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Koch D, Pavanello M, Shao X, Ihara M, Ayers PW, Matta CF, Jenkins S, Manzhos S. The Analysis of Electron Densities: From Basics to Emergent Applications. Chem Rev 2024; 124:12661-12737. [PMID: 39545704 DOI: 10.1021/acs.chemrev.4c00297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
Abstract
The electron density determines all properties of a system of nuclei and electrons. It is both computable and observable. Its topology allows gaining insight into the mechanisms of bonding and other phenomena in a way that is complementary to and beyond that available from the molecular orbital picture and the formal oxidation state (FOS) formalism. The ability to derive mechanistic insight from electron density is also important with methods where orbitals are not available, such as orbital-free density functional theory (OF-DFT). While density topology-based analyses such as QTAIM (quantum theory of atoms-in-molecules) have been widely used, novel, vector-based techniques recently emerged such as next-generation (NG) QTAIM. Density-dependent quantities are also actively used in machine learning (ML)-based methods, in particular, for ML DFT functional development, including machine-learnt kinetic energy functionals. We review QTAIM and its recent extensions such as NG-QTAIM and localization-delocalization matrices (LDM) and their uses in the analysis of bonding, conformations, mechanisms of redox reactions excitations, as well as ultrafast phenomena. We review recent research showing that direct density analysis can circumvent certain pitfalls of the FOS formalism, in particular in the description of anionic redox, and of the widely used (spherically) projected density of states analysis. We discuss uses of density-based quantities for the construction of DFT functionals and prospects of applications of analyses of density topology to get mechanistic insight with OF-DFT and recently developed time-dependent OF-DFT.
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Affiliation(s)
- Daniel Koch
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Quebec J3X 1S2, Canada
| | - Michele Pavanello
- Department of Physics, Rutgers University, 101 Warren Street, Newark, New Jersey 07102, United States
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Xuecheng Shao
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Manabu Ihara
- School of Materials and Chemical Technology, Institute of Science Tokyo, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Paul W Ayers
- Department of Chemistry and Chemical Biology, McMaster University, 25-1280 Main Street West, Hamilton, Ontario L8S 4M1, Canada
| | - Chérif F Matta
- Department of Chemistry and Physics, Mount Saint Vincent University, 166 Bedford Highway, Halifax, Nova Scotia B3M 2J6, Canada
| | - Samantha Jenkins
- College of Chemistry and Chemical Engineering, Hunan Normal University, 36 Lushan Road, Changsha, Hunan 410081, People's Republic of China
| | - Sergei Manzhos
- School of Materials and Chemical Technology, Institute of Science Tokyo, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
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Guerra C, Ayarde‐Henríquez L, Chamorro E, Ensuncho A. Uncovering Triradicaloid Structures in S
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Benzene Photochemistry**. CHEMPHOTOCHEM 2023. [DOI: 10.1002/cptc.202200263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Cristian Guerra
- Universidad Andrés Bello Facultad de Ciencias Exactas Centro de Química Teórica & Computacional (CQT&C) and Departamento de Ciencias Químicas Avenida República 275 8370146 Santiago de Chile Chile
- Universidad de Córdoba Facultad de Ciencias Básicas Grupo de Química Computacional Carrera 6 No. 77–305 Montería Córdoba Colombia
| | - Leandro Ayarde‐Henríquez
- Universidad Andrés Bello Facultad de Ciencias Exactas Centro de Química Teórica & Computacional (CQT&C) and Departamento de Ciencias Químicas Avenida República 275 8370146 Santiago de Chile Chile
| | - Eduardo Chamorro
- Universidad Andrés Bello Facultad de Ciencias Exactas Centro de Química Teórica & Computacional (CQT&C) and Departamento de Ciencias Químicas Avenida República 275 8370146 Santiago de Chile Chile
| | - Adolfo Ensuncho
- Universidad de Córdoba Facultad de Ciencias Básicas Grupo de Química Computacional Carrera 6 No. 77–305 Montería Córdoba Colombia
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Li Z, Yang Y, Xu T, Früchtl H, van Mourik T, Paterson MJ, Shigeta Y, Kirk SR, Jenkins S. Next generation quantum theory of atoms in molecules for the design of emitters exhibiting thermally activated delayed fluorescence with laser irradiation. J Comput Chem 2022; 43:206-214. [PMID: 34787324 DOI: 10.1002/jcc.26783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/01/2021] [Accepted: 10/25/2021] [Indexed: 11/05/2022]
Abstract
The effect of a static electric (E)-field and an unchirped and chirped laser pulse field on the cycl[3.3.3]azine molecule was investigated using next-generation quantum theory of atoms in molecules (NG-QTAIM). Despite the magnitude of the E-field of the laser pulses being an order of magnitude lower than for the static E-field, the variation of the energy gap between the lowest lying singlet (S1 ) and triplet (T1 ) excited states was orders of magnitude greater for the laser pulse than for the static E-field. Insights into the response of the electronic structure were captured by NG-QTAIM, where differences in the inverted singlet-triplet gap due to the laser pulses were significant larger compared to those induced by the static E-field. The response of the S1 and T1 excited states, as determined by NG-QTAIM, switched discontinuously between weak and strong chemical character for the static E-field. In contrast, the response to the laser pulses, determined by NG-QTAIM, is to induce a continuous range of chemical character, indicating the unique ability of the laser pulses to induce polarization effects in the form of "mixed" bond types. Our analysis demonstrates that NG-QTAIM is a useful tool for understanding the response to laser irradiation of the lowest-lying singlet S1 and triplet T1 excited states of emitters exhibiting thermally activated delayed fluorescence. The chirped laser pulse led to more frequent instances of the desired outcome of an inverted singlet-triplet gap than the unchirped pulse, indicating its usefulness as a tool to design more efficient organic light-emitting diode devices.
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Affiliation(s)
- Zi Li
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Yong Yang
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Herbert Früchtl
- EaStCHEM School of Chemistry, University of Saint Andrews, St Andrews, Scotland, UK
| | - Tanja van Mourik
- EaStCHEM School of Chemistry, University of Saint Andrews, St Andrews, Scotland, UK
| | - Martin J Paterson
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, UK
| | - Yasuteru Shigeta
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Steven R Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
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Nie X, Filatov M, Kirk SR, Jenkins S. Photochemical ring-opening reactions of oxirane with the Ehrenfest force topology. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Non-covalent interactions abetted supramolecular arrangements of N-Substituted benzylidene acetohydrazide to direct its solid-state network. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129827] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Ha JK, Kim K, Min SK. Machine Learning-Assisted Excited State Molecular Dynamics with the State-Interaction State-Averaged Spin-Restricted Ensemble-Referenced Kohn-Sham Approach. J Chem Theory Comput 2021; 17:694-702. [PMID: 33470100 DOI: 10.1021/acs.jctc.0c01261] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We present a machine learning-assisted excited state molecular dynamics (ML-ESMD) based on the ensemble density functional theory framework. Since we represent a diabatic Hamiltonian in terms of generalized valence bond ansatz within the state-interaction state-averaged spin-restricted ensemble-referenced Kohn-Sham (SI-SA-REKS) method, we can avoid singularities near conical intersections, which are crucial in excited state molecular dynamics simulations. We train the diabatic Hamiltonian elements and their analytical gradients with the SchNet architecture to construct machine learning models, while the phase freedom of off-diagonal elements of the Hamiltonian is cured by introducing the phase-less loss function. Our machine learning models show reasonable accuracy with mean absolute errors of ∼0.1 kcal/mol and ∼0.5 kcal/mol/Å for the diabatic Hamiltonian elements and their gradients, respectively, for penta-2,4-dieniminium cation. Moreover, by exploiting the diabatic representation, our models can predict correct conical intersection structures and their topologies. In addition, our ML-ESMD simulations give almost identical result with a direct dynamics at the same level of theory.
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Affiliation(s)
- Jong-Kwon Ha
- Department of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), 50 UNIST-gil, Ulju-gun, Ulsan 44919, South Korea
| | - Kicheol Kim
- Department of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), 50 UNIST-gil, Ulju-gun, Ulsan 44919, South Korea
| | - Seung Kyu Min
- Department of Chemistry, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), 50 UNIST-gil, Ulju-gun, Ulsan 44919, South Korea
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Tian T, Xu T, Kirk SR, Rongde IT, Tan YB, Manzhos S, Shigeta Y, Jenkins S. Intramolecular mode coupling of the isotopomers of water: a non-scalar charge density-derived perspective. Phys Chem Chem Phys 2020; 22:2509-2520. [DOI: 10.1039/c9cp05879f] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Left: The BCP trajectories T(s) for H2O for the bending (Q1) mode, the axes labels of the trajectory T(s). The green spheres correspond to the bond critical point (BCPs). Right: The corresponding T(s) for H2O for the symmetric-stretch (Q2) mode.
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Affiliation(s)
- Tian Tian
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Steven R. Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
| | - Ian Tay Rongde
- Department of Mechanical Engineering
- National University of Singapore
- Singapore
| | - Yong Boon Tan
- Department of Mechanical Engineering
- National University of Singapore
- Singapore
| | - Sergei Manzhos
- Centre Énergie Matériaux Télécommunications
- Institut National de la Recherche Scientifique
- 1650 boulevard Lionel-Boulet
- Varennes QC J3X1S2
- Canada
| | - Yasuteru Shigeta
- Center for Computational Sciences
- University of Tsukuba
- Tsukuba 305-8577
- Japan
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research and Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources
- College of Chemistry and Chemical Engineering
- Hunan Normal University
- Changsha
- China
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Bin X, Xu T, Kirk SR, Jenkins S. The directional bonding of [1.1.1]propellane with next generation QTAIM. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.06.054] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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