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Skrabkova HS, Chernysheva MG, Baygildiev TM, Shnitko AV, Kasperovich AV, Egorova TB, Badun GA, Arutyunyan AM, Ksenofontov AL, Rodin IA. Lysozyme binding with amikacin and levofloxacin studied by tritium probe, fluorescence spectroscopy and molecular docking. Arch Biochem Biophys 2024; 751:109848. [PMID: 38065249 DOI: 10.1016/j.abb.2023.109848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 10/28/2023] [Accepted: 12/01/2023] [Indexed: 12/22/2023]
Abstract
Lysozyme complexes with amikacin and levofloxacin were studied by spectroscopy approaches as well as using a tritium probe. Tritium was used as a labeling agent to trace labeled compound concentration in a system of two immiscible liquids and in the atomic form to determine the possible position of the binding site. Co-adsorption of protein and drug at the liquid-liquid interface was analyzed by scintillation phase method that allowed us to directly determine the amount of protein and drug in the mixed adsorption layer. Also, tensiometric measuring of the interfacial tension was used for calculation of binding parameters accordingly to Fainerman model. The treatment of complexes with atomic tritium followed by trypsinolysis and analysis of tritium distribution in the lysozyme peptides reveals the binding sites, binding energies in which were analyzed using molecular docking. Formation of complexes with amikacin and levofloxacin preserves secondar structure of protein. However, the formation of complex with amikacin leads to the almost total loss of the enzymatic activity of lysozyme and the redshift of the maximum on the lysozyme fluorescence band. A slight decrease in the distribution coefficient of lysozyme in the presence of amikacin assumes that the complex has higher hydrophilicity in comparison to lysozyme without additives. The most favorable for binding were the positions of the active centers that included amino acids Asp52 and Glu35, as well as in the vicinity of peptide His15-Arg21, with the participation of amino acids Tyr20, Arg14. In the case of levofloxacin, the formation of lysozyme-ligand complex in aqueous solution is possible without changing the microenvironment of the active center of the protein. Binding of levofloxacin to the active center of the enzyme was the most favorable, but Asp52 and Glu35 that are responsible for the enzymatic activity of lysozyme, were not affected.
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Affiliation(s)
- Hanna S Skrabkova
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Maria G Chernysheva
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia.
| | - Timur M Baygildiev
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Alexey V Shnitko
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | | | - Tolganay B Egorova
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Gennadii A Badun
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
| | - Alexander M Arutyunyan
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992, Moscow, Russia
| | - Alexander L Ksenofontov
- Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 119992, Moscow, Russia
| | - Igor A Rodin
- Department of Chemistry, Lomonosov Moscow State University, 119991, Moscow, Russia
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Onsite coalescence behaviour of whey protein-stabilized bubbles generated at parallel microscale pores: Role of pore geometry and liquid phase properties. Food Hydrocoll 2022. [DOI: 10.1016/j.foodhyd.2022.108435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Kinetics of transfer of volatile amphiphiles (fragrances) from vapors to aqueous drops and vice versa: Interplay of diffusion and barrier mechanisms. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2021.126931] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Wang JJ, Yang J, Wang Y, Zheng H, Tian Z, Zhang Y, Ou S, Hu SQ, Chen L. Heat and edible salts induced aggregation of the N-terminal domain of HMW 1Dx5 and its effects on the interfacial properties. Food Hydrocoll 2018. [DOI: 10.1016/j.foodhyd.2018.04.029] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Fainerman VB, Kovalchuk VI, Aksenenko EV, Zinkovych II, Makievski AV, Nikolenko MV, Miller R. Dilational Viscoelasticity of Proteins Solutions in Dynamic Conditions. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2018; 34:6678-6686. [PMID: 29783835 DOI: 10.1021/acs.langmuir.8b00631] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Drop profile analysis tensiometry used in the oscillating drop mode provides the dilational viscoelasticity of adsorption layers at liquid interfaces. Applied during the progress of adsorption the dynamic surface rheology can be monitored. For β-casein solutions at the same surface pressure values, the larger the dynamic dilational viscoelasticity the longer the adsorption time, i.e., the smaller the studied protein concentration is. For β-lactoglobulin and human serum albumin, the differences in the viscoelasticity values are less or not dependent on the adsorption time at identical surface pressures. The observed effects are caused by the flexibility of BCS, while the globular proteins BLG and HSA do not change their conformation significantly within the adsorption layer.
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Affiliation(s)
| | | | - Eugene V Aksenenko
- Institute of Colloid Chemistry and Chemistry of Water , Kyiv (Kiev) 03680 , Ukraine
| | - Igor I Zinkovych
- Maxim Gorki Donetsk National Medical University , Kirovohrad 25015 , Ukraine
| | | | - Mykola V Nikolenko
- Ukrainian State University of Chemical Technology , Dnipro 49005 , Ukraine
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Miller R, Aksenenko EV, Kovalchuk VI, Fainerman VB. Adsorption of C 14EO 8 at the interface between its aqueous solution drop and air saturated by different alkanes vapor. Phys Chem Chem Phys 2018; 19:2193-2200. [PMID: 28045155 DOI: 10.1039/c6cp07705f] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
The dynamic and equilibrium surface tension for drops of aqueous C14EO8 solutions at the interface to pure air or pentane, hexane, heptane and toluene saturated air, and the dynamic surface tension of pure water at these interfaces are presented. Two theoretical models were employed: both assuming a diffusion controlled adsorption of the surfactant, and either a diffusion or kinetic barrier governed adsorption of the alkanes. The experimental results are best described by the model which implies a diffusion control for the C14EO8 molecules and the existence of a kinetic barrier for the alkane molecules. The desorption of alkanes from the surface layer after equilibration and their subsequent removal from the measuring cell was studied as well. The desorption process was shown to be slow for heptane and hexane. However, for the pentane vapor the desorption is quite rapid, and after the desorption commences the surface tension becomes equal to that at the interface with pure air.
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Affiliation(s)
- R Miller
- MPI Colloids and Interfaces, Potsdam, Germany.
| | - E V Aksenenko
- Institute of Colloid Chemistry and Chemistry of Water, Kyiv (Kiev), Ukraine
| | - V I Kovalchuk
- Institute of Biocolloid Chemistry, Kyiv (Kiev), Ukraine
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Kairaliyeva T, Aksenenko EV, Mucic N, Makievski AV, Fainerman VB, Miller R. Surface Tension and Adsorption Studies by Drop Profile Analysis Tensiometry. J SURFACTANTS DETERG 2017; 20:1225-1241. [PMID: 29200810 PMCID: PMC5686271 DOI: 10.1007/s11743-017-2016-y] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2017] [Accepted: 08/23/2017] [Indexed: 10/25/2022]
Abstract
Surface tension and dilational viscoelasticity of solutions of various surfactants measured with bubble and drop profile analysis tensiometry are discussed. The study also includes experiments on the co-adsorption of surfactant molecules from a solution drop and alkane molecules from saturated alkane vapor phase. Using experimental data for 12 surfactants with different surface activities, it is shown that depletion due to adsorption of surfactant from the drop bulk can be significant. An algorithm is proposed quantitatively to take into consideration the depletion effect which is required for a correct description of the co-adsorption of alkanes on the solution drop surface and the correct analysis of experimental dynamic surface tension data to determine the adsorption mechanism. Bubble and drop profile analysis tensiometry is also the method of choice for measuring the dilational viscoelasticity of the adsorbed interfacial layer. The same elasticity moduli are obtained with the bubble and drop method only when the equilibrium surface pressures are sufficiently small (Π < 15 mN m-1). When the surface pressure for a surfactant solution is larger than this value, the viscoelasticity moduli determined from drop profile experiments become significantly larger than those obtained from bubble profile measurements.
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Affiliation(s)
- T. Kairaliyeva
- Max-Planck-Institut für Kolloid-und Grenzflächenforschung, Potsdam, Germany
| | - E. V. Aksenenko
- Institute of Colloid Chemistry and Chemistry of Water, Kyiv (Kiev), Ukraine
| | - N. Mucic
- Faculty of Technology, University of Novi Sad, Novi Sad, Serbia
| | | | | | - Reinhard Miller
- Max-Planck-Institut für Kolloid-und Grenzflächenforschung, Potsdam, Germany
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