Convolutional neural network analysis of recurrence plots for high resolution melting classification

Developing deep learning methods for classification of teeth in dental panoramic radiography

OBJECTIVES

We aimed to develop an artificial intelligence-based clinical dental decision-support system using deep-learning methods to reduce diagnostic interpretation error and time and increase the effectiveness of dental treatment and classification.

STUDY DESIGN

We compared the performance of 2 deep-learning methods, You Only Look Once V4 (YOLO-V4) and Faster Regions with the Convolutional Neural Networks (R-CNN), for tooth classification in dental panoramic radiography for tooth classification in dental panoramic radiography to determine which is more successful in terms of accuracy, time, and detection ability. Using a method based on deep-learning models trained on a semantic segmentation task, we analyzed 1200 panoramic radiographs selected retrospectively. In the classification process, our model identified 36 classes, including 32 teeth and 4 impacted teeth.

RESULTS

The YOLO-V4 method achieved a mean 99.90% precision, 99.18% recall, and 99.54% F1 score. The Faster R-CNN method achieved a mean 93.67% precision, 90.79% recall, and 92.21% F1 score. Experimental evaluations showed that the YOLO-V4 method outperformed the Faster R-CNN method in terms of accuracy of predicted teeth in the tooth classification process, speed of tooth classification, and ability to detect impacted and erupted third molars.

CONCLUSIONS

The YOLO-V4 method outperforms the Faster R-CNN method in terms of accuracy of tooth prediction, speed of detection, and ability to detect impacted third molars and erupted third molars. The proposed deep learning based methods can assist dentists in clinical decision making, save time, and reduce the negative effects of stress and fatigue in daily practice.

Next-generation molecular diagnostics: Leveraging digital technologies to enhance multiplexing in real-time PCR

Real-time polymerase chain reaction (qPCR) enables accurate detection and quantification of nucleic acids and has become a fundamental tool in biological sciences, bioengineering and medicine. By combining multiple primer sets in one reaction, it is possible to detect several DNA or RNA targets simultaneously, a process called multiplex PCR (mPCR) which is key to attaining optimal throughput, cost-effectiveness and efficiency in molecular diagnostics, particularly in infectious diseases. Multiple solutions have been devised to increase multiplexing in qPCR, including single-well techniques, using target-specific fluorescent oligonucleotide probes, and spatial multiplexing, where segregation of the sample enables parallel amplification of multiple targets. However, these solutions are mostly limited to three or four targets, or highly sophisticated and expensive instrumentation. There is a need for innovations that will push forward the multiplexing field in qPCR, enabling for a next generation of diagnostic tools which could accommodate high throughput in an affordable manner. To this end, the use of machine learning (ML) algorithms (data-driven solutions) has recently emerged to leverage information contained in amplification and melting curves (AC and MC, respectively) - two of the most standard bio-signals emitted during qPCR - for accurate classification of multiple nucleic acid targets in a single reaction. Therefore, this review aims to demonstrate and illustrate that data-driven solutions can be successfully coupled with state-of-the-art and common qPCR platforms using a variety of amplification chemistries to enhance multiplexing in qPCR. Further, because both ACs and MCs can be predicted from sequence data using thermodynamic databases, it has also become possible to use computer simulation to rationalize and optimize the design of mPCR assays where target detection is supported by data-driven technologies. Thus, this review also discusses recent work converging towards the development of an end-to-end framework where knowledge-based and data-driven software solutions are integrated to streamline assay design, and increase the accuracy of target detection and quantification in the multiplex setting. We envision that concerted efforts by academic and industry scientists will help advance these technologies, to a point where they become mature and robust enough to bring about major improvements in the detection of nucleic acids across many fields.