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Vergara JM, Correa JD, Mora-Ramos ME, Flórez E. Unraveling the influence of defects on Sulfonamide adsorption onto Blue-phosphorene nanotube using density functional theory. PLoS One 2025; 20:e0312034. [PMID: 40127061 PMCID: PMC11932492 DOI: 10.1371/journal.pone.0312034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 09/30/2024] [Indexed: 03/26/2025] Open
Abstract
Sulfonamide antibiotics are commonly used in human therapy. Consequently, pharmaceutical residues may seep into the surface and groundwater, contaminating the aquatic environment. Adsorption is the most widely used method for removing these contaminants from water bodies. This study investigates the efficiency of (14, 14) armchair and (14, 0) zigzag blue phosphorene-based nanotubes (BPNT) as adsorbents of three popular toxic antibiotics, Sulfanilamide (SAM), Sulfadimethoxine (SMX), and Sulfadiazine (SDZ), from water bodies. All calculations are performed using density functional theory. Analyzed molecules are weakly adsorbed on the pristine BPNTs with an adsorption energy of about -0.312, -0.285, and -0.377 eV. Further, electronic properties of the antibiotics-adsorbed BPNTs are investigated. The effect of single-vacancy BPNTs on the adsorption affinity of antibiotic molecules was studied. Compared with pristine systems, despite the increase in reactivity of zigzag BPNTs to the sulfonamides, armchair configurations show a transition from bipolar-magnetic semiconductor to a non-magnetic metallic system, suggesting that defective armchair BPNTs can also be employed as a sensor for antibiotic molecules. Single-vacancies increase the [Formula: see text] values of all studied systems by up to 89%, indicating an improvement in the capacity of BPNTs to adsorb these biologically active sulfonamide-based compounds.
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Affiliation(s)
- José M. Vergara
- Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia
| | - Julian D. Correa
- Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia
| | - Miguel E. Mora-Ramos
- Centro de Investigación en Ciencias, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos, México
| | - Elizabeth Flórez
- Facultad de Ciencias Básicas, Universidad de Medellín, Medellín, Colombia
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2
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Wang Z, Wu H, Wu Q, Zhao YM, Shen L. Magnetic ε-Phosphorene for Sensing Greenhouse Gas Molecules. Molecules 2023; 28:5402. [PMID: 37513274 PMCID: PMC10384796 DOI: 10.3390/molecules28145402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 07/08/2023] [Accepted: 07/12/2023] [Indexed: 07/30/2023] Open
Abstract
It is critical for gas sensors that sense greenhouse gas molecules to have both good sensitivity and selectivity for water molecules in the ambient environment. Here, we study the charge transfer, IV curves, and electric field tuning of vanadium-doped monolayer ϵ-phosphorene as a sensor for NO, NO2, and H2O gas molecules via first-principle and transport calculations. We find that the paramagnetic toxic molecules of NO and NO2 have a high adsorption energy on V-ϵ-phosphorene, which originates from a large amount of charge transfer driven by the hybridisation of the localised spin states of the host with the molecular frontier orbital. Using the non-equilibrium Green's function, we investigate the IV responses with respect to the adsorption of different molecules to study the performance of gas molecule sensors. Our IV curves show a larger amount of changes in resistance of the paramagnetic NO and NO2 than nonmagnetic H2O gas molecules, suggesting both sensitivity and selectivity. Moreover, our calculations show that an applied external electric field (gate voltage) can effectively tune the amount of charge transfer. More charge transfer makes the sensor more sensitive to the molecule, while less charge transfer can reduce the adsorption energy and remove the adsorbed molecules, allowing for the repeated use of the sensor.
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Affiliation(s)
- Zengyao Wang
- Engineering Science Programme, Faculty of Engineering, National University of Singapore, Singapore 117575, Singapore
| | - Hao Wu
- Department of Mechanical Engineering, National University of Singapore, Singapore 117575, Singapore
| | - Qingyun Wu
- Science, Mathematics and Technology, Singapore University of Technology and Design, 8 Somapah Road, Singapore 487372, Singapore
| | - Yi-Ming Zhao
- Department of Mechanical Engineering, National University of Singapore, Singapore 117575, Singapore
| | - Lei Shen
- Engineering Science Programme, Faculty of Engineering, National University of Singapore, Singapore 117575, Singapore
- Department of Mechanical Engineering, National University of Singapore, Singapore 117575, Singapore
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Zhang L, Zhang JC, Shi LF, Cheng X, Chen JH, Sun WM. On the possibility of using the Ti@Si 16 superatom as a novel drug delivery carrier for different drugs: A DFT study. J Mol Graph Model 2023; 118:108378. [PMID: 36423518 DOI: 10.1016/j.jmgm.2022.108378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 11/05/2022] [Accepted: 11/15/2022] [Indexed: 11/17/2022]
Abstract
The potential application of an experimentally synthesized superatom Ti@Si16 as a novel drug carrier for cisplatin (DDP), isoniazid (INH), acetylsalicylic acid (ASA), 5-fluorouracil (5-Fu), and favipiravir (FPV) has been explored by density functional theory. It is observed that the Pt atom of DDP can be effectively absorbed on Ti@Si16 via a "donation-back donation" electron transfer mechanism, resulting in a moderate adsorption energy of -19.95 kcal/mol for DDP@[Ti@Si16]. As for INH, it prefers to combine with Ti@Si16 via the N atom of pyridine ring by forming a strongly polar N-Si bond. Differently, the interaction between Ti@Si16 and the ASA, 5-Fu, and FPV drugs is dominated by the Van der Waals interaction. Our results reveal that DDP@[Ti@Si16] possesses a moderate recovery time under body temperature, which benefits the desorption of DDP from Ti@Si16. More importantly, the release of DDP drug from the Ti@Si16 surface can be effectively controlled by exerting small orientation external electric fields on the DDP@[Ti@Si16] complex. Therefore, this study demonstrates that Ti@Si16 can serve as a promising drug carrier for DDP, and thus will further expand its practical applications in the biomedical field.
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Affiliation(s)
- Li Zhang
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China; Department of Pharmacy, Sanming First Hospital, Affiliated Hospital of Fujian Medical University, Sanming, 365000, Fujian Province, PR China
| | - Jia-Chen Zhang
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Ling-Fei Shi
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Xin Cheng
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China
| | - Jing-Hua Chen
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China.
| | - Wei-Ming Sun
- Fujian Key Laboratory of Drug Target Discovery and Structural and Functional Research, The School of Pharmacy, Fujian Medical University, Fuzhou, 350108, PR China; School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, Anhui, 230026, PR China.
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4
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Jyothi MS, Nagarajan V, Chandiramouli R. M-cymene and m-xylene adsorption studies on hex-star arsenene nanosheets – a DFT investigation. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2140082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- M. S. Jyothi
- Department of Chemistry, AMC Engineering College, Bengaluru, India
| | - V. Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Tirumalaisamudram, India
| | - R. Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Tirumalaisamudram, India
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Nagarajan V, Chandiramouli R. Acetaminophen and mepirizole molecular adsorption studies on novel ζ – phosphorene nanotube based on first-principles investigation. MOLECULAR SIMULATION 2022. [DOI: 10.1080/08927022.2022.2125543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- V. Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - R. Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
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Nagarajan V, Deepika K, Swetha B, Reddy KM, Chandiramouli R. δ-antimonene nanosheet as a sensing element for ethyl acetate and butyl acetate – a first-principles study. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2103469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- V. Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - Kota Deepika
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - Baswa Swetha
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - Korni Manideep Reddy
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - R. Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
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Darugar V, Vakili M, Antonia Brandán S. Electrical transport and NDR property on the cis-trans photo-isomerization of (1R,3S)-2,2-dimethyl-3-(2-methylprop-1-en-1-yl)cyclopropanecarboxylate as an optical molecular switch; A DFT-NEGF study. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139818] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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8
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Nagarajan V, Chandiramouli R. CS 2 And H 2S adsorption studies on novel hex-star phosphorene nanosheet – a DFT perspective. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2066027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- V. Nagarajan
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - R. Chandiramouli
- School of Electrical & Electronics Engineering, SASTRA Deemed University, Thanjavur, India
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Adsorption studies of SF6 and decomposed constituents on 4-8 arsenene nanotubes – a first-principles study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113663] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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10
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Carbonyl sulfide and dimethyl sulfide adsorption studies on novel square-octagon antimonene sheets – a first-principles study. Chem Phys 2022. [DOI: 10.1016/j.chemphys.2022.111504] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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11
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Rafique J, Afzal QQ, Perveen M, Iqbal J, Akhter MS, Nazir S, Al-Buriahi MS, Alomairy S, Alrowaili ZA. Drug delivery of carvedilol (cardiovascular drug) using phosphorene as a drug carrier: a DFT study. JOURNAL OF TAIBAH UNIVERSITY FOR SCIENCE 2022. [DOI: 10.1080/16583655.2021.2021789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Javeria Rafique
- Department of Chemistry, University of Agriculture, Faisalabad, Pakistan
| | - Qaba Qusain Afzal
- Department of Chemistry, University of Agriculture, Faisalabad, Pakistan
| | - Mehvish Perveen
- Department of Chemistry, University of Agriculture, Faisalabad, Pakistan
| | - Javed Iqbal
- Department of Chemistry, University of Agriculture, Faisalabad, Pakistan
- Punjab Bio-Energy Institute, University of Agriculture, Faisalabad, Pakistan
| | | | - Sidra Nazir
- Faisalabad Institute of Cardiology, Faisalabad, Pakistan
| | | | - Sultan Alomairy
- Department of Physics, College of Science, Taif University, Taif, Saudi Arabia
| | - Z. A. Alrowaili
- Department of Physics, College of Science, Jouf University, Sakaka, Saudi Arabia
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12
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Jyothi M, Nagarajan V, Chandiramouli R. Adsorption studies of 2,3-butanedione and acetic acid on ζ-phosphorene sheets based on the first-principles study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2021.113548] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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13
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Chandiramouli R, Deepika K, Manideep Reddy K, Swetha B, Nagarajan V. Methylcyclohexane and methyl methacrylate sensing studies using γ-arsenene nanoribbon – a first-principles investigation. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113595] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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14
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Cao Y, Vahid AF, Sadeghzadeh FS, Soleimanpour H, Ahmadi S, Heravi MRP. A DFT study on the Ag-decorated AlP nanosheets as chemical sensor for recognition of adrucil drug. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113484] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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15
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Ullah F, Ayub K, Gilani MA, Imran M, Mahmood T. C10F as a potential anode material for alkali-ion batteries; a quantum chemical approach. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113470] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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16
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Molecular interaction studies of styrene on single and double-walled square-octagon phosphorene nanotubes – First-principles investigation. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.139149] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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17
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Cortés-Arriagada D. High stability and properties of adsorbed polycyclic aromatic hydrocarbons (PAHs) onto phosphorene: An atomistic DFT study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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18
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Nagarajan V, Sundar S, Chandiramouli R. Interaction studies of tuberculosis biomarker vapours on novel beta arsenene sheets – A DFT insight. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2021.113426] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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19
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Zhang L, Ye YL, Li XH, Chen JH, Sun WM. On the potential of all-boron fullerene B40 as a carrier for anti-cancer drug nitrosourea. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117533] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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20
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Nagarajan V, Chandiramouli R. ϕ-Phosphorene sheets as adsorbing medium for dichloromethane and tetrachloroethylene molecules – a DFT outlook. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1986163] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- V. Nagarajan
- School of Electrical and Electronics Engineering, SASTRA Deemed University, Thanjavur, India
| | - R. Chandiramouli
- School of Electrical and Electronics Engineering, SASTRA Deemed University, Thanjavur, India
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21
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Hao J, Wang Z, Wang Y. Computational investigation of lithium intercalation in single-walled zigzag blue phosphorene nanotubes. Chem Phys 2021. [DOI: 10.1016/j.chemphys.2021.111297] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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22
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Twisted bilayer arsenene sheets as a chemical sensor for toluene and M-xylene vapours - A DFT investigation. J Mol Graph Model 2021; 109:108034. [PMID: 34555724 DOI: 10.1016/j.jmgm.2021.108034] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 09/02/2021] [Accepted: 09/09/2021] [Indexed: 12/14/2022]
Abstract
2D (two-dimensional) materials are emerging in today's world. Among the 2D materials, arsenene sheets are prominently used as chemical and biosensors. In the present work, the twisted bilayer arsenene sheets (TB-AsNS) are used to adsorb toluene and M-xylene vapours. Moreover, the band gap of pristine TB-AsNS is calculated to be 0.437 eV. Besides, the surface adsorption of toluene and M-xylene vapours modify the electronic properties of TB-AsNS noticed from the band structure, density of states, and electron density difference diagrams. The surface assimilation of target toluene and M-xylene on TB-AsNS falls in the physisorption regime facilitating the adsorption and desorption of molecules. Also, the charge transfer analysis infers that TB-AsNS acts as acceptor and target molecules play as donors. The findings support that TB-AsNS can be used as a sensing medium towards M-xylene and toluene.
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