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Tamer Ö, Şimşek M, Avcı D, Atalay Y. Static/dynamic first and second order hyperpolarizabilities, optimized structures, IR, UV-Vis, 1H and 13C NMR spectra for effective charge transfer compounds: A DFT study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2023; 286:122005. [PMID: 36302281 DOI: 10.1016/j.saa.2022.122005] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Revised: 10/13/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
The effective charge transfer compounds, 4-N,N-dimethylamino-4'-N'-methyl-stilbazolium m-trifluoromethylbenzene-sulfonate (DSMFS) and 4-N,N-dimethylamino-4'-N'-methyl-stilbazolium p-trifluoromethylbenzene-sulfonate (DSPFS), were simulated in terms of geometric structure, IR, UV-Vis, 1H NMR and 13C NMR spectra. UV-vis spectra for both molecules give two peaks at 290 and 436 nm assigned as n-π* and π-π* transitions. The HOMO-LUMO energy gap for DSMFS (2.8174 eV) was calculated as lower than that of DSPFS (4.6649 eV). The detailed frontier molecular orbital analysis also indicated that the intra- and inter-molecular charge transfers occur in DSMFS and DSPFS. The static and dynamic (ω = 532 and 1064 nm) nonlinear optical properties were also investigated by using B3LYP/6-311++G(d,p) level. Static first and second order hyperpolarizabilities (β and γ) of DSMFS were obtained 1.5726 × 10-28 esu and 271.63 × 10-36 esu, and those for DSPFS were obtained as 1.5528 × 10-28 esu and 303.31 × 10-36 esu. The dynamic β and γ were obtained as higher than the static corresponding parameters. However, the increasing wavelength in dynamic NLO calculations led to a decrease in β and γ parameters.
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Affiliation(s)
- Ömer Tamer
- Sakarya University, Faculty of Science, Department of Physics, Sakarya 54050, Turkey.
| | - Merve Şimşek
- Sakarya University, Faculty of Science, Department of Physics, Sakarya 54050, Turkey
| | - Davut Avcı
- Sakarya University, Faculty of Science, Department of Physics, Sakarya 54050, Turkey
| | - Yusuf Atalay
- Sakarya University, Faculty of Science, Department of Physics, Sakarya 54050, Turkey
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Tamer Ö, Şimşek M, Avcı D, Atalay Y. First and second order hyperpolarizabilities of flavonol derivatives: A density functional theory study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 283:121728. [PMID: 35964350 DOI: 10.1016/j.saa.2022.121728] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 08/03/2022] [Accepted: 08/05/2022] [Indexed: 06/15/2023]
Abstract
In this study, seventeen flavonol derivatives (1-17) were evaluated with regard to their first- and second-order hyperpolarizability parameters. For this purpose, the molecular geometries of 1-17 were optimized by using B3LYP/6-311++G(d,p) level. Spectroscopic characterizations for 1-17 were executed through the calculations of IR, UV-vis, 1H NMR and 13C NMR spectra. The quantum chemical parameters such as electronegativity, chemical hardness, chemical potential and electrophilicity indexes were obtained by using the frontier molecular orbital (FMO) energies. The potential energy distribution (PED) analysis was used to provide a detailed assignment of vibrational bands. Important contributions to electronic absorption bands from FMOs were also evaluated. The distribution of FMOs to the whole molecule was investigated to determine the nature of electronic charge transfers in 1-17. The static and dynamic first- and second-order hyperpolarizability parameters for 1-17 were calculated by using B3LYP/6-311++G(d,p) level. The static β and γ were calculated at the ranges of 9.8279-0.0303 × 10-29 esu and 80.200-268.40 × 10-36 esu. The dynamic β and γ (ω = 532 nm) were also obtained in the field of 1.0440-71.786 × 10-29 esu and 306.20-3607.00 × 10-36 esu. This wide range of β and γ values indicate that flavonol derivatives with rational substitution may be promising candidates for first- and second-order NLO applications.
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Affiliation(s)
- Ömer Tamer
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey.
| | - Merve Şimşek
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Davut Avcı
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Yusuf Atalay
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
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Mahmoudi G, Sahli S, Tamer Ö, Berrin Çınar E, Böhme U, Dege N, Nasr CB, Kaabi K. Investigation on crystal structure, spectral FT-IR analysis, DFT and molecular docking studies of a novel complex with the N′-(pyridin-2-ylmethylene)nicotinohydrazide. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Sharma S, Utreja D. Synthesis and antiviral activity of diverse heterocyclic scaffolds. Chem Biol Drug Des 2022; 100:870-920. [PMID: 34551197 DOI: 10.1111/cbdd.13953] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 09/07/2021] [Accepted: 09/11/2021] [Indexed: 01/25/2023]
Abstract
Heterocyclic moieties form a major part of organic chemistry as they are widely distributed in nature and have wide scale practical applications ranging from extensive clinical use to diverse fields such as medicine, agriculture, photochemistry, biocidal formulations, and polymer science. By virtue of their therapeutic properties, they could be employed in combating many infectious diseases. Among the common infectious diseases, viral infections are of great public health importance worldwide. Thus, there is an urgent need for the discovery and development of antiviral drugs and clinical methods to prevent various viral infections so as to increase the life expectancy. This review presents the comprehensive overview of the synthesis and antiviral activity of different heterocyclic compounds 2015 onwards, which aids in present knowledge and helps the researchers and other stakeholders to explore their field.
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Affiliation(s)
- Shivali Sharma
- Department of Chemistry, College of Basic Sciences and Humanities, Punjab Agricultural University, Ludhiana, India
| | - Divya Utreja
- Department of Chemistry, College of Basic Sciences and Humanities, Punjab Agricultural University, Ludhiana, India
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Toy M, Vural H, Şenöz H. Synthesis, Spectroscopic (FT-IR, 1H NMR, and UV-Vis) and Nonlinear Optical Properties of a Novel 3-(p-Cyanophenyl)-5-( o, m, p-Iodophenyl)-1-Phenylformazan: Experimental and DFT Studies. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2133903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Mehmet Toy
- Department of Science Education, Amasya University, Amasya, Turkey
| | - Hatice Vural
- Department of Electrical and Electronics Engineering, Amasya University, Amasya, Turkey
| | - Hülya Şenöz
- Department of Chemistry, Hacettepe University, Ankara, Turkey
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Karrouchi K, Fettach S, Tamer Ö, Avcı D, Başoğlu A, Atalay Y, Radi S, Ghabbour HA, Mabkhot YN, Faouzi MEA, Ansar M. Experimental and Computational Interaction Studies of (E)-N’-Benzylidene-5-Methyl-1H-Pyrazole-3-Carbohydrazide with α-Glucosidase and α-Amylase Enzymes: A Detailed Structural, Spectroscopic, and Biophysical Study. Polycycl Aromat Compd 2022. [DOI: 10.1080/10406638.2022.2036774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Khalid Karrouchi
- Laboratory of Analytical Chemistry and Bromatology, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Morocco
| | - Saad Fettach
- Laboratory of Pharmacology and Toxicology, Biopharmaceutical and Toxicological Analysis Research Team, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Morocco
| | - Ömer Tamer
- Faculty of Arts and Sciences, Department of Physics, Sakarya University, Sakarya, Turkey
| | - Davut Avcı
- Faculty of Arts and Sciences, Department of Physics, Sakarya University, Sakarya, Turkey
| | - Adil Başoğlu
- Faculty of Arts and Sciences, Department of Physics, Sakarya University, Sakarya, Turkey
| | - Yusuf Atalay
- Faculty of Arts and Sciences, Department of Physics, Sakarya University, Sakarya, Turkey
| | - Smaail Radi
- Laboratoire de Chimie Appliquée et Environnement (LCAE), Faculté Des Sciences, Université Mohamed I, Oujda, Morocco
| | - Hazem A. Ghabbour
- Department of Medicinal Chemistry, Faculty of Pharmacy, University of Mansoura, Mansoura, Egypt
| | - Yahia N. Mabkhot
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Khalid University, Saudi Arabia
| | - My El Abbes Faouzi
- Laboratory of Pharmacology and Toxicology, Biopharmaceutical and Toxicological Analysis Research Team, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Morocco
| | - M’hammed Ansar
- Laboratory of Medicinal Chemistry, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Morocco
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Functional substituted Cu(II) Schiff base complexes, syntheses, X-ray and theoretical characterizations, and investigations of their polyphenol oxidase- and peroxidase-like activities. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.129975] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Naves LFN, Borges NM, Custodio JMF, Vaz WF, Bastos RM, Cunha S, Napolitano HB. Structural insights into the biological activity of a thioxopyrimidine derivative. J Mol Model 2021; 27:73. [PMID: 33547505 DOI: 10.1007/s00894-021-04700-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2020] [Accepted: 01/27/2021] [Indexed: 11/28/2022]
Abstract
Bacterial resistance to the main widespread antibiotics, such as those based on quinolones, is a concern of the scientific community, leading to the search for new classes of molecules that can be used as an alternative. Here, we investigate the crystalline and chemical characteristics of a thioxopyrimide to understand its demonstrated biological activity and to identify which portion of the molecule can be used as a framework to develop new antibiotics. For this purpose, structural studies of ethyl 4-methyl-2-phenyl-6-thioxo-1,6-dihydro-5-pyrimidinecarboxylate were carried out aided by Hirshfeld surface analysis, as well as theoretical calculations on frontier molecular orbitals, molecular electrostatic potential, and conformational stability, in addition to docking studies targeting topoisomerase IV. The docking results show a reasonable accommodation of the molecule at the topoisomerase IV binding site and interact mainly by hydrogen bonds between the thioxopyrimidine portion with Glu198, Thr292, and Gly225, aided by hydrophobic interactions involving the rest of the molecule. These results suggest a relationship between the antibacterial activity shown mainly with the 4-thioxopyrimidine portion, leading to the investigation of new compounds that use this scaffold.
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Affiliation(s)
- Luiz F N Naves
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil
| | - Nadia M Borges
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil
| | - Jean M F Custodio
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil. .,Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN, 46665, USA.
| | - Wesley F Vaz
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil
| | - Rodrigo M Bastos
- Instituto de Química, Universidade Federal da Bahia, Campus de Ondina, Salvador, BA, 40170-115, Brazil
| | - Silvio Cunha
- Instituto de Química, Universidade Federal da Bahia, Campus de Ondina, Salvador, BA, 40170-115, Brazil
| | - Hamilton B Napolitano
- Grupo de Química Teórica e Estrutural de Anápolis, Universidade Estadual de Goiás, Anápolis, GO, 75001-970, Brazil
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