Computer-aided diagnosis system for the classification of multi-class kidney abnormalities in the noisy ultrasound images

URI-CADS: A Fully Automated Computer-Aided Diagnosis System for Ultrasound Renal Imaging

Ultrasound is a widespread imaging modality, with special application in medical fields such as nephrology. However, automated approaches for ultrasound renal interpretation still pose some challenges: (1) the need for manual supervision by experts at various stages of the system, which prevents its adoption in primary healthcare, and (2) their limited considered taxonomy (e.g., reduced number of pathologies), which makes them unsuitable for training practitioners and providing support to experts. This paper proposes a fully automated computer-aided diagnosis system for ultrasound renal imaging addressing both of these challenges. Our system is based in a multi-task architecture, which is implemented by a three-branched convolutional neural network and is capable of segmenting the kidney and detecting global and local pathologies with no need of human interaction during diagnosis. The integration of different image perspectives at distinct granularities enhanced the proposed diagnosis. We employ a large (1985 images) and demanding ultrasound renal imaging database, publicly released with the system and annotated on the basis of an exhaustive taxonomy of two global and nine local pathologies (including cysts, lithiasis, hydronephrosis, angiomyolipoma), establishing a benchmark for ultrasound renal interpretation. Experiments show that our proposed method outperforms several state-of-the-art methods in both segmentation and diagnosis tasks and leverages the combination of global and local image information to improve the diagnosis. Our results, with a 87.41% of AUC in healthy-pathological diagnosis and 81.90% in multi-pathological diagnosis, support the use of our system as a helpful tool in the healthcare system.

AdaRes: A deep learning-based model for ultrasound image denoising: Results of image quality metrics, radiomics, artificial intelligence, and clinical studies

PURPOSE

The quality of ultrasound images is degraded by speckle and Gaussian noises. This study aims to develop a deep-learning (DL)-based filter for ultrasound image denoising.

METHODS

A novel DL-based filter using adaptive residual (AdaRes) learning was proposed. Five image quality metrics (IQMs) and 27 radiomics features were used to evaluate denoising results. The effect of our proposed filter, AdaRes, on four pre-trained convolutional neural network (CNN) classification models and three radiologists was assessed.

RESULTS

AdaRes filter was tested on both natural and ultrasound image databases. IQMs results indicate that AdaRes could remove noises in three different noise levels with the highest performances. In addition, a radiomics study proved that AdaRes did not distort tissue textures and it could preserve most radiomics features. AdaRes could also improve the performance classification using CNNs in different settings. Finally, AdaRes also improved the mean overall performance (AUC) of three radiologists from 0.494 to 0.702 in the classification of benign and malignant lesions.

CONCLUSIONS

AdaRes filtered out noises on ultrasound images more effectively and can be used as an auxiliary preprocessing step in computer-aided diagnosis systems. Radiologists may use it to remove unwanted noises and improve the ultrasound image quality before the interpretation.

Diagnosis of Metastatic Lymph Nodes in Patients With Papillary Thyroid Cancer: A Comparative Multi-Center Study of Semantic Features and Deep Learning-Based Models

OBJECTIVES

Deep learning algorithms have shown potential in streamlining difficult clinical decisions. In the present study, we report the diagnostic profile of a deep learning model in differentiating malignant and benign lymph nodes in patients with papillary thyroid cancer.

METHODS

An in-house deep learning-based model called "ClymphNet" was developed and tested using two datasets containing ultrasound images of 195 malignant and 178 benign lymph nodes. An expert radiologist also viewed these ultrasound images and extracted qualitative imaging features used in routine clinical practice. These signs were used to train three different machine learning algorithms. Then the deep learning model was compared with the machine learning models on internal and external validation datasets containing 22 and 82 malignant and 20 and 76 benign lymph nodes, respectively.

RESULTS

Among the three machine learning algorithms, the support vector machine model (SVM) outperformed the best, reaching a sensitivity of 91.35%, specificity of 88.54%, accuracy of 90.00%, and an area under the curve (AUC) of 0.925 in all cohorts. The ClymphNet performed better than the SVM protocol in internal and external validation, achieving a sensitivity of 93.27%, specificity of 92.71%, and an accuracy of 93.00%, and an AUC of 0.948 in all cohorts.

CONCLUSION

A deep learning model trained with ultrasound images outperformed three conventional machine learning algorithms fed with qualitative imaging features interpreted by radiologists. Our study provides evidence regarding the utility of ClymphNet in the early and accurate differentiation of benign and malignant lymphadenopathy.

A two-stage renal disease classification based on transfer learning with hyperparameters optimization

Renal diseases are common health problems that affect millions of people around the world. Among these diseases, kidney stones, which affect anywhere from 1 to 15% of the global population and thus; considered one of the leading causes of chronic kidney diseases (CKD). In addition to kidney stones, renal cancer is the tenth most prevalent type of cancer, accounting for 2.5% of all cancers. Artificial intelligence (AI) in medical systems can assist radiologists and other healthcare professionals in diagnosing different renal diseases (RD) with high reliability. This study proposes an AI-based transfer learning framework to detect RD at an early stage. The framework presented on CT scans and images from microscopic histopathological examinations will help automatically and accurately classify patients with RD using convolutional neural network (CNN), pre-trained models, and an optimization algorithm on images. This study used the pre-trained CNN models VGG16, VGG19, Xception, DenseNet201, MobileNet, MobileNetV2, MobileNetV3Large, and NASNetMobile. In addition, the Sparrow search algorithm (SpaSA) is used to enhance the pre-trained model's performance using the best configuration. Two datasets were used, the first dataset are four classes: cyst, normal, stone, and tumor. In case of the latter, there are five categories within the second dataset that relate to the severity of the tumor: Grade 0, Grade 1, Grade 2, Grade 3, and Grade 4. DenseNet201 and MobileNet pre-trained models are the best for the four-classes dataset compared to others. Besides, the SGD Nesterov parameters optimizer is recommended by three models, while two models only recommend AdaGrad and AdaMax. Among the pre-trained models for the five-class dataset, DenseNet201 and Xception are the best. Experimental results prove the superiority of the proposed framework over other state-of-the-art classification models. The proposed framework records an accuracy of 99.98% (four classes) and 100% (five classes).

Multifeature Fusion Classification Method for Adaptive Endoscopic Ultrasonography Tumor Image

Endoscopic ultrasonography (EUS) has been found to be of great advantage in the diagnosis of digestive tract submucosal tumors. However, EUS-based diagnosis is limited by variability in subjective interpretation on the part of doctors. Tumor classification of ultrasound images with the computer-aided diagnosis system can significantly improve the diagnostic efficiency and accuracy of doctors. In this study, we proposed a multifeature fusion classification method for adaptive EUS tumor images. First, for different ultrasound tumor images, we selected the region of interest based on prior information to facilitate the estimation in the subsequent works. Second, we proposed a method based on image gray histogram feature extraction with principal component analysis dimensionality reduction, which learns the gray distribution of different tumor images effectively. Third, we fused the reduced grayscale features with the improved local binary pattern features and gray-level co-occurrence matrix features, and then used the multiclassification support vector machine. Finally, in the experiment, we selected the 431 ultrasound images of 109 patients in the hospital and compared the experimental effects of different features and different classifiers. The results revealed that the proposed method performed best, with the highest accuracy of 96.18% and an area under the curve of 99%. It is evident that the method proposed in this study can efficiently contribute to the classification of EUS tumor images.

Theranostic roles of machine learning in clinical management of kidney stone disease

Kidney stone disease (KSD) is a common illness caused by deposition of solid minerals formed inside the kidney. The disease prevalence varies, based on sociodemographic, lifestyle, dietary, genetic, gender, age, environmental and climatic factors, but has been continuously increasing worldwide. KSD is a highly recurrent disease, and the recurrence rate is about 11% within two years after the stone removal. Recently, machine learning has been widely used for KSD detection, stone type prediction, determination of appropriate treatment modality and prediction of therapeutic outcome. This review provides a brief overview of KSD and discusses how machine learning can be applied to diagnostics, therapeutics and prognostics in clinical management of KSD for better therapeutic outcome.

Recent Advances in Machine Learning Applied to Ultrasound Imaging

Machine learning (ML) methods are pervading an increasing number of fields of application because of their capacity to effectively solve a wide variety of challenging problems. The employment of ML techniques in ultrasound imaging applications started several years ago but the scientific interest in this issue has increased exponentially in the last few years. The present work reviews the most recent (2019 onwards) implementations of machine learning techniques for two of the most popular ultrasound imaging fields, medical diagnostics and non-destructive evaluation. The former, which covers the major part of the review, was analyzed by classifying studies according to the human organ investigated and the methodology (e.g., detection, segmentation, and/or classification) adopted, while for the latter, some solutions to the detection/classification of material defects or particular patterns are reported. Finally, the main merits of machine learning that emerged from the study analysis are summarized and discussed.

Judgment of benign and early malignant colorectal tumors from ultrasound images with deep multi-View fusion

BACKGROUND AND OBJECTIVE

Colorectal cancer (CRC) is currently one of the main cancers world-wide, with a high incidence in the elderly. In the diagnosis of CRC, endorectal ultrasound plays an important role in judging benign and early malignant tumors. However, malignant tumors in the early-stage are not easy to identify visually and experts usually seek help from multi-view images, which increases the workload and also exists a certain probability of misdiagnosis. In recent years, with the widespread use of deep learning methods in the analysis of medical images, it becomes necessary to design an effective computer-aided diagnosis (CAD) system of CRC based on multi-view endorectal ultrasound images.

METHOD

In this study, we proposed a CAD system for judging benign and early malignant colorectal tumors, and constructed the first multi-view ultrasound image dataset of CRC to validate our algorithm. Our system is an end-to-end model based on a deep neural network (DNN) which includes a feature extraction module based on dense blocks, a multi-view fusion module, and a Multi-Layer Perception-based classifier. A center loss was used for the first time in CAD tasks, to optimize our model.

RESULT

On the constructed dataset, the proposed system surpasses expert diagnosis in accuracy, sensitivity, specificity, and F1-score. Compared with the popular deep classification networks and other CAD methods, the algorithm has reached the best performance. Comparative experiments using different feature extraction methods, different view fusion strategies, and different classifiers verify the effectiveness of each part of the algorithm.

CONCLUSION

We propose a CAD system for judging benign and early malignant colorectal tumors based on DNN, which combines information of ultrasound images from different views for comprehension. On the first CRC multi-view ultrasound image dataset which we constructed, our method outperforms expert diagnosis results and all other methods, and the effectiveness of each part of the system has been verified. Our system has application value in future medical practice on early diagnosis of CRC.

Construction of a Computer-Aided Analysis System for Orthopedic Diseases Based on High-Frequency Ultrasound Images

The area of medical diagnosis has been transformed by computer-aided diagnosis (CAD). With the advancement of technology and the widespread availability of medical data, CAD has gotten a lot of attention, and numerous methods for predicting different pathological diseases have been created. Ultrasound (US) is the safest clinical imaging method; therefore, it is widely utilized in medical and healthcare settings with computer-aided systems. However, owing to patient movement and equipment constraints, certain artefacts make identification of these US pictures challenging. To enhance the quality of pictures for classification and segmentation, certain preprocessing techniques are required. Hence, we proposed a three-stage image segmentation method using U-Net and Iterative Random Forest Classifier (IRFC) to detect orthopedic diseases in ultrasound images efficiently. Initially, the input dataset is preprocessed using Enhanced Wiener Filter for image denoising and image enhancement. Then, the proposed segmentation method is applied. Feature extraction is performed by transform-based analysis. Finally, obtained features are reduced to optimal subset using Principal Component Analysis (PCA). The classification is done using the proposed Iterative Random Forest Classifier. The proposed method is compared with the conventional performance measures like accuracy, specificity, sensitivity, and dice score. The proposed method is proved to be efficient for detecting orthopedic diseases in ultrasound images than the conventional methods.