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Flynn KM, Bush K, Cavallin J, Hazemi M, Kasparek A, Schumann P, Villeneuve DL. Transcriptomic response of an algal species (Raphidocelis subcapitata) exposed to 22 per- and polyfluoroalkyl substances. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2025; 44:995-1006. [PMID: 39832265 DOI: 10.1093/etojnl/vgaf022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 12/09/2024] [Accepted: 12/12/2024] [Indexed: 01/22/2025]
Abstract
Per- and polyfluoroalkyl substances (PFAS) are a large class of chemicals of concern for both human and environmental health because of their ubiquitous presence in the environment, persistence, and potential toxicological effects. Despite this, ecological hazard data are limited to a small number of PFAS although there are over 4,000 identified PFAS. Traditional toxicity testing will likely be inadequate to generate necessary hazard information for risk assessment. Therefore, this study investigated the utility of using transcriptomic points of departure (tPODs) for informing PFAS algal toxicity. Raphidocelis subcapitata, a freshwater green algal species, were exposed for 24 hr in 96-well microplates to multiple concentrations of 22 different PFAS. Following exposure, RNA was extracted, and the transcriptome was evaluated by RNA sequencing followed by concentration response modeling to determine a tPOD for each PFAS. Per- and polyfluoroalkyl substance tPODs, based on measured concentrations, ranged from 0.9 µg/L for perfluorotridecanoic acid to 1 mg/L for perfluorononanoic acid. These values derived from R. subcapitata exposures were compared with published hazard benchmarks from other taxa (larval fathead minnow and Daphnia magna) and in vitro data. Although R. subcapitata was generally more sensitive to the tested PFAS than previously tested taxa and in vitro assays, the algal tPODs were, on average, three orders magnitude greater than the maximum concentrations of PFAS detected in Great Lakes tributaries. This high throughput transcriptomics assay with algae is a promising new approach method for an ecologically relevant tiered hazard evaluation strategy.
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Affiliation(s)
- Kevin M Flynn
- United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
| | - Kendra Bush
- Oak Ridge Institute for Science and Education (ORISE) Research Participant, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
| | - Jenna Cavallin
- United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
| | - Monique Hazemi
- United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Research Triangle Park, NC, United States
| | - Alex Kasparek
- Oak Ridge Institute for Science and Education (ORISE) Research Participant, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
| | - Peter Schumann
- United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
| | - Daniel L Villeneuve
- United States Environmental Protection Agency, Center for Computational Toxicology and Exposure, Great Lakes Toxicology and Ecology Division, Duluth, MN, United States
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2
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Crizer DM, Rice JR, Smeltz MG, Lavrich KS, Ravindra K, Wambaugh JF, DeVito M, Wetmore BA. In Vitro Hepatic Clearance Evaluations of Per- and Polyfluoroalkyl Substances (PFAS) across Multiple Structural Categories. TOXICS 2024; 12:672. [PMID: 39330600 PMCID: PMC11435625 DOI: 10.3390/toxics12090672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 09/06/2024] [Accepted: 09/10/2024] [Indexed: 09/28/2024]
Abstract
Toxicokinetic (TK) assays and in vitro-in vivo extrapolation (IVIVE) models are New Approach Methods (NAMs) used to translate in vitro points of departure to exposure estimates required to reach equivalent blood concentrations. Per- and polyfluoroalkyl substances (PFAS) are a large chemical class with wide-ranging industrial applications for which only limited toxicity data are available for human health evaluation. To address the lack of TK data, a pooled primary human hepatocyte suspension model was used with targeted liquid chromatography-mass spectrometry to investigate substrate depletion for 54 PFAS. A median value of 4.52 μL/(min x million cells) was observed across those that showed significant clearance, with 35 displaying no substrate depletion. Bayesian modeling propagated uncertainty around clearance values for use in IVIVE models. Structural evaluations showed the fluorotelomer carboxylic acids were the only PFAS carboxylates showing appreciable clearance, and per- and polyfluorosulfonamides were more readily metabolized than other PFAS sulfonates. Biotransformation product prediction, using the chemical transformation simulator, suggested hydrolysis of PFAS sulfonamides to more stable sulfonic acids, which is an important consideration for exposure modeling. This effort greatly expands the PFAS in vitro toxicokinetic dataset, enabling refined TK modeling, in silico tool development, and NAM-based human health evaluations across this important set of emerging contaminants.
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Affiliation(s)
- David M Crizer
- Division of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27711, USA
| | - Julie R Rice
- Division of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27711, USA
| | - Marci G Smeltz
- Center for Public Health and Environmental Assessment, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC 27711, USA
| | - Katelyn S Lavrich
- Division of Translational Toxicology, National Institute of Environmental Health Sciences, Research Triangle Park, NC 27711, USA
| | | | - John F Wambaugh
- Center for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC 27711, USA
| | - Michael DeVito
- Center for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC 27711, USA
| | - Barbara A Wetmore
- Center for Computational Toxicology and Exposure, Office of Research and Development, US Environmental Protection Agency, Research Triangle Park, NC 27711, USA
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Ford LC, Lin HC, Zhou YH, Wright FA, Gombar VK, Sedykh A, Shah RR, Chiu WA, Rusyn I. Characterizing PFAS hazards and risks: a human population-based in vitro cardiotoxicity assessment strategy. Hum Genomics 2024; 18:92. [PMID: 39218963 PMCID: PMC11368000 DOI: 10.1186/s40246-024-00665-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 08/20/2024] [Indexed: 09/04/2024] Open
Abstract
Per- and poly-fluoroalkyl substances (PFAS) are emerging contaminants of concern because of their wide use, persistence, and potential to be hazardous to both humans and the environment. Several PFAS have been designated as substances of concern; however, most PFAS in commerce lack toxicology and exposure data to evaluate their potential hazards and risks. Cardiotoxicity has been identified as a likely human health concern, and cell-based assays are the most sensible approach for screening and prioritization of PFAS. Human-induced pluripotent stem cell (iPSC)-derived cardiomyocytes are a widely used method to test for cardiotoxicity, and recent studies showed that many PFAS affect these cells. Because iPSC-derived cardiomyocytes are available from different donors, they also can be used to quantify human variability in responses to PFAS. The primary objective of this study was to characterize potential human cardiotoxic hazard, risk, and inter-individual variability in responses to PFAS. A total of 56 PFAS from different subclasses were tested in concentration-response using human iPSC-derived cardiomyocytes from 16 donors without known heart disease. Kinetic calcium flux and high-content imaging were used to evaluate biologically-relevant phenotypes such as beat frequency, repolarization, and cytotoxicity. Of the tested PFAS, 46 showed concentration-response effects in at least one phenotype and donor; however, a wide range of sensitivities were observed across donors. Inter-individual variability in the effects could be quantified for 19 PFAS, and risk characterization could be performed for 20 PFAS based on available exposure information. For most tested PFAS, toxicodynamic variability was within a factor of 10 and the margins of exposure were above 100. This study identified PFAS that may pose cardiotoxicity risk and have high inter-individual variability. It also demonstrated the feasibility of using a population-based human in vitro method to quantify population variability and identify cardiotoxicity risks of emerging contaminants.
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Affiliation(s)
- Lucie C Ford
- Department of Veterinary Physiology and Pharmacology, TAMU 4466, Texas A&M University, College Station, TX, 77843-4466, USA
| | - Hsing-Chieh Lin
- Department of Veterinary Physiology and Pharmacology, TAMU 4466, Texas A&M University, College Station, TX, 77843-4466, USA
| | - Yi-Hui Zhou
- Department of Biological Sciences and Statistics, North Carolina State University, Raleigh, NC, 27695, USA
- Bioinformatics Research Center, North Carolina State University, Raleigh, NC, 27695, USA
| | - Fred A Wright
- Department of Biological Sciences and Statistics, North Carolina State University, Raleigh, NC, 27695, USA
- Bioinformatics Research Center, North Carolina State University, Raleigh, NC, 27695, USA
| | | | | | | | - Weihsueh A Chiu
- Department of Veterinary Physiology and Pharmacology, TAMU 4466, Texas A&M University, College Station, TX, 77843-4466, USA
| | - Ivan Rusyn
- Department of Veterinary Physiology and Pharmacology, TAMU 4466, Texas A&M University, College Station, TX, 77843-4466, USA.
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4
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Britton KN, Judson RS, Hill BN, Jarema KA, Olin JK, Knapp BR, Lowery M, Feshuk M, Brown J, Padilla S. Using Zebrafish to Screen Developmental Toxicity of Per- and Polyfluoroalkyl Substances (PFAS). TOXICS 2024; 12:501. [PMID: 39058153 PMCID: PMC11281043 DOI: 10.3390/toxics12070501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Revised: 07/01/2024] [Accepted: 07/02/2024] [Indexed: 07/28/2024]
Abstract
Per- and polyfluoroalkyl substances (PFAS) are found in many consumer and industrial products. While some PFAS, notably perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS), are developmentally toxic in mammals, the vast majority of PFAS have not been evaluated for developmental toxicity potential. A concentration-response study of 182 unique PFAS chemicals using the zebrafish medium-throughput, developmental vertebrate toxicity assay was conducted to investigate chemical structural identifiers for toxicity. Embryos were exposed to each PFAS compound (≤100 μM) beginning on the day of fertilization. At 6 days post-fertilization (dpf), two independent observers graded developmental landmarks for each larva (e.g., mortality, hatching, swim bladder inflation, edema, abnormal spine/tail, or craniofacial structure). Thirty percent of the PFAS were developmentally toxic, but there was no enrichment of any OECD structural category. PFOS was developmentally toxic (benchmark concentration [BMC] = 7.48 μM); however, other chemicals were more potent: perfluorooctanesulfonamide (PFOSA), N-methylperfluorooctane sulfonamide (N-MeFOSA), ((perfluorooctyl)ethyl)phosphonic acid, perfluoro-3,6,9-trioxatridecanoic acid, and perfluorohexane sulfonamide. The developmental toxicity profile for these more potent PFAS is largely unexplored in mammals and other species. Based on these zebrafish developmental toxicity results, additional screening may be warranted to understand the toxicity profile of these chemicals in other species.
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Affiliation(s)
- Katy N. Britton
- Oak Ridge Associated Universities Research Participation Program Hosted by EPA, Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA
| | - Richard S. Judson
- Center for Computational Toxicology and Exposure, Computational Toxicology and Bioinformatics Branch, Research Triangle Park, NC 27711, USA;
| | - Bridgett N. Hill
- Oak Ridge Institute for Science and Education Research Participation Program Hosted by EPA, Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA; (B.N.H.); (B.R.K.)
| | - Kimberly A. Jarema
- Center for Public Health and Environmental Assessment, Immediate Office, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA;
| | - Jeanene K. Olin
- Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA; (J.K.O.); (M.L.)
| | - Bridget R. Knapp
- Oak Ridge Institute for Science and Education Research Participation Program Hosted by EPA, Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA; (B.N.H.); (B.R.K.)
| | - Morgan Lowery
- Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA; (J.K.O.); (M.L.)
| | - Madison Feshuk
- Center for Computational Toxicology and Exposure, Scientific Computing and Data Curation Division, Data Extraction and Quality Evaluation Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA;
| | - Jason Brown
- Center for Computational Toxicology and Exposure, Scientific Computing and Data Curation Division, Application Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA;
| | - Stephanie Padilla
- Center for Computational Toxicology and Exposure, Biomolecular and Computational Toxicology Division, Rapid Assay Development Branch, U.S. Environmental Protection Agency, Research Triangle Park, NC 27711, USA; (J.K.O.); (M.L.)
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5
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Su A, Cheng Y, Zhang C, Yang YF, She YB, Rajan K. An artificial intelligence platform for automated PFAS subgroup classification: A discovery tool for PFAS screening. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 921:171229. [PMID: 38402985 DOI: 10.1016/j.scitotenv.2024.171229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 01/27/2024] [Accepted: 02/21/2024] [Indexed: 02/27/2024]
Abstract
Since structural analyses and toxicity assessments have not been able to keep up with the discovery of unknown per- and polyfluoroalkyl substances (PFAS), there is an urgent need for effective categorization and grouping of PFAS. In this study, we presented PFAS-Atlas, an artificial intelligence-based platform containing a rule-based automatic classification system and a machine learning-based grouping model. Compared with previously developed classification software, the platform's classification system follows the latest Organization for Economic Co-operation and Development (OECD) definition of PFAS and reduces the number of uncategorized PFAS. In addition, the platform incorporates deep unsupervised learning models to visualize the chemical space of PFAS by clustering similar structures and linking related classes. Through real-world use cases, we demonstrate that PFAS-Atlas can rapidly screen for relationships between chemical structure and persistence, bioaccumulation, or toxicity data for PFAS. The platform can also guide the planning of the PFAS testing strategy by showing which PFAS classes urgently require further attention. Ultimately, the release of PFAS-Atlas will benefit both the PFAS research and regulation communities.
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Affiliation(s)
- An Su
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, Key Laboratory of Green Chemistry-Synthesis Technology of Zhejiang Province, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China; Key Laboratory of Pharmaceutical Engineering of Zhejiang Province, Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, PR China.
| | - Yingying Cheng
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, Key Laboratory of Green Chemistry-Synthesis Technology of Zhejiang Province, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China; Key Laboratory of Pharmaceutical Engineering of Zhejiang Province, Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, PR China
| | - Chengwei Zhang
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, Key Laboratory of Green Chemistry-Synthesis Technology of Zhejiang Province, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
| | - Yun-Fang Yang
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, Key Laboratory of Green Chemistry-Synthesis Technology of Zhejiang Province, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China
| | - Yuan-Bin She
- State Key Laboratory Breeding Base of Green Chemistry-Synthesis Technology, Key Laboratory of Green Chemistry-Synthesis Technology of Zhejiang Province, College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China.
| | - Krishna Rajan
- Department of Materials Design and Innovation, University at Buffalo, Buffalo, NY 14260-1660, United States.
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6
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Villeneuve DL, Blackwell BR, Bush K, Harrill J, Harris F, Hazemi M, Le M, Stacy E, Flynn KM. Transcriptomics-Based Points of Departure for Daphnia magna Exposed to 18 Per- and Polyfluoroalkyl Substances. ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY 2024. [PMID: 38450772 DOI: 10.1002/etc.5838] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Revised: 01/08/2024] [Accepted: 01/27/2024] [Indexed: 03/08/2024]
Abstract
Per- and polyfluoroalkyl substances (PFAS) represent a large group of contaminants of concern based on their widespread use, environmental persistence, and potential toxicity. Many traditional models for estimating toxicity, bioaccumulation, and other toxicological properties are not well suited for PFAS. Consequently, there is a need to generate hazard information for PFAS in an efficient and cost-effective manner. In the present study, Daphnia magna were exposed to multiple concentrations of 22 different PFAS for 24 h in a 96-well plate format. Following exposure, whole-body RNA was extracted and extracts, each representing five exposed individuals, were subjected to RNA sequencing. Following analytical measurements to verify PFAS exposure concentrations and quality control on processed cDNA libraries for sequencing, concentration-response modeling was applied to the data sets for 18 of the tested compounds, and the concentration at which a concerted molecular response occurred (transcriptomic point of departure; tPOD) was calculated. The tPODs, based on measured concentrations of PFAS, generally ranged from 0.03 to 0.58 µM (9.9-350 µg/L; interquartile range). In most cases, these concentrations were two orders of magnitude lower than similarly calculated tPODs for human cell lines exposed to PFAS. They were also lower than apical effect concentrations reported for seven PFAS for which some crustacean or invertebrate toxicity data were available, although there were a few exceptions. Despite being lower than most other available hazard benchmarks, D. magna tPODs were, on average, four orders of magnitude greater than the maximum aqueous concentrations of PFAS measured in Great Lakes tributaries. Overall, this high-throughput transcriptomics assay with D. magna holds promise as a component of a tiered hazard evaluation strategy employing new approach methodologies. Environ Toxicol Chem 2024;00:1-16. © 2024 SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.
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Affiliation(s)
- Daniel L Villeneuve
- Great Lakes Toxicology and Ecology Division, US Environmental Protection Agency, Duluth, MN, USA
| | - Brett R Blackwell
- Great Lakes Toxicology and Ecology Division, US Environmental Protection Agency, Duluth, MN, USA
- Bioscience Division, Biochemistry and Biotechnology Group, Los Alamos National Laboratory, Los Alamos, NM, USA
| | - Kendra Bush
- Oak Ridge Institute for Science and Education Research Participant at US EPA, Great Lakes Toxicology and Ecology Division, Duluth, MN, USA
| | - Joshua Harrill
- Biomolecular and Computational Toxicology Division, United States Environmental Protection Agency, NC, USA
| | - Felix Harris
- Oak Ridge Institute for Science and Education Research Participant at US EPA, Biomolecular and Computational Toxicology Division, Oak Ridge, NC, USA
| | - Monique Hazemi
- Oak Ridge Institute for Science and Education Research Participant at US EPA, Great Lakes Toxicology and Ecology Division, Duluth, MN, USA
| | - Michelle Le
- Oak Ridge Institute for Science and Education Research Participant at US EPA, Great Lakes Toxicology and Ecology Division, Duluth, MN, USA
| | - Emma Stacy
- Great Lakes Toxicology and Ecology Division, US Environmental Protection Agency, Duluth, MN, USA
| | - Kevin M Flynn
- Great Lakes Toxicology and Ecology Division, US Environmental Protection Agency, Duluth, MN, USA
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Degitz SJ, Olker JH, Denny JS, Degoey PP, Hartig PC, Cardon MC, Eytcheson SA, Haselman JT, Mayasich SA, Hornung MW. In vitro screening of per- and polyfluorinated substances (PFAS) for interference with seven thyroid hormone system targets across nine assays. Toxicol In Vitro 2024; 95:105762. [PMID: 38072180 PMCID: PMC11081714 DOI: 10.1016/j.tiv.2023.105762] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 10/31/2023] [Accepted: 12/05/2023] [Indexed: 12/30/2023]
Abstract
The US Environmental Protection Agency is evaluating the ecological and toxicological effects of per- and polyfluorinated chemicals. A number of perfluorinated chemicals have been shown to impact the thyroid axis in vivo suggesting that the thyroid hormone system is a target of these chemicals. The objective of this study was to evaluate the activity of 136 perfluorinated chemicals at seven key molecular initiating events (MIE) within the thyroid axis using nine in vitro assays. The potential MIE targets investigated are Human Iodothyronine Deiodinase 1 (hDIO1), Human Iodothyronine Deiodinase 2 (hDIO2), Human Iodothyronine Deiodinase 3 (hDIO3), Xenopus Iodothyronine Deiodinase (xDIO3); Human Iodotyrosine Deiodinase (hIYD), Xenopus Iodotyrosine Deiodinase (xIYD), Human Thyroid Peroxidase (hTPO); and the serum binding proteins Human Transthyretin (hTTR) and Human Thyroxine Binding Globulin (hTBG). Of the 136 PFAS chemicals tested, 85 had sufficient activity to produce a half-maximal effect concentration (EC50) in at least one of the nine assays. In general, most of these PFAS chemicals did not have strong potency towards the seven MIEs examined, apart from transthyretin binding, for which several PFAS had potency similar to the respective model inhibitor. These data sets identify potentially active PFAS chemicals to prioritize for further testing in orthogonal in vitro assays and at higher levels of biological organization to evaluate their capacity for altering the thyroid hormone system and causing potential adverse health and ecological effects.
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Affiliation(s)
- Sigmund J Degitz
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA.
| | - Jennifer H Olker
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA
| | - Jeffery S Denny
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA
| | - Philip P Degoey
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA
| | - Phillip C Hartig
- US Environmental Protection Agency, Office of Research and Development Center for Public Health and Environmental Assessment, Public Health and Integrated Toxicology Division, Research Triangle Park, NC 27709, USA
| | - Mary C Cardon
- US Environmental Protection Agency, Office of Research and Development Center for Public Health and Environmental Assessment, Public Health and Integrated Toxicology Division, Research Triangle Park, NC 27709, USA
| | - Stephanie A Eytcheson
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA; Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA
| | - Jonathan T Haselman
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA
| | - Sally A Mayasich
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA; Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA
| | - Michael W Hornung
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure (CCTE), Great Lakes Toxicology and Ecology Division (GLTED), Duluth, MN 55804, USA
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8
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Ford LC, Lin HC, Tsai HHD, Zhou YH, Wright FA, Sedykh A, Shah RR, Chiu WA, Rusyn I. Hazard and risk characterization of 56 structurally diverse PFAS using a targeted battery of broad coverage assays using six human cell types. Toxicology 2024; 503:153763. [PMID: 38423244 PMCID: PMC11214689 DOI: 10.1016/j.tox.2024.153763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Revised: 02/13/2024] [Accepted: 02/23/2024] [Indexed: 03/02/2024]
Abstract
Per- and poly-fluoroalkyl substances (PFAS) are extensively used in commerce leading to their prevalence in the environment. Due to their chemical stability, PFAS are considered to be persistent and bioaccumulative; they are frequently detected in both the environment and humans. Because of this, PFAS as a class (composed of hundreds to thousands of chemicals) are contaminants of very high concern. Little information is available for the vast majority of PFAS, and regulatory agencies lack safety data to determine whether exposure limits or restrictions are needed. Cell-based assays are a pragmatic approach to inform decision-makers on potential health hazards; therefore, we hypothesized that a targeted battery of human in vitro assays can be used to determine whether there are structure-bioactivity relationships for PFAS, and to characterize potential risks by comparing bioactivity (points of departure) to exposure estimates. We tested 56 PFAS from 8 structure-based subclasses in concentration response (0.1-100 μM) using six human cell types selected from target organs with suggested adverse effects of PFAS - human induced pluripotent stem cell (iPSC)-derived hepatocytes, neurons, and cardiomyocytes, primary human hepatocytes, endothelial and HepG2 cells. While many compounds were without effect; certain PFAS demonstrated cell-specific activity highlighting the necessity of using a compendium of in vitro models to identify potential hazards. No class-specific groupings were evident except for some chain length- and structure-related trends. In addition, margins of exposure (MOE) were derived using empirical and predicted exposure data. Conservative MOE calculations showed that most tested PFAS had a MOE in the 1-100 range; ∼20% of PFAS had MOE<1, providing tiered priorities for further studies. Overall, we show that a compendium of human cell-based models can be used to derive bioactivity estimates for a range of PFAS, enabling comparisons with human biomonitoring data. Furthermore, we emphasize that establishing structure-bioactivity relationships may be challenging for the tested PFAS.
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Affiliation(s)
- Lucie C Ford
- Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX 77843, USA
| | - Hsing-Chieh Lin
- Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX 77843, USA
| | - Han-Hsuan D Tsai
- Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX 77843, USA
| | - Yi-Hui Zhou
- Department of Biological Sciences and Statistics, North Carolina State University, Raleigh, NC 27695, USA; Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, USA
| | - Fred A Wright
- Department of Biological Sciences and Statistics, North Carolina State University, Raleigh, NC 27695, USA; Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, USA
| | | | | | - Weihsueh A Chiu
- Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX 77843, USA
| | - Ivan Rusyn
- Department of Veterinary Physiology and Pharmacology, Texas A&M University, College Station, TX 77843, USA.
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9
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Shirke AV, Radke EG, Lin C, Blain R, Vetter N, Lemeris C, Hartman P, Hubbard H, Angrish M, Arzuaga X, Congleton J, Davis A, Dishaw LV, Jones R, Judson R, Kaiser JP, Kraft A, Lizarraga L, Noyes PD, Patlewicz G, Taylor M, Williams AJ, Thayer KA, Carlson LM. Expanded Systematic Evidence Map for Hundreds of Per- and Polyfluoroalkyl Substances (PFAS) and Comprehensive PFAS Human Health Dashboard. ENVIRONMENTAL HEALTH PERSPECTIVES 2024; 132:26001. [PMID: 38319881 PMCID: PMC10846678 DOI: 10.1289/ehp13423] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Revised: 01/03/2024] [Accepted: 01/04/2024] [Indexed: 02/08/2024]
Abstract
BACKGROUND Per- and polyfluoroalkyl substances (PFAS) encompass a class of chemically and structurally diverse compounds that are extensively used in industry and detected in the environment. The US Environmental Protection Agency (US EPA) 2021 PFAS Strategic Roadmap describes national research plans to address the challenge of PFAS. OBJECTIVES Systematic Evidence Map (SEM) methods were used to survey and summarize available epidemiological and mammalian bioassay evidence that could inform human health hazard identification for a set of 345 PFAS that were identified by the US EPA's Center for Computational Toxicology and Exposure (CCTE) for in vitro toxicity and toxicokinetic assay testing and through interagency discussions on PFAS of interest. This work builds from the 2022 evidence map that collated evidence on a separate set of ∼ 150 PFAS. Like our previous work, this SEM does not include PFAS that are the subject of ongoing or completed assessments at the US EPA. METHODS SEM methods were used to search, screen, and inventory mammalian bioassay and epidemiological literature from peer-reviewed and gray literature sources using manual review and machine-learning software. For each included study, study design details and health end points examined were summarized in interactive web-based literature inventories. Some included studies also underwent study evaluation and detailed extraction of health end point data. All underlying data is publicly available online as interactive visuals with downloadable metadata. RESULTS More than 13,000 studies were identified from scientific databases. Screening processes identified 121 mammalian bioassay and 111 epidemiological studies that met screening criteria. Epidemiological evidence (available for 12 PFAS) mostly assessed the reproductive, endocrine, developmental, metabolic, cardiovascular, and immune systems. Mammalian bioassay evidence (available for 30 PFAS) commonly assessed effects in the reproductive, whole-body, nervous, and hepatic systems. Overall, 41 PFAS had evidence across mammalian bioassay and epidemiology data streams (roughly 11% of searched chemicals). DISCUSSION No epidemiological and/or mammalian bioassay evidence were identified for most of the PFAS included in our search. Results from this SEM, our 2022 SEM on ∼ 150 PFAS, and other PFAS assessment products from the US EPA are compiled into a comprehensive PFAS dashboard that provides researchers and regulators an overview of the current PFAS human health landscape including data gaps and can serve as a scoping tool to facilitate prioritization of PFAS-related research and/or risk assessment activities. https://doi.org/10.1289/EHP13423.
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Affiliation(s)
- Avanti V. Shirke
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | - Elizabeth G. Radke
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | | | | | | | | | | | | | | | - Xabier Arzuaga
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | - Johanna Congleton
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | - Allen Davis
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | | | - Ryan Jones
- Center for Public Health and Environmental Assessment, Health & Environmental Effects Assessment Division (HEEAD), US EPA, Durham, North Carolina, USA
| | - Richard Judson
- Center for Computational Toxicology and Exposure (CCTE), US EPA, Durham, North Carolina, USA
| | | | - Andrew Kraft
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | | | - Pamela D. Noyes
- Center for Public Health and Environmental Assessment, Chemical & Pollutant Assessment Division (CPAD), US Environmental Protection Agency (US EPA), Washington, DC, USA
| | - Grace Patlewicz
- Center for Computational Toxicology and Exposure (CCTE), US EPA, Durham, North Carolina, USA
| | | | - Antony J. Williams
- Center for Computational Toxicology and Exposure (CCTE), US EPA, Durham, North Carolina, USA
| | | | - Laura M. Carlson
- Center for Public Health and Environmental Assessment, Health & Environmental Effects Assessment Division (HEEAD), US EPA, Durham, North Carolina, USA
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10
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Burkhardt JB, Cadwallader A, Pressman JG, Magnuson ML, Williams AJ, Sinclair G, Speth TF. Polanyi adsorption potential theory for estimating PFAS treatment with granular activated carbon. JOURNAL OF WATER PROCESS ENGINEERING 2023; 53:1-10. [PMID: 37234354 PMCID: PMC10208310 DOI: 10.1016/j.jwpe.2023.103691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Per- and polyfluoroalkyl substances (PFAS) are a group of chemicals that have gained interest because some PFAS have been shown to have negative health effects and prolonged environmental and biological persistence. Chemicals classified as PFAS have a wide range of chemical moieties that impart widely variable properties, leading to a range of water treatment process efficacies. The Polanyi Potential Adsorption Theory was used to estimate Freundlich isotherm parameters to predict the efficacy of granular activated carbon (GAC) treatment for 428 PFAS chemicals for which the vast majority had no previously published treatment data. This method accounts for the physical/chemical characteristics of the individual PFAS beyond molecular weight or chain length that have previously been employed. From a statistical analysis of available data and model results, many of the 428 PFAS were predicted to be effectively treatable by GAC. Although not directly applicable to full-scale design, the approach demonstrates a systematic method for predicting the effectiveness of GAC where isotherm or column data are not available. This then can be used to prioritize future research.
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Affiliation(s)
- Jonathan B. Burkhardt
- US Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA
| | - Adam Cadwallader
- US Environmental Protection Agency, Office of Ground Water and Drinking Water, Washington, DC 20460, USA
| | - Jonathan G. Pressman
- US Environmental Protection Agency, Office of Research and Development, OH 45268, USA
| | - Matthew L. Magnuson
- US Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA
| | - Antony J. Williams
- US Environmental Protection Agency, Office of Research and Development, Research Triangle Park, NC 27711, USA
| | - Gabriel Sinclair
- Syngenta (formerly at, National Student Services Contractor, Oak Ridge Associated Universities, Research Triangle Park, NC 27711, USA)
| | - Thomas F. Speth
- US Environmental Protection Agency, Office of Research and Development, Cincinnati, OH 45268, USA
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11
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Smeltz M, Wambaugh JF, Wetmore BA. Plasma Protein Binding Evaluations of Per- and Polyfluoroalkyl Substances for Category-Based Toxicokinetic Assessment. Chem Res Toxicol 2023; 36:870-881. [PMID: 37184865 PMCID: PMC10506455 DOI: 10.1021/acs.chemrestox.3c00003] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
New approach methodologies (NAMs) that make use of in vitro screening and in silico approaches to inform chemical evaluations rely on in vitro toxicokinetic (TK) data to translate in vitro bioactive concentrations to exposure metrics reflective of administered dose. With 1364 per- and polyfluoroalkyl substances (PFAS) identified as of interest under Section 8 of the U.S. Toxic Substances Control Act (TSCA) and concern over the lack of knowledge regarding environmental persistence, human health, and ecological effects, the utility of NAMs to understand potential toxicities and toxicokinetics across these data-poor compounds is being evaluated. To address the TK data deficiency, 71 PFAS selected to span a wide range of functional groups and physico-chemical properties were evaluated for in vitro human plasma protein binding (PPB) by ultracentrifugation with liquid chromatography-mass spectrometry analysis. For the 67 PFAS successfully evaluated by ultracentrifugation, fraction unbound in plasma (fup) ranged from less than 0.0001 (pentadecafluorooctanoyl chloride) to 0.7302 (tetrafluorosuccinic acid), with over half of the PFAS showing PPB exceeding 99.5% (fup < 0.005). Category-based evaluations revealed that perfluoroalkanoyl chlorides and perfluorinated carboxylates (PFCAs) with 6-10 carbons were the highest bound, with similar median values for alkyl, ether, and polyether PFCAs. Interestingly, binding was lower for the PFCAs with a carbon chain length of ≥11. Lower binding also was noted for fluorotelomer carboxylic acids when compared to their carbon-equivalent perfluoroalkyl acids. Comparisons of the fup value derived using two PPB methods, ultracentrifugation or rapid equilibrium dialysis (RED), revealed RED failure for a subset of PFAS of high mass and/or predicted octanol-water partition coefficients exceeding 4 due to failure to achieve equilibrium. Bayesian modeling was used to provide uncertainty bounds around fup point estimates for incorporation into TK modeling. This PFAS PPB evaluation and grouping exercise across 67 structures greatly expand our current knowledge and will aid in PFAS NAM development.
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Affiliation(s)
- Marci Smeltz
- Center for Computational Toxicology and Exposure, US EPA Office of Research and Development, Research Triangle Park, NC 27711, USA
- Current Affiliation: Center for Environmental Measurement and Modeling; Research Triangle Park, NC, 27711, USA
| | - John F. Wambaugh
- Center for Computational Toxicology and Exposure, US EPA Office of Research and Development, Research Triangle Park, NC 27711, USA
| | - Barbara A. Wetmore
- Center for Computational Toxicology and Exposure, US EPA Office of Research and Development, Research Triangle Park, NC 27711, USA
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12
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Kreutz A, Clifton MS, Henderson WM, Smeltz MG, Phillips M, Wambaugh JF, Wetmore BA. Category-Based Toxicokinetic Evaluations of Data-Poor Per- and Polyfluoroalkyl Substances (PFAS) using Gas Chromatography Coupled with Mass Spectrometry. TOXICS 2023; 11:toxics11050463. [PMID: 37235277 DOI: 10.3390/toxics11050463] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Revised: 04/28/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023]
Abstract
Concern over per- and polyfluoroalkyl substances (PFAS) has increased as more is learned about their environmental presence, persistence, and bioaccumulative potential. The limited monitoring, toxicokinetic (TK), and toxicologic data available are inadequate to inform risk across this diverse domain. Here, 73 PFAS were selected for in vitro TK evaluation to expand knowledge across lesser-studied PFAS alcohols, amides, and acrylates. Targeted methods developed using gas chromatography-tandem mass spectrometry (GC-MS/MS) were used to measure human plasma protein binding and hepatocyte clearance. Forty-three PFAS were successfully evaluated in plasma, with fraction unbound (fup) values ranging from 0.004 to 1. With a median fup of 0.09 (i.e., 91% bound), these PFAS are highly bound but exhibit 10-fold lower binding than legacy perfluoroalkyl acids recently evaluated. Thirty PFAS evaluated in the hepatocyte clearance assay showed abiotic loss, with many exceeding 60% loss within 60 min. Metabolic clearance was noted for 11 of the 13 that were successfully evaluated, with rates up to 49.9 μL/(min × million cells). The chemical transformation simulator revealed potential (bio)transformation products to consider. This effort provides critical information to evaluate PFAS for which volatility, metabolism, and other routes of transformation are likely to modulate their environmental fates.
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Affiliation(s)
- Anna Kreutz
- Oak Ridge Institute for Science and Education, 1299 Bethel Valley Road, Oak Ridge, TN 37830, USA
| | - Matthew S Clifton
- US Environmental Protection Agency, Office of Research and Development, Center for Environmental Measurement and Modeling, Research Triangle Park, NC 27711, USA
| | - W Matthew Henderson
- US Environmental Protection Agency, Office of Research and Development, Center for Environmental Measurement and Modeling, Athens, GA 30605, USA
| | - Marci G Smeltz
- US Environmental Protection Agency, Office of Research and Development, Center for Environmental Measurement and Modeling, Research Triangle Park, NC 27711, USA
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure, Research Triangle Park, NC 27711, USA
| | - Matthew Phillips
- Oak Ridge Associated Universities, 100 ORAU Way, Oak Ridge, TN 37830, USA
| | - John F Wambaugh
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure, Research Triangle Park, NC 27711, USA
| | - Barbara A Wetmore
- US Environmental Protection Agency, Office of Research and Development, Center for Computational Toxicology and Exposure, Research Triangle Park, NC 27711, USA
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13
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Carstens KE, Freudenrich T, Wallace K, Choo S, Carpenter A, Smeltz M, Clifton MS, Henderson WM, Richard AM, Patlewicz G, Wetmore BA, Paul Friedman K, Shafer T. Evaluation of Per- and Polyfluoroalkyl Substances (PFAS) In Vitro Toxicity Testing for Developmental Neurotoxicity. Chem Res Toxicol 2023; 36:402-419. [PMID: 36821828 PMCID: PMC10249374 DOI: 10.1021/acs.chemrestox.2c00344] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Per- and polyfluoroalkyl substances (PFAS) are a diverse set of commercial chemicals widely detected in humans and the environment. However, only a limited number of PFAS are associated with epidemiological or experimental data for hazard identification. To provide developmental neurotoxicity (DNT) hazard information, the work herein employed DNT new approach methods (NAMs) to generate in vitro screening data for a set of 160 PFAS. The DNT NAMs battery was comprised of the microelectrode array neuronal network formation assay (NFA) and high-content imaging (HCI) assays to evaluate proliferation, apoptosis, and neurite outgrowth. The majority of PFAS (118/160) were inactive or equivocal in the DNT NAMs, leaving 42 active PFAS that decreased measures of neural network connectivity and neurite length. Analytical quality control indicated 43/118 inactive PFAS samples and 10/42 active PFAS samples were degraded; as such, careful interpretation is required as some negatives may have been due to loss of the parent PFAS, and some actives may have resulted from a mixture of parent and/or degradants of PFAS. PFAS containing a perfluorinated carbon (C) chain length ≥8, a high C:fluorine ratio, or a carboxylic acid moiety were more likely to be bioactive in the DNT NAMs. Of the PFAS positives in DNT NAMs, 85% were also active in other EPA ToxCast assays, whereas 79% of PFAS inactives in the DNT NAMs were active in other assays. These data demonstrate that a subset of PFAS perturb neurodevelopmental processes in vitro and suggest focusing future studies of DNT on PFAS with certain structural feature descriptors.
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Affiliation(s)
- Kelly E Carstens
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Theresa Freudenrich
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Kathleen Wallace
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Seline Choo
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, Tennessee 37830, United States
| | - Amy Carpenter
- Oak Ridge Institute for Science and Education (ORISE), Oak Ridge, Tennessee 37830, United States
| | - Marci Smeltz
- Center for Environmental Measurement and Modeling, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Matthew S Clifton
- Center for Environmental Measurement and Modeling, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - W Matthew Henderson
- Center for Environmental Measurement and Modeling, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Ann M Richard
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Grace Patlewicz
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Barbara A Wetmore
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Katie Paul Friedman
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
| | - Timothy Shafer
- Center for Computational Toxicology and Exposure, ORD, US EPA, Research Triangle Park, North Carolina 27711, United States
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14
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Richard AM, Lougee R, Adams M, Hidle H, Yang C, Rathman J, Magdziarz T, Bienfait B, Williams AJ, Patlewicz G. A New CSRML Structure-Based Fingerprint Method for Profiling and Categorizing Per- and Polyfluoroalkyl Substances (PFAS). Chem Res Toxicol 2023; 36:508-534. [PMID: 36862450 PMCID: PMC10031568 DOI: 10.1021/acs.chemrestox.2c00403] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Indexed: 03/03/2023]
Abstract
The term PFAS encompasses diverse per- and polyfluorinated alkyl (and increasingly aromatic) chemicals spanning industrial processes, commercial uses, environmental occurrence, and potential concerns. With increased chemical curation, currently exceeding 14,000 structures in the PFASSTRUCTV5 inventory on EPA's CompTox Chemicals Dashboard, has come increased motivation to profile, categorize, and analyze the PFAS structure space using modern cheminformatics approaches. Making use of the publicly available ToxPrint chemotypes and ChemoTyper application, we have developed a new PFAS-specific fingerprint set consisting of 129 TxP_PFAS chemotypes coded in CSRML, a chemical-based XML-query language. These are split into two groups, the first containing 56 mostly bond-type ToxPrints modified to incorporate attachment to either a CF group or F atom to enforce proximity to the fluorinated portion of the chemical. This focus resulted in a dramatic reduction in TxP_PFAS chemotype counts relative to the corresponding ToxPrint counts (averaging 54%). The remaining TxP_PFAS chemotypes consist of various lengths and types of fluorinated chains, rings, and bonding patterns covering indications of branching, alternate halogenation, and fluorotelomers. Both groups of chemotypes are well represented across the PFASSTRUCT inventory. Using the ChemoTyper application, we show how the TxP_PFAS chemotypes can be visualized, filtered, and used to profile the PFASSTRUCT inventory, as well as to construct chemically intuitive, structure-based PFAS categories. Lastly, we used a selection of expert-based PFAS categories from the OECD Global PFAS list to evaluate a small set of analogous structure-based TxP_PFAS categories. TxP_PFAS chemotypes were able to recapitulate the expert-based PFAS category concepts based on clearly defined structure rules that can be computationally implemented and reproducibly applied to process large PFAS inventories without need to consult an expert. The TxP_PFAS chemotypes have the potential to support computational modeling, harmonize PFAS structure-based categories, facilitate communication, and allow for more efficient and chemically informed exploration of PFAS chemicals moving forward.
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Affiliation(s)
- Ann M. Richard
- Center
for Computational Toxicology & Exposure, Office of Research and
Development, U.S. Environmental Protection
Agency, Research Triangle Park, Durham, North Carolina 27711, United States
| | - Ryan Lougee
- Oak
Ridge Affiliated Universities Student Contractor to Center for Computational
Toxicology & Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, North Carolina 27711, United States
| | - Matthew Adams
- Oak
Ridge Affiliated Universities Student Contractor to Center for Computational
Toxicology & Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, North Carolina 27711, United States
| | - Hannah Hidle
- Oak
Ridge Affiliated Universities Student Contractor to Center for Computational
Toxicology & Exposure, Office of Research and Development, U.S. Environmental Protection Agency, Research Triangle Park, Durham, North Carolina 27711, United States
| | - Chihae Yang
- MN-AM,
Molecular Networks GmbH & Altamira LLC, Nuremberg 90411, Germany
| | - James Rathman
- MN-AM,
Molecular Networks GmbH & Altamira LLC, Nuremberg 90411, Germany
| | - Tomasz Magdziarz
- MN-AM,
Molecular Networks GmbH & Altamira LLC, Nuremberg 90411, Germany
| | - Bruno Bienfait
- MN-AM,
Molecular Networks GmbH & Altamira LLC, Nuremberg 90411, Germany
| | - Antony J. Williams
- Center
for Computational Toxicology & Exposure, Office of Research and
Development, U.S. Environmental Protection
Agency, Research Triangle Park, Durham, North Carolina 27711, United States
| | - Grace Patlewicz
- Center
for Computational Toxicology & Exposure, Office of Research and
Development, U.S. Environmental Protection
Agency, Research Triangle Park, Durham, North Carolina 27711, United States
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15
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Smeltz MG, Clifton MS, Henderson WM, McMillan L, Wetmore BA. Targeted Per- and Polyfluoroalkyl substances (PFAS) assessments for high throughput screening: Analytical and testing considerations to inform a PFAS stock quality evaluation framework. Toxicol Appl Pharmacol 2023; 459:116355. [PMID: 36535553 PMCID: PMC10367912 DOI: 10.1016/j.taap.2022.116355] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 11/25/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022]
Abstract
Per- and polyfluoroalkyl substances (PFAS) represent a large chemical class lacking hazard, toxicokinetic, and exposure information. To accelerate PFAS hazard evaluation, new approach methodologies (NAMs) comprised of in vitro high-throughput toxicity screening, toxicokinetic data, and computational modeling are being employed in read across strategies to evaluate the larger PFAS landscape. A critical consideration to ensure robust evaluations is a parallel assessment of the quality of the screening stock solutions, where dimethyl sulfoxide (DMSO) is often the diluent of choice. Challenged by the lack of commercially available reference standards for many of the selected PFAS and reliance on mass spectrometry approaches for such an evaluation, we developed a high-throughput framework to evaluate the quality of screening stocks for 205 PFAS selected for these NAM efforts. Using mass spectrometry coupled with either liquid or gas chromatography, a quality scoring system was developed that incorporated observations during mass spectral examination to provide a simple pass or fail notation. Informational flags were used to further describe findings regarding parent analyte presence through accurate mass identification, evidence of contaminants and/or degradation, or further describe characteristics such as isomer presence. Across the PFAS-DMSO stocks tested, 148 unique PFAS received passing quality scores to allow for further in vitro testing whereas 57 received a failing score primarily due to detection issues or confounding effects of DMSO. Principle component analysis indicated vapor pressure and Henry's Law Constant as top indicators for a failed quality score for those analyzed by gas chromatography. Three PFAS in the hexafluoropropylene oxide family failed due to degradation in DMSO. As the PFAS evaluated spanned over 20 different structural categories, additional commentary describes analytical observations across specific groups related to PFAS stock composition, detection, stability, and methodologic considerations that will be useful for informing future analytical assessment and downstream HTS efforts. The high-throughput stock quality scoring workflow presented holds value as a tool to evaluate chemical presence and quality efficiently and for informing data inclusion in PFAS or other NAM screening efforts.
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Affiliation(s)
- Marci G Smeltz
- Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, NC 27711, United States of America
| | - M Scott Clifton
- Center for Environmental Measurement and Modeling, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, NC 27711, United States of America
| | - W Matthew Henderson
- Center for Environmental Measurement and Modeling, Office of Research and Development, United States Environmental Protection Agency, Athens, GA 23605, United States of America
| | - Larry McMillan
- National Caucus and Center on Black Aged, Inc, Durham, NC, United States of America
| | - Barbara A Wetmore
- Center for Computational Toxicology and Exposure, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, NC 27711, United States of America.
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