Parkinson's disease (PD), and multiple sclerosis (MS), which are also addressed in this study. The CNS appears to be a complex dynamic system, whose parameters change during the disease due to neuronal damage, resulting in various symptoms. Since the change in dynamic behavior is due to the neurons' death and change in neurons' connectivity, brain images of the affected areas appear to provide a good understanding of this change. This work attempts to focus on brain magnetic resonance images (MRI) and examine the effect of neuronal loss on the images. To this end, the complex features of these images, including 2D and Higuchi's fractal dimensions (HFD), correlation dimension (CD), largest Lyapunov exponent (LLE), and approximate entropy (ApEn) were calculated. Despite small differences in numerical values (0.01-0.35), these values differ significantly. This shows that the brain dynamic system behaves and functions differently in the disease state, which is clear in the behavior of global features. These three diseases have the same functional pattern, and this study seems to have captured the roots of these seemingly variant diseases.
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Affiliation(s)
- Farnaz Garehdaghi
- Modeling Biological System's Laboratory, Department of Biomedical Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, Tabriz, Iran
| | - Yashar Sarbaz
- Modeling Biological System's Laboratory, Department of Biomedical Engineering, Faculty of Electrical and Computer Engineering, University of Tabriz, Tabriz, Iran.
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30
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Puri DV, Nalbalwar SL, Nandgaonkar AB, Gawande JP, Wagh A. Automatic detection of Alzheimer’s disease from EEG signals using low-complexity orthogonal wavelet filter banks. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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31
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Lord B, Allen JJB. Evaluating EEG complexity metrics as biomarkers for depression. Psychophysiology 2023:e14274. [PMID: 36811526 DOI: 10.1111/psyp.14274] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 12/23/2022] [Accepted: 01/13/2023] [Indexed: 02/24/2023]
Abstract
Nonlinear EEG analysis offers the potential for both increased diagnostic accuracy and deeper mechanistic understanding of psychopathology. EEG complexity measures have previously been shown to positively correlate with clinical depression. In this study, resting state EEG recordings were taken across multiple sessions and days with both eyes open and eyes closed conditions from a total of 306 subjects, 62 of which were in a current depressive episode, and 81 of which had a history of diagnosed depression but were not currently depressed. Three different EEG montages (mastoids, average, and Laplacian) were also computed. Higuchi fractal dimension (HFD) and sample entropy (SampEn) were calculated for each unique condition. The complexity metrics showed high internal consistency within session and high stability across days. Higher complexity was found in open-eye recordings compared to closed eyes. The predicted correlation between complexity and depression was not found. However, an unexpected sex effect was observed, in which males and females exhibited different topographic patterns of complexity.
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Affiliation(s)
- Brian Lord
- Department of Psychology, University of Arizona, Tucson, Arizona, USA
| | - John J B Allen
- Department of Psychology, University of Arizona, Tucson, Arizona, USA
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32
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Santuz A, Akay T. Muscle spindles and their role in maintaining robust locomotion. J Physiol 2023; 601:275-285. [PMID: 36510697 PMCID: PMC10483674 DOI: 10.1113/jp282563] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 12/09/2022] [Indexed: 12/15/2022] Open
Abstract
Muscle spindles, one of the two main classes of proprioceptors together with Golgi tendon organs, are sensory structures that keep the central nervous system updated about the position and movement of body parts. Although they were discovered more than 150 years ago, their function during movement is not yet fully understood. Here, we summarize the morphology and known functions of muscle spindles, with a particular focus on locomotion. Although certain properties such as the sensitivity to dynamic and static muscle stretch are long known, recent advances in molecular biology have allowed the characterization of the molecular mechanisms for signal transduction in muscle spindles. Building upon classic literature showing that a lack of sensory feedback is deleterious to locomotion, we bring to the discussion more recent findings that support a pivotal role of muscle spindles in maintaining murine and human locomotor robustness, defined as the ability to cope with perturbations. Yet, more research is needed to expand the existing mechanistic understanding of how muscle spindles contribute to the production of robust, functional locomotion in real world settings. Future investigations should focus on combining different animal models to identify, in health and disease, those peripheral, spinal and brain proprioceptive structures involved in the fine tuning of motor control when locomotion happens in challenging conditions.
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Affiliation(s)
- Alessandro Santuz
- Atlantic Mobility Action Project, Brain Repair Centre, Department of Medical Neuroscience, Life Sciences Research Institute, Dalhousie University, Halifax, NS, Canada
| | - Turgay Akay
- Atlantic Mobility Action Project, Brain Repair Centre, Department of Medical Neuroscience, Life Sciences Research Institute, Dalhousie University, Halifax, NS, Canada
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33
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Evaluation of handcrafted features and learned representations for the classification of arrhythmia and congestive heart failure in ECG. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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34
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Diaz-Martinez A, Monfort-Ortiz R, Ye-Lin Y, Garcia-Casado J, Nieto-Tous M, Nieto-Del-Amor F, Diago-Almela V, Prats-Boluda G. Uterine myoelectrical activity as biomarker of successful induction with Dinoprostone: Influence of parity. Biocybern Biomed Eng 2023. [DOI: 10.1016/j.bbe.2022.12.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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35
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Santuz A, Laflamme OD, Akay T. The brain integrates proprioceptive information to ensure robust locomotion. J Physiol 2022; 600:5267-5294. [PMID: 36271747 DOI: 10.1113/jp283181] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 10/10/2022] [Indexed: 01/05/2023] Open
Abstract
Robust locomotion relies on information from proprioceptors: sensory organs that communicate the position of body parts to the spinal cord and brain. Proprioceptive circuits in the spinal cord are known to coarsely regulate locomotion in the presence of perturbations. Yet, the regulatory importance of the brain in maintaining robust locomotion remains less clear. Here, through mouse genetic studies and in vivo electrophysiology, we examined the role of the brain in integrating proprioceptive information during perturbed locomotion. The systemic removal of proprioceptors left the mice in a constantly perturbed state, similar to that observed during mechanically perturbed locomotion in wild-type mice and characterised by longer and less accurate synergistic activation patterns. By contrast, after surgically interrupting the ascending proprioceptive projection to the brain through the dorsal column of the spinal cord, wild-type mice showed normal walking behaviour, yet lost the ability to respond to external perturbations. Our findings provide direct evidence of a pivotal role for ascending proprioceptive information in achieving robust, safe locomotion. KEY POINTS: Whether brain integration of proprioceptive feedback is crucial for coping with perturbed locomotion is not clear. We showed a crucial role of the brain for responding to external perturbations and ensure robust locomotion. We used mouse genetics to remove proprioceptors and a spinal lesion model to interrupt the flow of proprioceptive information to the brain through the dorsal column in wild-type animals. Using a custom-built treadmill, we administered sudden and random mechanical perturbations to mice during walking. External perturbations affected locomotion in wild-type mice similar to the absence of proprioceptors in genetically modified mice. Proprioceptive feedback from muscle spindles and Golgi tendon organs contributed to locomotor robustness. Wild-type mice lost the ability to respond to external perturbations after interruption of the ascending proprioceptive projection to the brainstem.
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Affiliation(s)
- Alessandro Santuz
- Atlantic Mobility Action Project, Brain Repair Centre, Department of Medical Neuroscience, Dalhousie University, Halifax, NS, Canada
| | - Olivier D Laflamme
- Atlantic Mobility Action Project, Brain Repair Centre, Department of Medical Neuroscience, Dalhousie University, Halifax, NS, Canada
| | - Turgay Akay
- Atlantic Mobility Action Project, Brain Repair Centre, Department of Medical Neuroscience, Dalhousie University, Halifax, NS, Canada
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36
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Bendrich N, Kumar P, Scheme E. Feature Selection for Continuous within- and Cross-User EEG-Based Emotion Recognition. SENSORS (BASEL, SWITZERLAND) 2022; 22:9282. [PMID: 36501983 PMCID: PMC9737269 DOI: 10.3390/s22239282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 11/21/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
The monitoring of emotional state is important in the prevention and management of mental health problems and is increasingly being used to support affective computing. As such, researchers are exploring various modalities from which emotion can be inferred, such as through facial images or via electroencephalography (EEG) signals. Current research commonly investigates the performance of machine-learning-based emotion recognition systems by exposing users to stimuli that are assumed to elicit a single unchanging emotional response. Moreover, in order to demonstrate better results, many models are tested in evaluation frameworks that do not reflect realistic real-world implementations. Consequently, in this paper, we explore the design of EEG-based emotion recognition systems using longer, variable stimuli using the publicly available AMIGOS dataset. Feature engineering and selection results are evaluated across four different cross-validation frameworks, including versions of leave-one-movie-out (testing with a known user, but a previously unseen movie), leave-one-person-out (testing with a known movie, but a previously unseen person), and leave-one-person-and-movie-out (testing on both a new user and new movie). Results of feature selection lead to a 13% absolute improvement over comparable previously reported studies, and demonstrate the importance of evaluation framework on the design and performance of EEG-based emotion recognition systems.
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37
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Armonaite K, Conti L, Tecchio F. Book review: The fractal geometry of the brain. Front Neurosci 2022. [DOI: 10.3389/fnins.2022.1078376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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38
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Jan D, de Vega M, López-Pigüi J, Padrón I. Applying Deep Learning on a Few EEG Electrodes during Resting State Reveals Depressive States. A Data Driven Study. Brain Sci 2022; 12:1506. [PMID: 36358432 PMCID: PMC9688627 DOI: 10.3390/brainsci12111506] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Revised: 10/27/2022] [Accepted: 11/04/2022] [Indexed: 01/10/2024] Open
Abstract
The growing number of depressive people and the overload in primary care services make it necessary to identify depressive states with easily accessible biomarkers such as mobile electroencephalography (EEG). Some studies have addressed this issue by collecting and analyzing EEG resting state in a search of appropriate features and classification methods. Traditionally, EEG resting state classification methods for depression were mainly based on linear or a combination of linear and non-linear features. We hypothesize that participants with ongoing depressive states differ from controls in complex patterns of brain dynamics that can be captured in EEG resting state data, using only nonlinear measures on a few electrodes, making it possible to develop cheap and wearable devices that could be even monitored through smartphones. To validate such a perspective, a resting-state EEG study was conducted with 50 participants, half with depressive state (DEP) and half controls (CTL). A data-driven approach was applied to select the most appropriate time window and electrodes for the EEG analyses, as suggested by Giacometti, as well as the most efficient nonlinear features and classifiers, to distinguish between CTL and DEP participants. Nonlinear features showing temporo-spatial and spectral complexity were selected. The results confirmed that computing nonlinear features from a few selected electrodes in a 15 s time window are sufficient to classify DEP and CTL participants accurately. Finally, after training and testing internally the classifier, the trained machine was applied to EEG resting state data (CTL and DEP) from a publicly available database, validating the capacity of generalization of the classifier with data from different equipment, population, and environment obtaining an accuracy near 100%.
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Affiliation(s)
- Damián Jan
- Instituto Universitario de Neurociencia, Universidad de La Laguna, 38200 La Laguna, Santa Cruz de Tenerife, Spain
| | - Manuel de Vega
- Instituto Universitario de Neurociencia, Universidad de La Laguna, 38200 La Laguna, Santa Cruz de Tenerife, Spain
| | - Joana López-Pigüi
- Instituto Universitario de Neurociencia, Universidad de La Laguna, 38200 La Laguna, Santa Cruz de Tenerife, Spain
- Department of Psychology, Faculty of Health Sciences, University of Hull, Kingston upon Hull HU6 7RX, UK
| | - Iván Padrón
- Instituto Universitario de Neurociencia, Universidad de La Laguna, 38200 La Laguna, Santa Cruz de Tenerife, Spain
- Departamento de Psicología Evolutiva y de la Educación, Campus de Guajara, Universidad de La Laguna, Apartado 456, 38200 La Laguna, Santa Cruz de Tenerife, Spain
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Zlatintsi A, Filntisis PP, Garoufis C, Efthymiou N, Maragos P, Menychtas A, Maglogiannis I, Tsanakas P, Sounapoglou T, Kalisperakis E, Karantinos T, Lazaridi M, Garyfalli V, Mantas A, Mantonakis L, Smyrnis N. E-Prevention: Advanced Support System for Monitoring and Relapse Prevention in Patients with Psychotic Disorders Analyzing Long-Term Multimodal Data from Wearables and Video Captures. SENSORS (BASEL, SWITZERLAND) 2022; 22:7544. [PMID: 36236643 PMCID: PMC9572170 DOI: 10.3390/s22197544] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 09/23/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
Wearable technologies and digital phenotyping foster unique opportunities for designing novel intelligent electronic services that can address various well-being issues in patients with mental disorders (i.e., schizophrenia and bipolar disorder), thus having the potential to revolutionize psychiatry and its clinical practice. In this paper, we present e-Prevention, an innovative integrated system for medical support that facilitates effective monitoring and relapse prevention in patients with mental disorders. The technologies offered through e-Prevention include: (i) long-term continuous recording of biometric and behavioral indices through a smartwatch; (ii) video recordings of patients while being interviewed by a clinician, using a tablet; (iii) automatic and systematic storage of these data in a dedicated Cloud server and; (iv) the ability of relapse detection and prediction. This paper focuses on the description of the e-Prevention system and the methodologies developed for the identification of feature representations that correlate with and can predict psychopathology and relapses in patients with mental disorders. Specifically, we tackle the problem of relapse detection and prediction using Machine and Deep Learning techniques on all collected data. The results are promising, indicating that such predictions could be made and leading eventually to the prediction of psychopathology and the prevention of relapses.
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Affiliation(s)
- Athanasia Zlatintsi
- School of ECE, National Technical University of Athens, 157 73 Athens, Greece
| | | | - Christos Garoufis
- School of ECE, National Technical University of Athens, 157 73 Athens, Greece
| | - Niki Efthymiou
- School of ECE, National Technical University of Athens, 157 73 Athens, Greece
| | - Petros Maragos
- School of ECE, National Technical University of Athens, 157 73 Athens, Greece
| | - Andreas Menychtas
- Department of Digital Systems, University of Piraeus, 185 34 Pireas, Greece
| | - Ilias Maglogiannis
- Department of Digital Systems, University of Piraeus, 185 34 Pireas, Greece
| | - Panayiotis Tsanakas
- School of ECE, National Technical University of Athens, 157 73 Athens, Greece
| | | | - Emmanouil Kalisperakis
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
- 1st Department of Psychiatry, Eginition Hospital, Medical School, National and Kapodistrian University of Athens, 115 28 Athens, Greece
| | - Thomas Karantinos
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
| | - Marina Lazaridi
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
- 1st Department of Psychiatry, Eginition Hospital, Medical School, National and Kapodistrian University of Athens, 115 28 Athens, Greece
| | - Vasiliki Garyfalli
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
- 1st Department of Psychiatry, Eginition Hospital, Medical School, National and Kapodistrian University of Athens, 115 28 Athens, Greece
| | - Asimakis Mantas
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
| | - Leonidas Mantonakis
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
- 1st Department of Psychiatry, Eginition Hospital, Medical School, National and Kapodistrian University of Athens, 115 28 Athens, Greece
| | - Nikolaos Smyrnis
- Laboratory of Cognitive Neuroscience and Sensorimotor Control, University Mental Health, Neurosciences and Precision Medicine Research Institute “COSTAS STEFANIS”, 115 27 Athens, Greece
- 2nd Department of Psychiatry, University General Hospital “ATTIKON”, Medical School, National and Kapodistrian University of Athens, 124 62 Athens, Greece
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Peptenatu D, Andronache I, Ahammer H, Taylor R, Liritzis I, Radulovic M, Ciobanu B, Burcea M, Perc M, Pham TD, Tomić BM, Cîrstea CI, Lemeni AN, Gruia AK, Grecu A, Marin M, Jelinek HF. Kolmogorov compression complexity may differentiate different schools of Orthodox iconography. Sci Rep 2022; 12:10743. [PMID: 35750777 PMCID: PMC9232591 DOI: 10.1038/s41598-022-12826-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 05/16/2022] [Indexed: 11/12/2022] Open
Abstract
The complexity in the styles of 1200 Byzantine icons painted between 13th and 16th from Greece, Russia and Romania was investigated through the Kolmogorov algorithmic information theory. The aim was to identify specific quantitative patterns which define the key characteristics of the three different painting schools. Our novel approach using the artificial surface images generated with Inverse FFT and the Midpoint Displacement (MD) algorithms, was validated by comparison of results with eight fractal and non-fractal indices. From the analyzes performed, normalized Kolmogorov compression complexity (KC) proved to be the best solution because it had the best complexity pattern differentiations, is not sensitive to the image size and the least affected by noise. We conclude that normalized KC methodology does offer capability to differentiate the icons within a School and amongst the three Schools.
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Affiliation(s)
- Daniel Peptenatu
- Research Center for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
| | - Ion Andronache
- Research Center for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania.
| | - Helmut Ahammer
- GSRC, Division of Biophysics, Medical University of Graz, 8010, Graz, Austria
| | - Richard Taylor
- Physics Department, University of Oregon, Eugene, OR, 97403, USA
| | - Ioannis Liritzis
- Key Research Institute of Yellow River Civilization and Sustainable Development and Collaborative Center On Yellow River Civilization, Laboratory of Yellow River Cultural Heritage, Henan University, Minglun Road 85, 475001, Kaifeng, Henan, China
| | - Marko Radulovic
- Department of Experimental Oncology, Institute of Oncology and Radiology of Serbia, Pasterova 14, 11000, Belgrade, Serbia
| | - Bogdan Ciobanu
- Mural Art Department, Faculty of Decorative Arts and Design, Bucharest National University of Arts, General Constantin Budisteanu 19, 010773, Bucharest, Romania
- Union of Visual Artists in Romania, Băiculești 29, 013193, Bucharest, Romania
| | - Marin Burcea
- Faculty of Administration and Business, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
| | - Matjaz Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, 2000, Maribor, Slovenia
- Department of Medical Research, China Medical University Hospital, China Medical University, Taichung, 404332, Taiwan
- Alma Mater Europaea, Slovenska ulica 17, 2000, Maribor, Slovenia
- Complexity Science Hub Vienna, Josefstädterstraße 39, 1080, Vienna, Austria
| | - Tuan D Pham
- Center for Artificial Intelligence, Prince Mohammad Bin Fahd University, Khobar, 31952, Saudi Arabia
| | - Bojan M Tomić
- Institute for Multidisciplinary Research, University of Belgrade, 1 Kneza Višeslava st., 11030, Belgrade, Serbia
| | - Cosmin Iulian Cîrstea
- "Dumitru Stăniloae" Doctoral School, Faculty of Orthodox Theology, University of Bucharest, Sf. Ecaterina 2, 040155, Bucharest, Romania
| | - Adrian Nicolae Lemeni
- "Dumitru Stăniloae" Doctoral School, Faculty of Orthodox Theology, University of Bucharest, Sf. Ecaterina 2, 040155, Bucharest, Romania
| | - Andreea Karina Gruia
- Research Center for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
- Faculty of Administration and Business, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
| | - Alexandra Grecu
- Research Center for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
- Faculty of Administration and Business, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
| | - Marian Marin
- Research Center for Integrated Analysis and Territorial Management, Faculty of Geography, University of Bucharest, 4-12 Regina Elisabeta Boulevard, 030018, Bucharest, Romania
| | - Herbert Franz Jelinek
- Department of Biomedical Engineering and Health Engineering Innovation Center, Khalifa University, 127788, Abu Dhabi, United Arab Emirates
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Tok S, Maurin H, Delay C, Crauwels D, Manyakov NV, Van Der Elst W, Moechars D, Drinkenburg WHIM. Pathological and neurophysiological outcomes of seeding human-derived tau pathology in the APP-KI NL-G-F and NL-NL mouse models of Alzheimer's Disease. Acta Neuropathol Commun 2022; 10:92. [PMID: 35739575 PMCID: PMC9219251 DOI: 10.1186/s40478-022-01393-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 06/07/2022] [Indexed: 12/02/2022] Open
Abstract
The two main histopathological hallmarks that characterize Alzheimer’s Disease are the presence of amyloid plaques and neurofibrillary tangles. One of the current approaches to studying the consequences of amyloid pathology relies on the usage of transgenic animal models that incorporate the mutant humanized form of the amyloid precursor protein (hAPP), with animal models progressively developing amyloid pathology as they age. However, these mice models generally overexpress the hAPP protein to facilitate the development of amyloid pathology, which has been suggested to elicit pathological and neuropathological changes unrelated to amyloid pathology. In this current study, we characterized APP knock-in (APP-KI) animals, that do not overexpress hAPP but still develop amyloid pathology to understand the influence of protein overexpression. We also induced tau pathology via human-derived tau seeding material to understand the neurophysiological effects of amyloid and tau pathology. We report that tau-seeded APP-KI animals progressively develop tau pathology, exacerbated by the presence of amyloid pathology. Interestingly, older amyloid-bearing, tau-seeded animals exhibited more amyloid pathology in the entorhinal area, isocortex and hippocampus, but not thalamus, which appeared to correlate with impairments in gamma oscillations before seeding. Tau-seeded animals also featured immediate deficits in power spectra values and phase-amplitude indices in the hippocampus after seeding, with gamma power spectra deficits persisting in younger animals. Both deficits in hippocampal phase-amplitude coupling and gamma power differentiate tau-seeded, amyloid-positive animals from buffer controls. Based on our results, impairments in gamma oscillations appear to be strongly associated with the presence and development of amyloid and tau pathology, and may also be an indicator of neuropathology, network dysfunction, and even potential disposition to the future development of amyloid pathology.
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Affiliation(s)
- S Tok
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium.,Groningen Institute for Evolutionary Life Sciences, Faculty of Science and Engineering, University of Groningen, Groningen, The Netherlands
| | - H Maurin
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - C Delay
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - D Crauwels
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - N V Manyakov
- Data Sciences, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - W Van Der Elst
- Quantitative Sciences Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - D Moechars
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - W H I M Drinkenburg
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium. .,Groningen Institute for Evolutionary Life Sciences, Faculty of Science and Engineering, University of Groningen, Groningen, The Netherlands.
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42
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Walter N, Hinterberger T. Determining states of consciousness in the electroencephalogram based on spectral, complexity, and criticality features. Neurosci Conscious 2022; 2022:niac008. [PMID: 35903410 PMCID: PMC9319002 DOI: 10.1093/nc/niac008] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 04/19/2022] [Accepted: 04/26/2022] [Indexed: 11/25/2022] Open
Abstract
This study was based on the contemporary proposal that distinct states of consciousness are quantifiable by neural complexity and critical dynamics. To test this hypothesis, it was aimed at comparing the electrophysiological correlates of three meditation conditions using nonlinear techniques from the complexity and criticality framework as well as power spectral density. Thirty participants highly proficient in meditation were measured with 64-channel electroencephalography (EEG) during one session consisting of a task-free baseline resting (eyes closed and eyes open), a reading condition, and three meditation conditions (thoughtless emptiness, presence monitoring, and focused attention). The data were analyzed applying analytical tools from criticality theory (detrended fluctuation analysis, neuronal avalanche analysis), complexity measures (multiscale entropy, Higuchi's fractal dimension), and power spectral density. Task conditions were contrasted, and effect sizes were compared. Partial least square regression and receiver operating characteristics analysis were applied to determine the discrimination accuracy of each measure. Compared to resting with eyes closed, the meditation categories emptiness and focused attention showed higher values of entropy and fractal dimension. Long-range temporal correlations were declined in all meditation conditions. The critical exponent yielded the lowest values for focused attention and reading. The highest discrimination accuracy was found for the gamma band (0.83-0.98), the global power spectral density (0.78-0.96), and the sample entropy (0.86-0.90). Electrophysiological correlates of distinct meditation states were identified and the relationship between nonlinear complexity, critical brain dynamics, and spectral features was determined. The meditation states could be discriminated with nonlinear measures and quantified by the degree of neuronal complexity, long-range temporal correlations, and power law distributions in neuronal avalanches.
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Affiliation(s)
- Nike Walter
- Department of Psychosomatic Medicine, Section of
Applied Consciousness Sciences, University Hospital of Regensburg,
Franz-Josef-Strauß Allee 11, Regensburg 93059, Germany
| | - Thilo Hinterberger
- Department of Psychosomatic Medicine, Section of
Applied Consciousness Sciences, University Hospital of Regensburg,
Franz-Josef-Strauß Allee 11, Regensburg 93059, Germany
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43
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Santuz A, Janshen L, Brüll L, Munoz-Martel V, Taborri J, Rossi S, Arampatzis A. Sex-specific tuning of modular muscle activation patterns for locomotion in young and older adults. PLoS One 2022; 17:e0269417. [PMID: 35658057 PMCID: PMC9165881 DOI: 10.1371/journal.pone.0269417] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 03/22/2022] [Indexed: 12/26/2022] Open
Abstract
There is increasing evidence that including sex as a biological variable is of crucial importance to promote rigorous, repeatable and reproducible science. In spite of this, the body of literature that accounts for the sex of participants in human locomotion studies is small and often produces controversial results. Here, we investigated the modular organization of muscle activation patterns for human locomotion using the concept of muscle synergies with a double purpose: i) uncover possible sex-specific characteristics of motor control and ii) assess whether these are maintained in older age. We recorded electromyographic activities from 13 ipsilateral muscles of the lower limb in young and older adults of both sexes walking (young and old) and running (young) on a treadmill. The data set obtained from the 215 participants was elaborated through non-negative matrix factorization to extract the time-independent (i.e., motor modules) and time-dependent (i.e., motor primitives) coefficients of muscle synergies. We found sparse sex-specific modulations of motor control. Motor modules showed a different contribution of hip extensors, knee extensors and foot dorsiflexors in various synergies. Motor primitives were wider (i.e., lasted longer) in males in the propulsion synergy for walking (but only in young and not in older adults) and in the weight acceptance synergy for running. Moreover, the complexity of motor primitives was similar in younger adults of both sexes, but lower in older females as compared to older males. In essence, our results revealed the existence of small but defined sex-specific differences in the way humans control locomotion and that these are not entirely maintained in older age.
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Affiliation(s)
- Alessandro Santuz
- Department of Training and Movement Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Berlin School of Movement Science, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Lars Janshen
- Department of Training and Movement Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Berlin School of Movement Science, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Leon Brüll
- Department of Training and Movement Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Berlin School of Movement Science, Humboldt-Universität zu Berlin, Berlin, Germany
- Network Aging Research, Heidelberg University, Heidelberg, Germany
| | - Victor Munoz-Martel
- Department of Training and Movement Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Berlin School of Movement Science, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Juri Taborri
- Department of Economics, Engineering, Society and Business Organization, University of Tuscia, Viterbo, Italy
| | - Stefano Rossi
- Department of Economics, Engineering, Society and Business Organization, University of Tuscia, Viterbo, Italy
| | - Adamantios Arampatzis
- Department of Training and Movement Sciences, Humboldt-Universität zu Berlin, Berlin, Germany
- Berlin School of Movement Science, Humboldt-Universität zu Berlin, Berlin, Germany
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44
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Tok S, Maurin H, Delay C, Crauwels D, Manyakov NV, Van Der Elst W, Moechars D, Drinkenburg WHIM. Neurophysiological effects of human-derived pathological tau conformers in the APPKM670/671NL.PS1/L166P amyloid mouse model of Alzheimer's disease. Sci Rep 2022; 12:7784. [PMID: 35546164 PMCID: PMC9094605 DOI: 10.1038/s41598-022-11582-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Accepted: 04/19/2022] [Indexed: 11/09/2022] Open
Abstract
Alzheimer’s Disease (AD) is a neurodegenerative disease characterized by two main pathological hallmarks: amyloid plaques and intracellular tau neurofibrillary tangles. However, a majority of studies focus on the individual pathologies and seldom on the interaction between the two pathologies. Herein, we present the longitudinal neuropathological and neurophysiological effects of a combined amyloid-tau model by hippocampal seeding of human-derived tau pathology in the APP.PS1/L166P amyloid animal model. We statistically assessed both neurophysiological and pathological changes using linear mixed modelling to determine if factors such as the age at which animals were seeded, genotype, seeding or buffer, brain region where pathology was quantified, and time-post injection differentially affect these outcomes. We report that AT8-positive tau pathology progressively develops and is facilitated by the amount of amyloid pathology present at the time of injection. The amount of AT8-positive tau pathology was influenced by the interaction of age at which the animal was injected, genotype, and time after injection. Baseline pathology-related power spectra and Higuchi Fractal Dimension (HFD) score alterations were noted in APP.PS1/L166P before any manipulations were performed, indicating a baseline difference associated with genotype. We also report immediate localized hippocampal dysfunction in the electroencephalography (EEG) power spectra associated with tau seeding which returned to comparable levels at 1 month-post-injection. Longitudinal effects of seeding indicated that tau-seeded wild-type mice showed an increase in gamma power earlier than buffer control comparisons which was influenced by the age at which the animal was injected. A reduction of hippocampal broadband power spectra was noted in tau-seeded wild-type mice, but absent in APP.PS1 animals. HFD scores appeared to detect subtle effects associated with tau seeding in APP.PS1 animals, which was differentially influenced by genotype. Notably, while tau histopathological changes were present, a lack of overt longitudinal electrophysiological alterations was noted, particularly in APP.PS1 animals that feature both pathologies after seeding, reiterating and underscoring the difficulty and complexity associated with elucidating physiologically relevant and translatable biomarkers of Alzheimer’s Disease at the early stages of the disease.
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Affiliation(s)
- S Tok
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium. .,Faculty of Science and Engineering, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands.
| | - H Maurin
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - C Delay
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - D Crauwels
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - N V Manyakov
- Data Sciences, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - W Van Der Elst
- Quantitative Sciences Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - D Moechars
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium
| | - W H I M Drinkenburg
- Department of Neuroscience, Janssen Research and Development, Janssen Pharmaceutica NV, Turnhoutseweg 30, 2340, Beerse, Belgium.,Faculty of Science and Engineering, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands
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Khan A, Chen C, Eden CH, Yuan K, Tse CY, Lou W, Tong KY. Impact of Anodal High-Definition Transcranial Direct Current Stimulation of Medial Prefrontal Cortex on Stroop Task performance and its electrophysiological correlates. A pilot study. Neurosci Res 2022; 181:46-54. [DOI: 10.1016/j.neures.2022.03.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 03/09/2022] [Accepted: 03/17/2022] [Indexed: 11/26/2022]
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Roughness Scaling Extraction Accelerated by Dichotomy-Binary Strategy and Its Application to Milling Vibration Signal. MATHEMATICS 2022. [DOI: 10.3390/math10071105] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Fractal algorithms for signal analysis are developed from geometric fractals and can be used to describe various complex signals in nature. A roughness scaling extraction algorithm with first-order flattening (RSE-f1) was shown in our previous studies to have a high accuracy, strong noise resistance, and a unique capacity to recognize the complexity of non-fractals that are common in signals. In this study, its disadvantage of a long calculation duration was addressed by using a dichotomy-binary strategy. The accelerated RSE-f1 algorithm (A-RSE-f1) retains the three above-mentioned advantages of the original algorithm according to theoretical analysis and artificial signal testing, while its calculation speed is significantly accelerated by 13 fold, which also makes it faster than the typical Higuchi algorithm. Afterwards, the vibration signals of the milling process are analyzed using the A-RSE-f1 algorithm, demonstrating the ability to distinguish different machining statuses (idle, stable, and chatter) effectively. The results of this study demonstrate that the RSE algorithm has been improved to meet the requirements of practical engineering with both a fast speed and a high performance.
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Toward a More General Understanding of Bohr's Complementarity: Insights from Modeling of Ion Channels. Acta Biotheor 2021; 69:723-744. [PMID: 34585309 DOI: 10.1007/s10441-021-09424-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 08/02/2021] [Indexed: 10/20/2022]
Abstract
Some contemporary theorists such as Mazzocchi, Theise and Kafatos are convinced that the reformed complementarity may redefine how we might exploit the complexity theory in 21st-century life sciences research. However, the motives behind the profound re-invention of "biological complementarity" need to be substantiated with concrete shreds of evidence about this principle's applicability in real-life science experimentation, which we found missing in the literature. This paper discusses such pieces of evidence by confronting Bohr's complementarity and ion channel modeling practice. We examine whether and to what extent this principle might assist in developing ion channel models incorporating both deterministic and stochastic solutions. According to the "mutual exclusiveness of experimental setups" version of Bohr's complementarity, this principle is needed when two mutually exclusive perspectives or approaches are right, necessary in a particular context, and are not contradictory as they arise in mutually exclusive conditions (mutually exclusive experimental or modeling setups). A detailed examination of the modeling practice reveals that both solutions are often used simultaneously in a single ion channel model, suggesting that the opposite conceptual frameworks can coexist in the same modeling setup. We concluded that Bohr's complementarity might find applications in these complex modeling setups but only through its realistic phenomenological interpretation that allows applying different modes of description regardless of the nature of the underlying ion channel opening process. Also, we propose the combined use of complementarity and Complex thinking in building the multifaceted ion channel models. Overall, this paper's results support the efforts to establish a more general form of complementarity to meet today's complexity theory-inspired life sciences modeling demands.
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Di Marco R, Rubega M, Antonini A, Formaggio E, Masiero S, Del Felice A. Fractal Analysis of Lower Back Acceleration Profiles in balance tasks. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2021; 2021:7381-7384. [PMID: 34892803 DOI: 10.1109/embc46164.2021.9629870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The body sway during standing displays fractal properties that can possibly describe motion complexity. This study aimed to use the Higuchi's fractal dimension (HFD) and Tortuosity on lower back accelerations recorded on younger (< 35 y) and older adults (> 64 y). One wearable sensor was secured on participants lower back (i.e., fifth lumbar vertebra), which were asked to perform three different postural tasks while standing barefoot as still as possible with and without performing a visual oddball task. Results of HFD and Tortuosity, applied to global anterior-posterior and medial-lateral accelerations of the body, were not dependent from signal amplitude, nor from any parametrization and allowed distinguishing between different postural tasks (p < 0.001). The proposed fractal analysis is promising to describe the complexity of postural control in both younger and older adults, paving the way to a wider use in pathological populations.
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Abstract
Epileptic diseases take EEG as an important basis for clinical judgment, and fractal algorithms were often used to analyze electroencephalography (EEG) signals. However, the variation trends of fractal dimension (D) were opposite in the literature, i.e., both D decreasing and increasing were reported in previous studies during seizure status relative to the normal status, undermining the feasibility of fractal algorithms for EEG analysis to detect epileptic seizures. In this study, two algorithms with high accuracy in the D calculation, Higuchi and roughness scaling extraction (RSE), were used to study D variation of EEG signals with seizures. It was found that the denoising operation had an important influence on D variation trend. Moreover, the D variation obtained by RSE algorithm was larger than that by Higuchi algorithm, because the non-fractal nature of EEG signals during normal status could be detected and quantified by RSE algorithm. The above findings in this study could be promising to make more understandings of the nonlinear nature and scaling behaviors of EEG signals.
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A New Fractional-Order Chaotic System with Its Analysis, Synchronization, and Circuit Realization for Secure Communication Applications. MATHEMATICS 2021. [DOI: 10.3390/math9202593] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
This article presents a novel four-dimensional autonomous fractional-order chaotic system (FOCS) with multi-nonlinearity terms. Several dynamics, such as the chaotic attractors, equilibrium points, fractal dimension, Lyapunov exponent, and bifurcation diagrams of this new FOCS, are studied analytically and numerically. Adaptive control laws are derived based on Lyapunov theory to achieve chaos synchronization between two identical new FOCSs with an uncertain parameter. For these two identical FOCSs, one represents the master and the other is the slave. The uncertain parameter in the slave side was estimated corresponding to the equivalent master parameter. Next, this FOCS and its synchronization were realized by a feasible electronic circuit and tested using Multisim software. In addition, a microcontroller (Arduino Due) was used to implement the suggested system and the developed synchronization technique to demonstrate its digital applicability in real-world applications. Furthermore, based on the developed synchronization mechanism, a secure communication scheme was constructed. Finally, the security analysis metric tests were investigated through histograms and spectrograms analysis to confirm the security strength of the employed communication system. Numerical simulations demonstrate the validity and possibility of using this new FOCS in high-level security communication systems. Furthermore, the secure communication system is highly resistant to pirate attacks. A good agreement between simulation and experimental results is obtained, showing that the new FOCS can be used in real-world applications.
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