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Koch D, Pavanello M, Shao X, Ihara M, Ayers PW, Matta CF, Jenkins S, Manzhos S. The Analysis of Electron Densities: From Basics to Emergent Applications. Chem Rev 2024; 124:12661-12737. [PMID: 39545704 DOI: 10.1021/acs.chemrev.4c00297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2024]
Abstract
The electron density determines all properties of a system of nuclei and electrons. It is both computable and observable. Its topology allows gaining insight into the mechanisms of bonding and other phenomena in a way that is complementary to and beyond that available from the molecular orbital picture and the formal oxidation state (FOS) formalism. The ability to derive mechanistic insight from electron density is also important with methods where orbitals are not available, such as orbital-free density functional theory (OF-DFT). While density topology-based analyses such as QTAIM (quantum theory of atoms-in-molecules) have been widely used, novel, vector-based techniques recently emerged such as next-generation (NG) QTAIM. Density-dependent quantities are also actively used in machine learning (ML)-based methods, in particular, for ML DFT functional development, including machine-learnt kinetic energy functionals. We review QTAIM and its recent extensions such as NG-QTAIM and localization-delocalization matrices (LDM) and their uses in the analysis of bonding, conformations, mechanisms of redox reactions excitations, as well as ultrafast phenomena. We review recent research showing that direct density analysis can circumvent certain pitfalls of the FOS formalism, in particular in the description of anionic redox, and of the widely used (spherically) projected density of states analysis. We discuss uses of density-based quantities for the construction of DFT functionals and prospects of applications of analyses of density topology to get mechanistic insight with OF-DFT and recently developed time-dependent OF-DFT.
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Affiliation(s)
- Daniel Koch
- Centre Énergie Matériaux Télécommunications, Institut National de la Recherche Scientifique, 1650 boulevard Lionel-Boulet, Varennes, Quebec J3X 1S2, Canada
| | - Michele Pavanello
- Department of Physics, Rutgers University, 101 Warren Street, Newark, New Jersey 07102, United States
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Xuecheng Shao
- Department of Chemistry, Rutgers University, 73 Warren Street, Newark, New Jersey 07102, United States
| | - Manabu Ihara
- School of Materials and Chemical Technology, Institute of Science Tokyo, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
| | - Paul W Ayers
- Department of Chemistry and Chemical Biology, McMaster University, 25-1280 Main Street West, Hamilton, Ontario L8S 4M1, Canada
| | - Chérif F Matta
- Department of Chemistry and Physics, Mount Saint Vincent University, 166 Bedford Highway, Halifax, Nova Scotia B3M 2J6, Canada
| | - Samantha Jenkins
- College of Chemistry and Chemical Engineering, Hunan Normal University, 36 Lushan Road, Changsha, Hunan 410081, People's Republic of China
| | - Sergei Manzhos
- School of Materials and Chemical Technology, Institute of Science Tokyo, Ookayama 2-12-1, Meguro-ku, Tokyo 152-8552, Japan
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Kozuch S. When, Where and Why Boron Prefers Boron to Nitrogen. Chemphyschem 2024; 25:e202300875. [PMID: 38146920 DOI: 10.1002/cphc.202300875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/20/2023] [Accepted: 12/26/2023] [Indexed: 12/27/2023]
Abstract
Boron is the archetypal Lewis acid, and therefore it is only natural that it prefers to bind nitrogen, its usual Lewis base counterpart. To challenge this assumption, we present a computationally designed bicyclopentane molecule akin to [1.1.1]propellane, but with pyramidal B and N inner atoms bonded by an "inverted" dative bond. Unexpectedly, the dimer of this system prefers to interact via an atypical boron-boron bond over the supposedly obvious boron-nitrogen bond. A molecular orbital analysis shows that the boron in this peculiar entity acts both as an electron donor and an electron acceptor, making the dimerization an amphoteric-amphoteric interaction process.
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Affiliation(s)
- Sebastian Kozuch
- Department of Chemistry, Ben-Gurion University of the Negev, Beer-Sheva, Israel, 84105
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3
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Shaik S, Danovich D, Hiberty PC. On The Nature of the Chemical Bond in Valence Bond Theory. J Chem Phys 2022; 157:090901. [DOI: 10.1063/5.0095953] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
This perspective outlines a panoramic description of the nature of the chemical bond according to valence bond theory. It describes single bonds, and charge-shift bonds (CSBs) in which the entire/most of the bond energy arises from the resonance between the covalent and ionic structures of the bond. Many CSBs are homonuclear bonds. Hypervalent molecules are CSBs. Then we describe multiply bonded molecules with emphasis on C2 and 3O2. The perspective outlines an effective methodology of peeling the electronic structure to the necessary minimum: a structure with a quadruple bond, and two minor structures with double bonds, which stabilize the quadruple bond by resonance. 3O2 is chosen because it is a persistent diradical. The persistence of 3O2 is due to the large CSB resonance interaction of the π-3-electron bonds. Subsequently, we describe the roles of π vs. σ in the geometric preferences in unsaturated molecules, and their Si-based analogs. Then, the perspective discusses bonding in clusters of univalent metal-atoms, which possess only parallel spins, and are nevertheless bonded due to multiple resonance interactions. The bond energy reaches ~40 kcal/mol for a pair of atoms (in n+1Cun; n~10-12). The final subsection discusses singlet excited states in ethene, ozone and SO2. It demonstrates the capability of the breathing-orbital VB method to yield an accurate description of a variety of excited states using 10 or less VB structures. Furthermore, the method underscores covalent structures which play a key role in the correct description and bonding of these excited states.
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Affiliation(s)
- Sason Shaik
- Hebrew University of Jerusalem Institute of Chemistry, Israel
| | - David Danovich
- Hebrew University of Jerusalem Institute of Chemistry, Israel
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Li Z, Yang Y, Xu T, Früchtl H, van Mourik T, Paterson MJ, Shigeta Y, Kirk SR, Jenkins S. Next generation quantum theory of atoms in molecules for the design of emitters exhibiting thermally activated delayed fluorescence with laser irradiation. J Comput Chem 2022; 43:206-214. [PMID: 34787324 DOI: 10.1002/jcc.26783] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Revised: 10/01/2021] [Accepted: 10/25/2021] [Indexed: 11/05/2022]
Abstract
The effect of a static electric (E)-field and an unchirped and chirped laser pulse field on the cycl[3.3.3]azine molecule was investigated using next-generation quantum theory of atoms in molecules (NG-QTAIM). Despite the magnitude of the E-field of the laser pulses being an order of magnitude lower than for the static E-field, the variation of the energy gap between the lowest lying singlet (S1 ) and triplet (T1 ) excited states was orders of magnitude greater for the laser pulse than for the static E-field. Insights into the response of the electronic structure were captured by NG-QTAIM, where differences in the inverted singlet-triplet gap due to the laser pulses were significant larger compared to those induced by the static E-field. The response of the S1 and T1 excited states, as determined by NG-QTAIM, switched discontinuously between weak and strong chemical character for the static E-field. In contrast, the response to the laser pulses, determined by NG-QTAIM, is to induce a continuous range of chemical character, indicating the unique ability of the laser pulses to induce polarization effects in the form of "mixed" bond types. Our analysis demonstrates that NG-QTAIM is a useful tool for understanding the response to laser irradiation of the lowest-lying singlet S1 and triplet T1 excited states of emitters exhibiting thermally activated delayed fluorescence. The chirped laser pulse led to more frequent instances of the desired outcome of an inverted singlet-triplet gap than the unchirped pulse, indicating its usefulness as a tool to design more efficient organic light-emitting diode devices.
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Affiliation(s)
- Zi Li
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Yong Yang
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Tianlv Xu
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Herbert Früchtl
- EaStCHEM School of Chemistry, University of Saint Andrews, St Andrews, Scotland, UK
| | - Tanja van Mourik
- EaStCHEM School of Chemistry, University of Saint Andrews, St Andrews, Scotland, UK
| | - Martin J Paterson
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh, UK
| | - Yasuteru Shigeta
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Japan
| | - Steven R Kirk
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
| | - Samantha Jenkins
- Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research, Key Laboratory of Resource National and Local Joint Engineering Laboratory for New Petro-chemical Materials and Fine Utilization of Resources, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, China
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Li J, Goffitzer DJ, Xiang M, Chen Y, Jiang W, Diefenbach M, Zhu H, Holthausen MC, Roesky HW. 1-Aza-2,4-disilabicyclo[1.1.0]butanes with Superelongated C-N σ-Bonds. J Am Chem Soc 2021; 143:8244-8248. [PMID: 34037391 DOI: 10.1021/jacs.1c03149] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Two silylene molecules oxidatively react under formal [1 + 2 + 1]-cycloaddition to the C≡N bond of nitriles to yield 1-aza-2,4-disilabicyclo[1.1.0]butanes (L)(Cl)Si[μ-η1,2-NC(p-RC6H4)]Si(Cl)(L) (L = PhC(NtBu)2, R = CF3 (2), F (3), Cl (4), Br (5)). The strongly folded bicyclic SiCNSi cores in 2-5 feature inverted bridgehead carbon atoms and superelongated C-N bonds [1.745(12) to 1.801(2) Å], exceeding the lengths of C-N single bonds in known silaaziridines by up to 23%. Detailed bonding analysis discloses C-N bonding interactions, sharing far-reaching similarities with the central C-C bond in [1.1.1]propellane.
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Affiliation(s)
- Jiancheng Li
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Daniel J Goffitzer
- Institut für Anorganische und Analytische Chemie, Goethe-Universität Frankfurt, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Meiyu Xiang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Yilin Chen
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Wenjun Jiang
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Martin Diefenbach
- Institut für Anorganische und Analytische Chemie, Goethe-Universität Frankfurt, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Hongping Zhu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Max C Holthausen
- Institut für Anorganische und Analytische Chemie, Goethe-Universität Frankfurt, Max-von-Laue-Straße 7, 60438 Frankfurt am Main, Germany
| | - Herbert W Roesky
- Institut für Anorganische Chemie, Georg-August-Universität, 37077 Göttingen, Germany
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Braïda B, Shaik S, Wu W, Hiberty PC. Comment on "The 'Inverted Bonds' Revisited. Analysis of 'in Silico' Models and of [1.1.1]Propellane Using Orbital Forces". Chemistry 2020; 26:6935-6939. [PMID: 32390149 DOI: 10.1002/chem.201905666] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 02/05/2020] [Indexed: 11/11/2022]
Abstract
Inverted bonds: In this Correspondence, the authors comment on the recent paper on inverted bonds in [1.1.1]propellane by Chaquin et al.
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Affiliation(s)
- Benoît Braïda
- Laboratoire de Chimie Théorique, Sorbonne Université, 75005, Paris, France
| | - Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - Wei Wu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical, and Computational Chemistry, Department of Chemistry, Xiamen University, Xiamen, Fujian, 361005, P. R. China
| | - Philippe C Hiberty
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405, Orsay, France
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Shaik S, Danovich D, Galbraith JM, Braïda B, Wu W, Hiberty PC. Charge‐Shift Bonding: A New and Unique Form of Bonding. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201910085] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Sason Shaik
- Institute of Chemistry The Hebrew University of Jerusalem 9190401 Jerusalem Israel
| | - David Danovich
- Institute of Chemistry The Hebrew University of Jerusalem 9190401 Jerusalem Israel
| | - John Morrison Galbraith
- Department of Chemistry Biochemistry and Physics, Marist College 3399 North Road Poughkeepsie NY 12601 USA
| | - Benoît Braïda
- Laboratoire de Chimie Theorique Sorbonne Universite, UMR7616 CNRS Paris 75252 France
| | - Wei Wu
- State Key Laboratory of Physical Chemistry of Solid Surfaces Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, and Department of Chemistry Xiamen University Xiamen Fujian 361005 China
| | - Philippe C. Hiberty
- Laboratoire de Chimie Physique, CNRS UMR8000, Bat. 349 Université de Paris-Sud 91405 Orsay Cédex France
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Shaik S, Danovich D, Galbraith JM, Braïda B, Wu W, Hiberty PC. Charge-Shift Bonding: A New and Unique Form of Bonding. Angew Chem Int Ed Engl 2019; 59:984-1001. [PMID: 31476104 DOI: 10.1002/anie.201910085] [Citation(s) in RCA: 78] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Indexed: 12/14/2022]
Abstract
Charge-shift bonds (CSBs) constitute a new class of bonds different than covalent/polar-covalent and ionic bonds. Bonding in CSBs does not arise from either the covalent or the ionic structures of the bond, but rather from the resonance interaction between the structures. This Essay describes the reasons why the CSB family was overlooked by valence-bond pioneers and then demonstrates that the unique status of CSBs is not theory-dependent. Thus, valence bond (VB), molecular orbital (MO), and energy decomposition analysis (EDA), as well as a variety of electron density theories all show the distinction of CSBs vis-à-vis covalent and ionic bonds. Furthermore, the covalent-ionic resonance energy can be quantified from experiment, and hence has the same essential status as resonance energies of organic molecules, e.g., benzene. The Essay ends by arguing that CSBs are a distinct family of bonding, with a potential to bring about a Renaissance in the mental map of the chemical bond, and to contribute to productive chemical diversity.
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Affiliation(s)
- Sason Shaik
- Institute of Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - David Danovich
- Institute of Chemistry, The Hebrew University of Jerusalem, 9190401, Jerusalem, Israel
| | - John Morrison Galbraith
- Department of Chemistry, Biochemistry and Physics, Marist College, 3399 North Road, Poughkeepsie, NY, 12601, USA
| | - Benoît Braïda
- Laboratoire de Chimie Theorique, Sorbonne Universite, UMR7616 CNRS, Paris, 75252, France
| | - Wei Wu
- State Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, and Department of Chemistry, Xiamen University, Xiamen, Fujian, 361005, China
| | - Philippe C Hiberty
- Laboratoire de Chimie Physique, CNRS UMR8000, Bat. 349, Université de Paris-Sud, 91405, Orsay Cédex, France
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