1
|
García Meixide C, Matabuena M. Causal survival embeddings: Non-parametric counterfactual inference under right-censoring. Stat Methods Med Res 2025; 34:574-593. [PMID: 39930905 PMCID: PMC11951469 DOI: 10.1177/09622802241311455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2025]
Abstract
Counterfactual inference at the distributional level presents new challenges with censored targets, especially in modern healthcare problems. To mitigate selection bias in this context, we exploit the intrinsic structure of reproducing kernel Hilbert spaces (RKHS) harnessing the notion of kernel mean embedding. This enables the development of a non-parametric estimator of counterfactual survival functions. We provide rigorous theoretical guarantees regarding consistency and convergence rates of our new estimator under general hypotheses related to smoothness of the underlying RKHS. We illustrate the practical viability of our methodology through extensive simulations and a relevant case study: The SPRINT trial. Our estimatort presents a distinct perspective compared to existing methods within the literature, which often rely on semi-parametric approaches and confront limitations in causal interpretations of model parameters.
Collapse
Affiliation(s)
- Carlos García Meixide
- Instituto de Ciencias Matemáticas (ICMAT-CSIC), Madrid, Spain
- Departamento de Matemáticas, Universidad Autónoma de Madrid, Madrid, Spain
- ETH Zürich, Zurich, Switzerland
| | | |
Collapse
|
2
|
Jiang H, Wang H, Pan T, Liu Y, Jing P, Liu Y. Mobile Application and Machine Learning-Driven Scheme for Intelligent Diabetes Progression Analysis and Management Using Multiple Risk Factors. Bioengineering (Basel) 2024; 11:1053. [PMID: 39593713 PMCID: PMC11591091 DOI: 10.3390/bioengineering11111053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Revised: 10/16/2024] [Accepted: 10/17/2024] [Indexed: 11/28/2024] Open
Abstract
Diabetes mellitus is a chronic disease that affects over 500 million people worldwide, necessitating personalized health management programs for effective long-term control. Among the various biomarkers, glycated hemoglobin (HbA1c) is a crucial indicator for monitoring long-term blood glucose levels and assessing diabetes progression. This study introduces an innovative approach to diabetes management by integrating a mobile application and machine learning. We designed and implemented an intelligent application capable of collecting comprehensive data from diabetic patients, creating a novel diabetes dataset named DiabMini with 127 features of 88 instances, including medical information, personal information, and detailed nutrient intake and lifestyle. Leveraging the DiabMini, we focused the analysis on HbA1c dynamics due to their clinical significance in tracking diabetes progression. We developed a stacking model combining eXtreme Gradient Boosting (XGBoost), Support Vector Classifier (SVC), Extra Trees (ET), and K-Nearest Neighbors (KNN) to explore the impact of various influencing factors on HbA1c dynamics, which achieved a classification accuracy of 94.23%. Additionally, we applied SHapley Additive exPlanations (SHAP) to visualize the contributions of risk factors to HbA1c dynamics, thus clarifying the differential impacts of these factors on diabetes progression. In conclusion, this study demonstrates the potential of integrating mobile health applications with machine learning to enhance personalized diabetes management.
Collapse
Affiliation(s)
- Huaiyan Jiang
- School of Microelectronics, Tianjin University, Tianjin 300072, China; (H.J.); (H.W.); (T.P.); (Y.L.)
| | - Han Wang
- School of Microelectronics, Tianjin University, Tianjin 300072, China; (H.J.); (H.W.); (T.P.); (Y.L.)
| | - Ting Pan
- School of Microelectronics, Tianjin University, Tianjin 300072, China; (H.J.); (H.W.); (T.P.); (Y.L.)
| | - Yuhang Liu
- School of Microelectronics, Tianjin University, Tianjin 300072, China; (H.J.); (H.W.); (T.P.); (Y.L.)
| | - Peiguang Jing
- School of Electrical and Information Engineering, Tianjin University, Tianjin 300072, China;
| | - Yu Liu
- School of Microelectronics, Tianjin University, Tianjin 300072, China; (H.J.); (H.W.); (T.P.); (Y.L.)
- Zhejiang International Institute for Innovative Design and Intelligent Manufacturing, Tianjin University, Shaoxing 312077, China
| |
Collapse
|
3
|
Gómez-Peralta F, Leiva-Gea I, Duque N, Artime E, Rubio de Santos M. Impact of Continuous Glucose Monitoring and its Glucometrics in Clinical Practice in Spain and Future Perspectives: A Narrative Review. Adv Ther 2024; 41:3471-3488. [PMID: 39093492 DOI: 10.1007/s12325-024-02943-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 07/03/2024] [Indexed: 08/04/2024]
Abstract
INTRODUCTION Continuous glucose monitoring (CGM) devices allow for 24-h real-time measurement of interstitial glucose levels and have changed the interaction between people with diabetes and their health care providers. The large amount of data generated by CGM can be analyzed and evaluated using a set of standardized parameters, collectively named glucometrics. This review aims to provide a summary of the existing evidence on the use of glucometrics data and its impact on clinical practice based on published studies involving adults and children with type 1 diabetes (T1D) in Spain. METHODS The PubMed and MEDES (Spanish Medical literature) databases were searched covering the years 2018-2022 and including clinical and observational studies, consensus guidelines, and meta-analyses on CGM and glucometrics conducted in Spain. RESULTS A total of 16 observational studies were found on the use of CGM in Spain, which have shown that cases of severe hypoglycemia in children with T1D were greatly reduced after the introduction of CGM, resulting in a significant reduction in costs. Real-world data from Spain shows that CGM is associated with improved glycemic markers (increased time in range, reduced time below and above range, and glycemic variability), and that there is a relationship between glycemic variability and hypoglycemia. Also, CGM and analysis of glucometrics proved highly useful during the COVID-19 pandemic. New glucometrics, such as the glycemic risk index, or new mathematical approaches to the analysis of CGM-derived glucose data, such as "glucodensities," could help patients to achieve better glycemic control in the future. CONCLUSION By using glucometrics in clinical practice, clinicians can better assess glycemic control and a patient's individual response to treatment.
Collapse
Affiliation(s)
| | - Isabel Leiva-Gea
- Pediatric Endocrinology Service, Hospital Regional de Málaga, Málaga, Spain
- Instituto de Investigación Biomédica de Málaga (IBIMA), Málaga, Spain
| | - Natalia Duque
- Eli Lilly and Company, Av. de la Industria 30, Alcobendas, 28108, Madrid, Spain.
| | - Esther Artime
- Eli Lilly and Company, Av. de la Industria 30, Alcobendas, 28108, Madrid, Spain
| | | |
Collapse
|
4
|
Gomez-Peralta F, Chico Ballesteros A, Marco Martínez A, Pérez Corral B, Conget Donlo I, Fuentealba Melo P, Zaragozá Arnáez F, Matabuena Rodríguez M. Insulin glargine 300 U/ml versus insulin degludec 100 U/ml improves nocturnal glycaemic control and variability in type 1 diabetes under routine clinical practice: A glucodensities-based post hoc analysis of the OneCare study. Diabetes Obes Metab 2024; 26:1993-1997. [PMID: 38379106 DOI: 10.1111/dom.15496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 01/19/2024] [Accepted: 01/28/2024] [Indexed: 02/22/2024]
Affiliation(s)
| | - Ana Chico Ballesteros
- Department of Endocrinology and Nutrition, Hospital Santa Creu i Sant Pau, Barcelona, Spain. CIBER-BBN, Instituto de Salud Carlos III, Madrid, Spain. Universitat Autònoma de Barcelona, Barcelona, Spain
| | | | | | - Ignacio Conget Donlo
- Diabetes Unit, Department of Endocrinology and Nutrition, IDF Centre of Education and Excellence in Diabetes Care, ICMDM, IDIBAPS, Hospital Clínic, Barcelona, Spain
| | | | | | - Marcos Matabuena Rodríguez
- CiTIUS (Centro Singular de Investigación en Tecnoloxías Intelixentes), Universidade de Santiago de Compostela, Santiago de Compostela, Spain
| |
Collapse
|
5
|
Hammouri ZAA, Mier PR, Félix P, Mansournia MA, Huelin F, Casals M, Matabuena M. Uncertainty Quantification in Medicine Science: The Next Big Step. Arch Bronconeumol 2023; 59:760-761. [PMID: 37532646 DOI: 10.1016/j.arbres.2023.07.018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 07/16/2023] [Accepted: 07/17/2023] [Indexed: 08/04/2023]
Affiliation(s)
- Ziad Akram Ali Hammouri
- Centro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS), Universidad de Santiago de Compostela, Spain
| | - Pablo Rodríguez Mier
- Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany
| | - Paulo Félix
- Centro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS), Universidad de Santiago de Compostela, Spain
| | - Mohammad Ali Mansournia
- Department of Epidemiology and Biostatistics, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran; Sports Medicine Research Centre, Neuroscience Institute, Tehran University of Medical Sciences, Tehran, Iran
| | | | - Martí Casals
- Sport and Physical Activity Studies Centre (CEEAF), Faculty of Medicine, University of Vic-Central University of Catalonia (UVic-UCC), Spain; Sport Performance Analysis Research Group, University of Vic-Central University of Catalonia (UVic-UCC), Barcelona, Spain; National Institute of Physical Education of Catalonia (INEFC), University of Barcelona, Barcelona, Spain
| | - Marcos Matabuena
- Centro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS), Universidad de Santiago de Compostela, Spain.
| |
Collapse
|
6
|
Xiao S, Jiang F, Chen Y, Gong X. Development and validation of a prediction tool for intraoperative blood transfusion in brain tumor resection surgery: a retrospective analysis. Sci Rep 2023; 13:17428. [PMID: 37833334 PMCID: PMC10575918 DOI: 10.1038/s41598-023-44549-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 10/10/2023] [Indexed: 10/15/2023] Open
Abstract
Early identification of a patient with a high risk of blood transfusion during brain tumor resection surgery is difficult but critical for implementing preoperative blood-saving strategies. This study aims to develop and validate a machine learning prediction tool for intraoperative blood transfusion in brain tumor resection surgery. A total of 541 patients who underwent brain tumor resection surgery in our hospital from January 2019 to December 2021 were retrospectively enrolled in this study. We incorporated demographics, preoperative comorbidities, and laboratory risk factors. Features were selected using the least absolute shrinkage and selection operator (LASSO). Eight machine learning algorithms were benchmarked to identify the best model to predict intraoperative blood transfusion. The prediction tool was established based on the best algorithm and evaluated with discriminative ability. The data were randomly split into training and test groups at a ratio of 7:3. LASSO identified seven preoperative relevant factors in the training group: hemoglobin, diameter, prothrombin time, white blood cell count (WBC), age, physical status of the American Society of Anesthesiologists (ASA) classification, and heart function. Logistic regression, linear discriminant analysis, supporter vector machine, and ranger all performed better in the eight machine learning algorithms with classification errors of 0.185, 0.193, 0.199, and 0.196, respectively. A nomogram was then established, and the model showed a better discrimination ability [0.817, 95% CI (0.739, 0.895)] than hemoglobin [0.663, 95% CI (0.557, 0.770)] alone in the test group (P = 0.000). Hemoglobin, diameter, prothrombin time, WBC, age, ASA status, and heart function are risk factors of intraoperative blood transfusion in brain tumor resection surgery. The prediction tool established using the logistic regression algorithm showed a good discriminative ability than hemoglobin alone for predicting intraoperative blood transfusion in brain tumor resection surgery.
Collapse
Affiliation(s)
- Shugen Xiao
- Institution of Brain Disease and Neuroscience, Department of Anesthesiology, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, Hubei, China
| | - Fei Jiang
- Institution of Brain Disease and Neuroscience, Department of Anesthesiology, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, Hubei, China
| | - Yongmei Chen
- Department of Laboratory, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, Hubei, China.
| | - Xingrui Gong
- Institution of Brain Disease and Neuroscience, Department of Anesthesiology, Xiangyang Central Hospital, Affiliated Hospital of Hubei University of Arts and Science, Xiangyang, Hubei, China.
| |
Collapse
|
7
|
Cui EH, Goldfine AB, Quinlan M, James DA, Sverdlov O. Investigating the value of glucodensity analysis of continuous glucose monitoring data in type 1 diabetes: an exploratory analysis. FRONTIERS IN CLINICAL DIABETES AND HEALTHCARE 2023; 4:1244613. [PMID: 37753312 PMCID: PMC10518413 DOI: 10.3389/fcdhc.2023.1244613] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 08/14/2023] [Indexed: 09/28/2023]
Abstract
Introduction Continuous glucose monitoring (CGM) devices capture longitudinal data on interstitial glucose levels and are increasingly used to show the dynamics of diabetes metabolism. Given the complexity of CGM data, it is crucial to extract important patterns hidden in these data through efficient visualization and statistical analysis techniques. Methods In this paper, we adopted the concept of glucodensity, and using a subset of data from an ongoing clinical trial in pediatric individuals and young adults with new-onset type 1 diabetes, we performed a cluster analysis of glucodensities. We assessed the differences among the identified clusters using analysis of variance (ANOVA) with respect to residual pancreatic beta-cell function and some standard CGM-derived parameters such as time in range, time above range, and time below range. Results Distinct CGM data patterns were identified using cluster analysis based on glucodensities. Statistically significant differences were shown among the clusters with respect to baseline levels of pancreatic beta-cell function surrogate (C-peptide) and with respect to time in range and time above range. Discussion Our findings provide supportive evidence for the value of glucodensity in the analysis of CGM data. Some challenges in the modeling of CGM data include unbalanced data structure, missing observations, and many known and unknown confounders, which speaks to the importance of--and provides opportunities for--taking an approach integrating clinical, statistical, and data science expertise in the analysis of these data.
Collapse
Affiliation(s)
- Elvis Han Cui
- Department of Biostatistics, University of California, Los Angeles, Los Angeles, CA, United States
| | - Allison B. Goldfine
- Division of Translational Medicine, Cardiometabolic Disease, Novartis Institutes for Biomedical Research, Cambridge, MA, United States
| | - Michelle Quinlan
- Early Development Analytics, Novartis Pharmaceuticals Corporation, East Hanover, NJ, United States
| | - David A. James
- Methodology and Data Science, Novartis Pharmaceuticals Corporation, East Hanover, NJ, United States
| | - Oleksandr Sverdlov
- Early Development Analytics, Novartis Pharmaceuticals Corporation, East Hanover, NJ, United States
| |
Collapse
|