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Silva GS, Dutra JDL, da Costa NB, Alves S, Freire RO. Lanthanide Contraction in Lanthanide Organic Frameworks: A Theoretical and Experimental Study. J Phys Chem A 2020; 124:7678-7684. [PMID: 32693596 DOI: 10.1021/acs.jpca.0c05065] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
In this work, the lanthanide (Ln) contraction phenomenon has been analyzed for three-dimensional structures in the solid state. We chose to study an isostructural series of lanthanide organic frameworks (LOFs) of formula [Ln2(C4H4O4)3(H2O)2]n·H2O and 14 crystallographic structures (except promethium complex). The analysis of Ln contraction was made by analyzing the sum of all Ln-O bond lengths and the sum of all O-O distances, for the oxygen atoms of the coordination polyhedra, calculated with different semiempirical quantum mechanical models. The ∑Ln-O and ∑O-O for this LOF can be fit to a second-order polynomial. Based on the crystallographic structures, it is concluded that the phenomenon of Ln contraction is observed. Our results also suggest that the semiempirical Sparkle/PM3 and Sparkle/RM1 models reproduce the Ln contraction phenomenon well, and similar fits were obtained for ∑Ln-O and ∑O-O bond lengths.
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Affiliation(s)
- Gustavo S Silva
- Pople Computational Chemistry Laboratory, Department of Chemistry, Federal University of Sergipe-UFS, 49100-000 São Cristóvão, SE, Brazil
| | - José Diogo L Dutra
- Pople Computational Chemistry Laboratory, Department of Chemistry, Federal University of Sergipe-UFS, 49100-000 São Cristóvão, SE, Brazil
| | - Nivan B da Costa
- Pople Computational Chemistry Laboratory, Department of Chemistry, Federal University of Sergipe-UFS, 49100-000 São Cristóvão, SE, Brazil
| | - Severino Alves
- Department of Elemental Chemistry, Federal University of Pernambuco-UFPE, 50590-470 Recife, PE, Brazil
| | - Ricardo O Freire
- Pople Computational Chemistry Laboratory, Department of Chemistry, Federal University of Sergipe-UFS, 49100-000 São Cristóvão, SE, Brazil
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2
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Bursch M, Hansen A, Grimme S. Fast and Reasonable Geometry Optimization of Lanthanoid Complexes with an Extended Tight Binding Quantum Chemical Method. Inorg Chem 2017; 56:12485-12491. [DOI: 10.1021/acs.inorgchem.7b01950] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Markus Bursch
- Mulliken Center for Theoretical
Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, 53115 Bonn, Beringstraße
4, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical
Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, 53115 Bonn, Beringstraße
4, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical
Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, 53115 Bonn, Beringstraße
4, Germany
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3
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Filho MAM, Dutra JDL, Rocha GB, Simas AM, Freire RO. Parameters for the RM1 Quantum Chemical Calculation of Complexes of the Trications of Thulium, Ytterbium and Lutetium. PLoS One 2016; 11:e0154500. [PMID: 27223475 PMCID: PMC4880313 DOI: 10.1371/journal.pone.0154500] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Accepted: 04/14/2016] [Indexed: 11/19/2022] Open
Abstract
The RM1 quantum chemical model for the calculation of complexes of Tm(III), Yb(III) and Lu(III) is advanced. Subsequently, we tested the models by fully optimizing the geometries of 126 complexes. We then compared the optimized structures with known crystallographic ones from the Cambridge Structural Database. Results indicate that, for thulium complexes, the accuracy in terms of the distances between the lanthanide ion and its directly coordinated atoms is about 2%. Corresponding results for ytterbium and lutetium are both 3%, levels of accuracy useful for the design of lanthanide complexes, targeting their countless applications.
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Affiliation(s)
- Manoel A. M. Filho
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, São Cristóvão, SE, Brazil
| | - José Diogo L. Dutra
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, São Cristóvão, SE, Brazil
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, Recife, PE, Brazil
| | - Gerd B. Rocha
- Departamento de Química, CCEN, Universidade Federal da Paraíba, João Pessoa, PB, Brazil
| | - Alfredo M. Simas
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, Recife, PE, Brazil
- * E-mail: (ROF); (AMS)
| | - Ricardo O. Freire
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, São Cristóvão, SE, Brazil
- * E-mail: (ROF); (AMS)
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4
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Dutra JDL, Filho MAM, Rocha GB, Simas AM, Freire RO. RM1 Semiempirical Quantum Chemistry: Parameters for Trivalent Lanthanum, Cerium and Praseodymium. PLoS One 2015; 10:e0124372. [PMID: 26132289 PMCID: PMC4489505 DOI: 10.1371/journal.pone.0124372] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2014] [Accepted: 02/27/2015] [Indexed: 11/19/2022] Open
Abstract
The RM1 model for the lanthanides is parameterized for complexes of the trications of lanthanum, cerium, and praseodymium. The semiempirical quantum chemical model core stands for the [Xe]4fn electronic configuration, with n =0,1,2 for La(III), Ce(III), and Pr(III), respectively. In addition, the valence shell is described by three electrons in a set of 5d, 6s, and 6p orbitals. Results indicate that the present model is more accurate than the previous sparkle models, although these are still very good methods provided the ligands only possess oxygen or nitrogen atoms directly coordinated to the lanthanide ion. For all other different types of coordination, the present RM1 model for the lanthanides is much superior and must definitely be used. Overall, the accuracy of the model is of the order of 0.07Å for La(III) and Pr(III), and 0.08Å for Ce(III) for lanthanide-ligand atom distances which lie mostly around the 2.3Å to 2.6Å interval, implying an error around 3% only.
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Affiliation(s)
- José Diogo L. Dutra
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100–000, São Cristóvão, SE, Brazil
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50740–540, Recife, PE, Brazil
| | - Manoel A. M. Filho
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100–000, São Cristóvão, SE, Brazil
| | - Gerd B. Rocha
- Departamento de Química, CCEN, Universidade Federal da Paraíba, 58.059–970, João Pessoa, PB, Brazil
| | - Alfredo M. Simas
- Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50740–540, Recife, PE, Brazil
| | - Ricardo O. Freire
- Pople Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100–000, São Cristóvão, SE, Brazil
- * E-mail:
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5
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Akimov AV, Prezhdo OV. Large-Scale Computations in Chemistry: A Bird’s Eye View of a Vibrant Field. Chem Rev 2015; 115:5797-890. [DOI: 10.1021/cr500524c] [Citation(s) in RCA: 159] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Alexey V. Akimov
- Department
of Chemistry, University of South California, Los Angeles, California 90089, United States
| | - Oleg V. Prezhdo
- Department
of Chemistry, University of South California, Los Angeles, California 90089, United States
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Filho MAM, Dutra JDL, Cavalcanti HLB, Rocha GB, Simas AM, Freire RO. RM1 Model for the Prediction of Geometries of Complexes of the Trications of Eu, Gd, and Tb. J Chem Theory Comput 2014; 10:3031-7. [DOI: 10.1021/ct400909w] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Manoel A. M. Filho
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
| | - José Diogo L. Dutra
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
| | - Higo L. B. Cavalcanti
- Departamento
de Química, CCEN, Universidade Federal da Paraíba, 58.059-970 João Pessoa, PB, Brazil
| | - Gerd B. Rocha
- Departamento
de Química, CCEN, Universidade Federal da Paraíba, 58.059-970 João Pessoa, PB, Brazil
| | - Alfredo M. Simas
- Departamento
de Química Fundamental, Universidade Federal de Pernambuco, 50.740-540 Recife, PE, Brazil
| | - Ricardo O. Freire
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
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Dutra JDL, Filho MAM, Rocha GB, Freire RO, Simas AM, Stewart JJP. Sparkle/PM7 Lanthanide Parameters for the Modeling of Complexes and Materials. J Chem Theory Comput 2013; 9:3333-3341. [PMID: 24163641 DOI: 10.1021/ct301012h] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
The recently published Parametric Method number 7, PM7, is the first semiempirical method to be successfully tested by modeling crystal structures and heats of formation of solids. PM7 is thus also capable of producing results of useful accuracy for materials science, and constitutes a great improvement over its predecessor, PM6. In this article, we present Sparkle Model parameters to be used with PM7 that allow the prediction of geometries of metal complexes and materials which contain lanthanide trications. Accordingly, we considered the geometries of 224 high-quality crystallographic structures of complexes for the parameterization set and 395 more for the validation of the parameterization for the whole lanthanide series, from La(III) to Lu(III). The average unsigned error for Sparkle/PM7 for the distances between the metal ion and its coordinating atoms is 0.063Å for all lanthanides, ranging from a minimum of 0.052Å for Tb(III) to 0.088Å for Ce(III), comparable to the equivalent errors in the distances predicted by PM7 for other metals. These distance deviations follow a gamma distribution within a 95% level of confidence, signifying that they appear to be random around a mean, confirming that Sparkle/PM7 is a well-tempered method. We conclude by carrying out a Sparkle/PM7 full geometry optimization of two spatial groups of the same thulium-containing metal organic framework, with unit cells accommodating 376 atoms, of which 16 are Tm(III) cations; the optimized geometries were in good agreement with the crystallographic ones. These results emphasize the capability of the use of the Sparkle Model for the prediction of geometries of compounds containing lanthanide trications within the PM7 semiempirical model, as well as the usefulness of such semiempirical calculations for materials modeling. Sparkle/PM7 is available in the software package MOPAC2012, at no cost for academics and can be obtained from http://openmopac.net.
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Affiliation(s)
- José Diogo L Dutra
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000 - São Cristóvão, SE, Brazil
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de Oliveira CAF, Silva FFD, Malvestiti I, Malta VRDS, Dutra JDL, da Costa NB, Freire RO, Alves S. Synthesis, characterization, luminescent properties and theoretical study of two new coordination polymers containing lanthanide [Ce(III) or Yb(III)] and succinate ions. J Mol Struct 2013. [DOI: 10.1016/j.molstruc.2013.03.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Filho MAM, Dutra JDL, Rocha GB, Freire RO, Simas AM. Sparkle/RM1 parameters for the semiempirical quantum chemical calculation of lanthanide complexes. RSC Adv 2013. [DOI: 10.1039/c3ra41406j] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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10
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Divya V, Freire RO, Reddy MLP. Tuning of the excitation wavelength from UV to visible region in Eu3+-β-diketonate complexes: Comparison of theoretical and experimental photophysical properties. Dalton Trans 2011; 40:3257-68. [DOI: 10.1039/c0dt01652g] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Rodrigues DA, da Costa NB, Freire RO. Would the Pseudocoordination Centre Method Be Appropriate To Describe the Geometries of Lanthanide Complexes? J Chem Inf Model 2010; 51:45-51. [DOI: 10.1021/ci100205c] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Danilo A. Rodrigues
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000, São Cristóvão, SE, Brazil
| | - Nivan B. da Costa
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000, São Cristóvão, SE, Brazil
| | - Ricardo O. Freire
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000, São Cristóvão, SE, Brazil
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Freire RO, Simas AM. Sparkle/PM6 Parameters for all Lanthanide Trications from La(III) to Lu(III). J Chem Theory Comput 2010; 6:2019-23. [PMID: 26615930 DOI: 10.1021/ct100192c] [Citation(s) in RCA: 79] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ricardo O. Freire
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000, São Cristóvão, SE, Brazil and Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50.740-540, Recife, PE, Brazil
| | - Alfredo M. Simas
- Departamento de Química, Universidade Federal de Sergipe, 49.100-000, São Cristóvão, SE, Brazil and Departamento de Química Fundamental, Universidade Federal de Pernambuco, 50.740-540, Recife, PE, Brazil
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Paolucci G, Bortoluzzi M, Napoli M, Longo P, Bertolasi V. The role of the ionic radius in the ethylene polymerization catalyzed by new group 3 and lanthanide scorpionate complexes. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.molcata.2009.10.021] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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