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Physical imaging parameter variation drives domain shift. Sci Rep 2022; 12:21302. [PMID: 36494393 PMCID: PMC9734181 DOI: 10.1038/s41598-022-23990-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2022] [Accepted: 11/09/2022] [Indexed: 12/13/2022] Open
Abstract
Statistical learning algorithms strongly rely on an oversimplified assumption for optimal performance, that is, source (training) and target (testing) data are independent and identically distributed. Variation in human tissue, physician labeling and physical imaging parameters (PIPs) in the generative process, yield medical image datasets with statistics that render this central assumption false. When deploying models, new examples are often out of distribution with respect to training data, thus, training robust dependable and predictive models is still a challenge in medical imaging with significant accuracy drops common for deployed models. This statistical variation between training and testing data is referred to as domain shift (DS).To the best of our knowledge we provide the first empirical evidence that variation in PIPs between test and train medical image datasets is a significant driver of DS and model generalization error is correlated with this variance. We show significant covariate shift occurs due to a selection bias in sampling from a small area of PIP space for both inter and intra-hospital regimes. In order to show this, we control for population shift, prevalence shift, data selection biases and annotation biases to investigate the sole effect of the physical generation process on model generalization for a proxy task of age group estimation on a combined 44 k image mammogram dataset collected from five hospitals.We hypothesize that training data should be sampled evenly from PIP space to produce the most robust models and hope this study provides motivation to retain medical image generation metadata that is almost always discarded or redacted in open source datasets. This metadata measured with standard international units can provide a universal regularizing anchor between distributions generated across the world for all current and future imaging modalities.
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Wu Y, Zhang W, Shao X, Yang Y, Zhang T, Lei M, Wang Z, Gao B, Hu S. Research on the Multi-Element Synthetic Aperture Focusing Technique in Breast Ultrasound Imaging, Based on the Ring Array. MICROMACHINES 2022; 13:1753. [PMID: 36296106 PMCID: PMC9609697 DOI: 10.3390/mi13101753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Revised: 10/10/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
As a widely clinical detection method, ultrasonography (US) has been applied to the diagnosis of breast cancer. In this paper, the multi-element synthetic aperture focusing (M-SAF) is applied to the ring array of breast ultrasonography (US) imaging, which addresses the problem of low imaging quality due to the single active element for each emission and the reception in the synthetic aperture focusing. In order to determine the optimal sub-aperture size, the formula is derived for calculating the internal sound pressure of the ring array with a 200 mm diameter, and the sound pressure distribution is analyzed. The ring array with 1024 elements (1024 ring array) is established in COMSOL Multiphysics 5.6, and the optimal sub-aperture size is 16 elements, according to the sound field beam simulation and the directivity research. Based on the existing experimental conditions, the ring array with 256 elements (256 ring array) is simulated and verified by experiments. The simulation has a spatial resolution evaluation in the k-Wave toolbox, and the experiment uses nylon rope and breast model imaging. The results show that if the sub-aperture size has four elements, the imaging quality is the highest. Specifically, the spatial resolution is the best, and the sound pressure amplitude and signal-to-noise ratio (SNR) are maintained at a high level in the reconstructed image. The optimal sub-aperture theory is verified by the two kinds of ring arrays, which also provide a theoretical basis for the application of the multi-element synthetic aperture focusing technology (M-SAF) in ring arrays.
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Affiliation(s)
- Yang Wu
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Wendong Zhang
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Xingling Shao
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Yuhua Yang
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Tian Zhang
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Miao Lei
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Zhihao Wang
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Bizhen Gao
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
| | - Shumin Hu
- State Key Laboratory of Dynamic Measurement Technology, North University of China, Taiyuan 030051, China
- National Key Laboratory for Electronic Measurement Technology, School of Instrument and Electronics, North University of China, Taiyuan 030051, China
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Analysis of the Refraction Effect in Ultrasound Breast Tomography. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12073578] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Ultrasound breast tomography (UBT) is a promising quantitative imaging method. It allows for precise analysis of ultrasound velocity distribution, which is related to tissue density and elasticity, enabling cancer detection. Only a few centers around the world have a prototype of the device for in vivo breast ultrasound tomography imaging. The quality of images reconstructed from measurements of ultrasound pulse transit times is adversely affected by the refraction of beam rays on the breast immersed in water. Refraction can be reduced using waveform tomography, ray-tracing, and ray-linking methods. However, this requires the acquisition of a pre-reconstructed pattern and is limited by extreme computational costs. In this study, the effect of refraction on transit time measurements of ultrasound passing through the female breast was analyzed under immersion conditions in water. It was found that the refraction causes the highest measurement errors in the area of the water/breast interface, and these can be reduced by adjusting the water temperature and changing the breast geometry. The results allow us to improve the quality of breast images reconstructed using an efficient transformation algorithm that assumes rectilinear ultrasound propagation paths between transmitters and receivers. In vivo breast studies were performed on the developed hybrid UBT scanner.
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Different Types of Ultrasound Probes Usage for Multi-Angle Conventional 3D Ultrasound Compound Imaging: A Breast Phantom Study. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12052689] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Three-dimensional automated breast ultrasound (ABUS) systems seem to offer excellent results in breast cancer screening tests and its early detection, comparable to handheld ultrasound B-mode scanning, with the benefit of saving physician time and reducing handheld ultrasound issues. Nevertheless, the ABUS systems are not very popular, due to the cost and very narrow application. The multi-angle conventional 3D ultrasound compound imaging method (MACUI) is intended for use with standard B-mode scanners in order to reduce cost but preserve the advantages of ABUS systems. The rotational probe movement is utilized in order to collect images for the three-dimensional reconstruction of the scanned tissue’s anatomy. The authors evaluate the capabilities to increase the scanned volume and quality of reconstructions, which are limited in current MACUI implementations, with a probe tilt and shift. The study shows and discusses the results of the imaging using different probes available for SmartUs Telemed B-Mode scanner at different scanning geometry in order to determine the capabilities of such an ultrasound imaging system. The results discussed in the paper highlight the benefits in quality improvement and scanning area obtained with tilted and shifted probes, as well as the advantages of using a relatively simple convex probe that does not incorporate software beam steering over more advanced devices.
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Józefczak A, Kaczmarek K, Bielas R. Magnetic mediators for ultrasound theranostics. Theranostics 2021; 11:10091-10113. [PMID: 34815806 PMCID: PMC8581415 DOI: 10.7150/thno.62218] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 10/02/2021] [Indexed: 12/11/2022] Open
Abstract
The theranostics paradigm is based on the concept of combining therapeutic and diagnostic modalities into one platform to improve the effectiveness of treatment. Combinations of multiple modalities provide numerous medical advantages and are enabled by nano- and micron-sized mediators. Here we review recent advancements in the field of ultrasound theranostics and the use of magnetic materials as mediators. Several subdisciplines are described in detail, including controlled drug delivery and release, ultrasound hyperthermia, magneto-ultrasonic heating, sonodynamic therapy, magnetoacoustic imaging, ultrasonic wave generation by magnetic fields, and ultrasound tomography. The continuous progress and improvement in theranostic materials, methods, and physical computing models have created undeniable possibilities for the development of new approaches. We discuss the prospects of ultrasound theranostics and possible expansions of other studies to the theranostic context.
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Affiliation(s)
- Arkadiusz Józefczak
- Chair of Acoustics, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, 61-614 Poznań, Poland
| | - Katarzyna Kaczmarek
- Department of Biomedical Engineering, Faculty of Engineering, University of Strathclyde, Wolfson Centre, 106 Rottenrow, Glasgow, United Kingdom
| | - Rafał Bielas
- Chair of Acoustics, Faculty of Physics, Adam Mickiewicz University in Poznań, Uniwersytetu Poznańskiego 2, 61-614 Poznań, Poland
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Brandner DM, Cai X, Foiret J, Ferrara KW, Zagar BG. Estimation of Tissue Attenuation from Ultrasonic B-Mode Images-Spectral-Log-Difference and Method-of-Moments Algorithms Compared. SENSORS 2021; 21:s21072548. [PMID: 33916496 PMCID: PMC8038607 DOI: 10.3390/s21072548] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/27/2021] [Revised: 03/31/2021] [Accepted: 04/01/2021] [Indexed: 12/13/2022]
Abstract
We report on results from the comparison of two algorithms designed to estimate the attenuation coefficient from ultrasonic B-mode scans obtained from a numerical phantom simulating an ultrasound breast scan. It is well documented that this parameter significantly diverges between normal tissue and malignant lesions. To improve the diagnostic accuracy it is of great importance to devise and test algorithms that facilitate the accurate, low variance and spatially resolved estimation of the tissue’s attenuation properties. A numerical phantom is realized using k-Wave, which is an open source Matlab toolbox for the time-domain simulation of acoustic wave fields that facilitates both linear and nonlinear wave propagation in homogeneous and heterogeneous tissue, as compared to strictly linear ultrasound simulation tools like Field II. k-Wave allows to simulate arbitrary distributions, resolved down to single voxel sizes, of parameters including the speed of sound, mass density, scattering strength and to include power law acoustic absorption necessary for simulation tasks in medical diagnostic ultrasound. We analyze the properties and the attainable accuracy of both the spectral-log-difference technique, and a statistical moments based approach and compare the results to known reference values from the sound field simulation.
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Affiliation(s)
- Dinah Maria Brandner
- Institute for Measurement Technology, Johannes Kepler University Linz, 4040 Linz, Austria;
- Linz Center of Mechatronics Ltd. (LCM), 4040 Linz, Austria
- Correspondence: ; Tel.: +43-732-2468 (ext. 5921)
| | - Xiran Cai
- Department of Radiology, Stanford University, Palo Alto, CA 94304, USA; (X.C.); (J.F.); (K.W.F.)
| | - Josquin Foiret
- Department of Radiology, Stanford University, Palo Alto, CA 94304, USA; (X.C.); (J.F.); (K.W.F.)
| | - Katherine W. Ferrara
- Department of Radiology, Stanford University, Palo Alto, CA 94304, USA; (X.C.); (J.F.); (K.W.F.)
| | - Bernhard G. Zagar
- Institute for Measurement Technology, Johannes Kepler University Linz, 4040 Linz, Austria;
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Kaczmarek K, Hornowski T, Dobosz B, Józefczak A. Influence of Magnetic Nanoparticles on the Focused Ultrasound Hyperthermia. MATERIALS 2018; 11:ma11091607. [PMID: 30181475 PMCID: PMC6165391 DOI: 10.3390/ma11091607] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Revised: 08/31/2018] [Accepted: 08/31/2018] [Indexed: 01/04/2023]
Abstract
Ultrasound hyperthermia is a medical treatment used to increase temperature of tissues. It can be used independently or as a supportive method for an anticancer treatment. The therapeutic efficacy of focused ultrasound hyperthermia can be improved using sonosensitizers, nanoparticles enhancing the attenuation and dissipation of acoustic energy. As sonosensitizers, we propose magnetic nanoparticles owing to their biodegradability, biocompatibility, and simple positioning in tissues using a magnetic field. Focused ultrasound hyperthermia studies were performed using tissue-mimicking phantoms. Temperature changes were measured at various ultrasound powers and distances from the center of the ultrasound focus. Specific absorption rate (SAR) values, describing the power deposition in the tissues during the hyperthermia treatment, were evaluated for the center of the focus point and for various distances from it. The results show that the addition of nanoparticles increases the SAR almost two times compared to that for the pure phantom. The highest SAR is obtained in the ultrasound focus; it decreases with the increase of the distance from the focus.
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Affiliation(s)
- Katarzyna Kaczmarek
- Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61⁻614 Poznań, Poland.
| | - Tomasz Hornowski
- Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61⁻614 Poznań, Poland.
| | - Bernadeta Dobosz
- Medical Physics Division, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61⁻614 Poznań, Poland.
| | - Arkadiusz Józefczak
- Institute of Acoustics, Faculty of Physics, Adam Mickiewicz University, Umultowska 85, 61⁻614 Poznań, Poland.
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