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Zaylaa AJ, Kourtian S. Advancing Breast Cancer Diagnosis through Breast Mass Images, Machine Learning, and Regression Models. SENSORS (BASEL, SWITZERLAND) 2024; 24:2312. [PMID: 38610522 PMCID: PMC11014206 DOI: 10.3390/s24072312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Revised: 03/24/2024] [Accepted: 03/27/2024] [Indexed: 04/14/2024]
Abstract
Breast cancer results from a disruption of certain cells in breast tissue that undergo uncontrolled growth and cell division. These cells most often accumulate and form a lump called a tumor, which may be benign (non-cancerous) or malignant (cancerous). Malignant tumors can spread quickly throughout the body, forming tumors in other areas, which is called metastasis. Standard screening techniques are insufficient in the case of metastasis; therefore, new and advanced techniques based on artificial intelligence (AI), machine learning, and regression models have been introduced, the primary aim of which is to automatically diagnose breast cancer through the use of advanced techniques, classifiers, and real images. Real fine-needle aspiration (FNA) images were collected from Wisconsin, and four classifiers were used, including three machine learning models and one regression model: the support vector machine (SVM), naive Bayes (NB), k-nearest neighbors (k-NN), and decision tree (DT)-C4.5. According to the accuracy, sensitivity, and specificity results, the SVM algorithm had the best performance; it was the most powerful computational classifier with a 97.13% accuracy and 97.5% specificity. It also had around a 96% sensitivity for the diagnosis of breast cancer, unlike the models used for comparison, thereby providing an exact diagnosis on the one hand and a clear classification between benign and malignant tumors on the other hand. As a future research prospect, more algorithms and combinations of features can be considered for the precise, rapid, and effective classification and diagnosis of breast cancer images for imperative decisions.
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Affiliation(s)
- Amira J. Zaylaa
- Biomedical Engineering Program, Electrical and Computer Engineering Department, Faculty of Engineering, Beirut Arab University, Debbieh P.O. Box 11-5020, Lebanon
| | - Sylva Kourtian
- Centre de Recherche du Centre Hospitalier, l’Université de Montréal, Montréal, QC H2X 0A9, Canada;
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Guan Y, Wang X, Li H, Zhang Z, Chen X, Siddiqui O, Nehring S, Huang X. Detecting Asymmetric Patterns and Localizing Cancers on Mammograms. PATTERNS 2020; 1. [PMID: 33073255 PMCID: PMC7566852 DOI: 10.1016/j.patter.2020.100106] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
One in eight women develops invasive breast cancer in her lifetime. The frontline protection against this disease is mammography. While computer-assisted diagnosis algorithms have made great progress in generating reliable global predictions, few focus on simultaneously producing regions of interest (ROIs) for biopsy. Can we combine ROI-oriented algorithms with global classification of cancer status, which simultaneously highlight suspicious regions and optimize classification performance? Can the asymmetry of breasts be adopted in deep learning for finding lesions and classifying cancers? We answer the above questions by building deep-learning networks that identify masses and microcalcifications in paired mammograms, exclude false positives, and stepwisely improve performance of the model with asymmetric information regarding the breasts. This method achieved a co-leading place in the Digital Mammography DREAM Challenge for predicting breast cancer. We highlight here the importance of this dual-purpose process that simultaneously provides the locations of potential lesions in mammograms. A top-performing algorithm in the International DREAM Digital Mammography Challenge Shows efficacy of asymmetric information from opposite breasts in identifying cancers Integrated pixel-level localization and overall classification into the same software
Breast cancer affects one out of eight women in their lifetime. Given the importance of the need, in this work we present a region-of-interest-oriented deep-learning pipeline for detecting and locating breast cancers based on digital mammograms. It is a leading algorithm in the well-received Digital Mammography DREAM Challenge, in which computational methods were evaluated on large-scale, held-out testing sets of digital mammograms. This algorithm connects two aims: (1) determining whether a breast has cancer and (2) determining cancer-associated regions of interest. Particularly, we addressed the challenge of variation of mammogram images across different patients by pairing up the two opposite breasts to examine asymmetry, which substantially improved global classification as well as local lesion detection. We have dockerized this code, envisioning that it will be widely used in practice and as a future reference for digital mammography analysis.
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Affiliation(s)
- Yuanfang Guan
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.,Lead Contact
| | - Xueqing Wang
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
| | - Hongyang Li
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
| | - Zhenning Zhang
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA.,Present address: AstraZeneca, 950 Wind River Lane, Gaithersburg, MD 20878, USA
| | - Xianghao Chen
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
| | - Omer Siddiqui
- Department of Computational Medicine & Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
| | - Sara Nehring
- Translational Research Lab of Arkansas State University and St. Bernard's Medical Center, Jonesboro, AR 72467, USA
| | - Xiuzhen Huang
- Translational Research Lab of Arkansas State University and St. Bernard's Medical Center, Jonesboro, AR 72467, USA
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Ghammraoui B, Makeev A, Zidan A, Alayoubi A, Glick SJ. Classification of breast microcalcifications using dual-energy mammography. J Med Imaging (Bellingham) 2019; 6:013502. [PMID: 30891465 PMCID: PMC6411940 DOI: 10.1117/1.jmi.6.1.013502] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2018] [Accepted: 02/19/2019] [Indexed: 11/14/2022] Open
Abstract
The potential of dual-energy mammography for microcalcification classification was investigated with simulation and phantom studies. Classification of type I/II calcifications was performed using the tissue attenuation ratio as a performance metric. The simulation and phantom studies were carried out using breast phantoms of 50% fibroglandular and 50% adipose tissue composition and thicknessess ranging from 3 to 6 cm. The phantoms included models of microcalcifications ranging in size between 200 and 900 μ m . The simulation study was carried out with fixed MGD of 1.5 mGy using various low- and high-kVp spectra, aluminum filtration thicknesses, and exposure distribution ratios to predict an optimized imaging protocol for the phantom study. Attenuation ratio values were calculated for microcalcification signals of different types at two different voltage settings. ROC analysis showed that classification performance as indicated by the area under the ROC curve was always greater than 0.95 for 1.5 mGy deposited mean glandular dose. This study provides encouraging first results in classifying malignant and benign microcalcifications based solely on dual-energy mammography images.
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Affiliation(s)
- Bahaa Ghammraoui
- U.S. Food and Drug Administration, CDRH, Division of Imaging Diagnostics and Software Reliability, Silver Spring, Maryland, United States
| | - Andrey Makeev
- U.S. Food and Drug Administration, CDRH, Division of Imaging Diagnostics and Software Reliability, Silver Spring, Maryland, United States
| | - Ahmed Zidan
- CDER, Division of Product Quality Research, Office of testing and Research, Silver Spring, Maryland, United States
| | - Alaadin Alayoubi
- CDER, Division of Product Quality Research, Office of testing and Research, Silver Spring, Maryland, United States
| | - Stephen J. Glick
- U.S. Food and Drug Administration, CDRH, Division of Imaging Diagnostics and Software Reliability, Silver Spring, Maryland, United States
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Abstract
This publication presents a computer method for segmenting microcalcifications in mammograms. It makes use of morphological transformations and is composed of two parts. The first part detects microcalcifications morphologically, thus allowing the approximate area of their occurrence to be determined, the contrast to be improved, and noise to be reduced in the mammograms. In the second part, a watershed segmentation of microcalcifications is carried out. This study was carried out on a test set containing 200 ROIs 512 × 512 pixels in size, taken from mammograms from the Digital Database for Screening Mammography (DDSM), including 100 cases showing malignant lesions and 100 cases showing benign ones. The experiments carried out yielded the following average values of the measured indices: 80.5% (similarity index), 75.7% (overlap fraction), 70.8% (overlap value), and 19.8% (extra fraction). The average time of executing all steps of the methods used for a single ROI amounted to 0.83 s.
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Affiliation(s)
- Marcin Ciecholewski
- Faculty of Mathematics and Computer Science, Jagiellonian University, ul. Łojasiewicza 6, 30-348, Kraków, Poland.
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Ghammraoui B, Glick SJ. Investigating the feasibility of classifying breast microcalcifications using photon-counting spectral mammography: A simulation study. Med Phys 2017; 44:2304-2311. [DOI: 10.1002/mp.12230] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2016] [Revised: 02/27/2017] [Accepted: 02/27/2017] [Indexed: 11/11/2022] Open
Affiliation(s)
- Bahaa Ghammraoui
- Office of Science and Engineering Laboratories; CDRH; U.S. Food and Drug Administration; Silver Spring MD 20993-0002 USA
| | - Stephen J. Glick
- Office of Science and Engineering Laboratories; CDRH; U.S. Food and Drug Administration; Silver Spring MD 20993-0002 USA
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Duarte MA, Alvarenga AV, Azevedo CM, Calas MJG, Infantosi AFC, Pereira WCA. Evaluating geodesic active contours in microcalcifications segmentation on mammograms. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2015; 122:304-315. [PMID: 26363676 DOI: 10.1016/j.cmpb.2015.08.016] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Revised: 07/23/2015] [Accepted: 08/24/2015] [Indexed: 06/05/2023]
Abstract
Breast cancer is the most commonly occurring type of cancer among women, and it is the major cause of female cancer-related deaths worldwide. Its incidence is increasing in developed as well as developing countries. Efficient strategies to reduce the high death rates due to breast cancer include early detection and tumor removal in the initial stages of the disease. Clinical and mammographic examinations are considered the best methods for detecting the early signs of breast cancer; however, these techniques are highly dependent on breast characteristics, equipment quality, and physician experience. Computer-aided diagnosis (CADx) systems have been developed to improve the accuracy of mammographic diagnosis; usually such systems may involve three steps: (i) segmentation; (ii) parameter extraction and selection of the segmented lesions and (iii) lesions classification. Literature considers the first step as the most important of them, as it has a direct impact on the lesions characteristics that will be used in the further steps. In this study, the original contribution is a microcalcification segmentation method based on the geodesic active contours (GAC) technique associated with anisotropic texture filtering as well as the radiologists' knowledge. Radiologists actively participate on the final step of the method, selecting the final segmentation that allows elaborating an adequate diagnosis hypothesis with the segmented microcalcifications presented in a region of interest (ROI). The proposed method was assessed by employing 1000 ROIs extracted from images of the Digital Database for Screening Mammography (DDSM). For the selected ROIs, the rate of adequately segmented microcalcifications to establish a diagnosis hypothesis was at least 86.9%, according to the radiologists. The quantitative test, based on the area overlap measure (AOM), yielded a mean of 0.52±0.20 for the segmented images, when all 2136 segmented microcalcifications were considered. Moreover, a statistical difference was observed between the AOM values for large and small microcalcifications. The proposed method had better or similar performance as compared to literature for microcalcifications with maximum diameters larger than 460μm. For smaller microcalcifications the performance was limited.
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Affiliation(s)
- Marcelo A Duarte
- Biomedical Engineering Program, Instituto Alberto Luiz Coimbra (COPPE), Federal University of Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
| | - Andre V Alvarenga
- Laboratory of Ultrasound, National Institute of Metrology, Quality and Technology (INMETRO), Rio de Janeiro, Brazil.
| | - Carolina M Azevedo
- Gaffrée & Guinle University Hospital, University of Rio de Janeiro (UNIRIO), Rio de Janeiro, Brazil
| | - Maria Julia G Calas
- Department of Radiology, School of Medicine, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
| | - Antonio F C Infantosi
- Biomedical Engineering Program, Instituto Alberto Luiz Coimbra (COPPE), Federal University of Rio de Janeiro, Rio de Janeiro 21941-972, Brazil.
| | - Wagner C A Pereira
- Biomedical Engineering Program, Instituto Alberto Luiz Coimbra (COPPE), Federal University of Rio de Janeiro, Rio de Janeiro 21941-972, Brazil
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Arikidis N, Vassiou K, Kazantzi A, Skiadopoulos S, Karahaliou A, Costaridou L. A two-stage method for microcalcification cluster segmentation in mammography by deformable models. Med Phys 2015; 42:5848-61. [DOI: 10.1118/1.4930246] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Introduction to the special issue on biomedical image technologies and methods. Comput Med Imaging Graph 2010; 34:415-7. [PMID: 20576402 DOI: 10.1016/j.compmedimag.2010.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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