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Leyva-Parra L, Pino-Rios R. Update for Isomerization Stabilization Energies: The Fulvenization Approach. ACS OMEGA 2024; 9:1436-1442. [PMID: 38222592 PMCID: PMC10785285 DOI: 10.1021/acsomega.3c07881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 11/28/2023] [Accepted: 12/04/2023] [Indexed: 01/16/2024]
Abstract
An alternative approach for calculating aromatic stabilization energies is proposed based on transforming an (anti)aromatic ring into a fulvene isomer. This fulvenization process gives a value of 34.05 kcal·mol-1 for benzene in the singlet state and a value of -17.85 kcal·mol-1 in the triplet state. Additionally, it is possible to use experimental values (as long as they exist) for the calculation as the gas-phase formation enthalpies of benzene and fulvene, whose difference is 33.72 kcal·mol-1. On the other hand, this same approach has been evaluated on several six-membered rings, including those persubstituted, biradicals, azines, and inorganic analogues, giving results in agreement with those reported in the literature using different criteria. Additionally, it is possible to differentiate the aromaticity of the rings in polycyclic aromatic hydrocarbons according to Clar's rules. Assigning the (anti)aromatic character in various nonbenzenoid rings (neutral and charged), except for five- and seven-membered rings, is also possible. The construction of the fulvene isomers in PAHs is set such that nonaromaticity-related effects are not considered. The results show that the fulvenization approach is an effective and efficient approach that can serve as an alternative or complement to existing tools.
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Affiliation(s)
- Luis Leyva-Parra
- Departamento
de Ciencias Químicas, Centro de Química Teórica
& Computacional (CQT&C), Universidad
Andrés Bello, Facultad de Ciencias Exactas, Avenida República 275, 8370146 Santiago de Chile, Chile
| | - Ricardo Pino-Rios
- Instituto
de Estudios de la Salud, Universidad Arturo
Prat, 1100000 Iquique, Chile
- Química
y Farmacia, Facultad de Ciencias de la Salud, Universidad Arturo Prat, Casilla 121, 1100000 Iquique, Chile
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2
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Báez-Grez R, Yáñez O, Pino-Rios R. Electronic Transmutation Concept: Is the Inverse Process Possible? An Evaluation of Main Group Compounds. ACS OMEGA 2023; 8:2880-2886. [PMID: 36713707 PMCID: PMC9878657 DOI: 10.1021/acsomega.2c03865] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 12/07/2022] [Indexed: 06/18/2023]
Abstract
The electronic transmutation (ET) concept states that when an element with atomic number Z gains an electron, it transmutes into a Z + 1 element, leading to species that possess similar chemical bonding patterns and geometric structures regarding the original (Z + 1) element. In this work, the opposite concept, that is, the inverse ET, is assessed. For this purpose, several main group compounds have been analyzed in terms of the adaptive natural density partitioning. The obtained results suggest that when an atom Z loses an electron, it transmutes into a Z - 1 atom, acquiring its geometrical structure and bonding pattern.
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Affiliation(s)
- Rodrigo Báez-Grez
- Computational
and Theoretical Chemistry Group, Departamento de Ciencias Químicas,
Facultad de Ciencias Exactas, Universidad
Andres Bello, República
275, Santiago 8320000, Chile
| | - Osvaldo Yáñez
- Facultad
de Ingeniería y Negocios, Universidad
de las Américas, Santiago 7500000, Chile
| | - Ricardo Pino-Rios
- Química
y Farmacia, Facultad de Ciencias de la Salud, Universidad Arturo Prat. Casilla 121, Iquique 1100000, Chile
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Báez-Grez R, Pino-Rios R. Evaluation of Slight Changes in Aromaticity through Electronic and Density Functional Reactivity Theory-Based Descriptors. ACS OMEGA 2022; 7:21939-21945. [PMID: 35785290 PMCID: PMC9245093 DOI: 10.1021/acsomega.2c02291] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 05/13/2022] [Indexed: 06/15/2023]
Abstract
Aromaticity is a useful tool to rationalize the structure, stability, and reactivity in several compounds. Although aromaticity is not directly an observable, it is well accepted that electronic delocalization around the molecular ring is a key stabilizing feature of aromatic compounds. This contribution presents a systematic evaluation of the capability of delocalization and reactivity criteria to describe aromaticity in a set of fluorinated benzenes. The aromaticity indices are compared with quantities obtained from the magnetic criteria of aromaticity, i.e., the strength of the ring current induced by an external magnetic field and the popular NICS zz (1) index. In this evaluation, the indices based on delocalization criteria used are aromatic fluctuation index (FLU), para-delocalization index (PDI), PDIπ, and the multicenter delocalization index (MCI). In addition, indices based on the bifurcation values of scalar functions are derived from electron density such as electron localization function (the π contribution, ELFπ) and the π contribution of the localized orbital locator (LOLπ). Furthermore, reactivity indices based on chemical reactivity and the information-theoretic (reactivity) approach are para-linear response (PLR), Shannon entropy, Fisher information, and Ghosh-Berkowitz-Parr (GBP) entropy. The results obtained show that the delocalization-based indicators present a high sensitivity to slight changes in aromaticity and that the reactivity criterion can be considered as a complementary tool for the study of this phenomenon, even when these changes are minimal. These results encourage the use of multiple indicators for a complete understanding of aromaticity in various chemical compounds.
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Affiliation(s)
- Rodrigo Báez-Grez
- Computational
and Theoretical Chemistry Group, Departamento de Ciencias Químicas,
Facultad de Ciencias Exactas, Universidad
Andres Bello, República 275, Santiago 8370146, Chile
| | - Ricardo Pino-Rios
- Instituto
de Ciencias Químicas Aplicadas, Facultad de Ingeniería, Universidad Autónoma de Chile, 7500912 Santiago, Chile
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Eno EA, Louis H, Unimuke TO, Egemonye TC, Adalikwu SA, Agwupuye JA, Odey DO, Abu AS, Eko IJ, Ifeatu CE, Ntui TN. Synthesis, characterization, and theoretical investigation of 4-chloro-6(phenylamino)-1,3,5-triazin-2-yl)asmino-4-(2,4-dichlorophenyl)thiazol-5-yl-diazenyl)phenyl as potential SARS-CoV-2 agent. PHYSICAL SCIENCES REVIEWS 2022. [DOI: 10.1515/psr-2021-0161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Abstract
The synthesis of 4-chloro-6(phenylamino)-1,3,5-triazin-2-yl)amino-4-(2,4 dichlorophenyl)thiazol-5-yl-diazenyl)phenyl is reported in this work with a detailed structural and molecular docking study on two SARS-COV-2 proteins: 3TNT and 6LU7. The studied compound has been synthesized by the condensation of cyanuric chloride with aniline and characterized with various spectroscopic techniques. The experimentally obtained spectroscopic data has been compared with theoretical calculated results achieved using high-level density functional theory (DFT) method. Stability, nature of bonding, and reactivity of the studied compound was evaluated at DFT/B3LYP/6-31 + (d) level of theory. Hyper-conjugative interaction persisting within the molecules which accounts for the bio-activity of the compound was evaluated from natural bond orbital (NBO) analysis. Adsorption, Distribution, Metabolism, Excretion and Toxicity (ADMET) properties of the experimentally synthesized compound was studied to evaluate the pharmacological as well as in silico molecular docking against SARS-CoV-2 receptors. The molecular docking result revealed that the investigated compound exhibited binding affinity of −9.3 and −8.8 for protein 3TNT and 6LU7 respectively. In conclusion, protein 3TNT with the best binding affinity for the ligand is the most suitable for treatment of SARS-CoV-2.
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Affiliation(s)
- Ededet A. Eno
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Pure and Applied Chemistry, Faculty of Physical Sciences , University of Calabar , Calabar , Nigeria
| | - Hitler Louis
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Pure and Applied Chemistry, Faculty of Physical Sciences , University of Calabar , Calabar , Nigeria
| | - Tomsmith O. Unimuke
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Pure and Applied Chemistry, Faculty of Physical Sciences , University of Calabar , Calabar , Nigeria
| | - ThankGod C. Egemonye
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Pure and Applied Chemistry, Faculty of Physical Sciences , University of Calabar , Calabar , Nigeria
| | - Stephen A. Adalikwu
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
| | - John A. Agwupuye
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Pure and Applied Chemistry, Faculty of Physical Sciences , University of Calabar , Calabar , Nigeria
| | - Diana O. Odey
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Biochemistry, Faculty of Physical Sciences , Cross River University of Technology , Calabar , Nigeria
| | - Abu Solomon Abu
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Marine Biology, Faculty of Biology Sciences , University of Calabar , Calabar , Nigeria
| | - Ishegbe J. Eko
- Department of Polymer and Textile Engineering , Ahmadu Bello University Zaria , Kaduna , Nigeria
| | - Chukwudubem E. Ifeatu
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
| | - Tabe N. Ntui
- Computational and Bio-Simulation Research Group , University of Calabar, Calabar , Nigeria
- Department of Chemistry, Faculty of Physical Sciences , Cross River University of Technology , Calabar , Nigeria
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Báez-Grez R, Pino-Rios R. The hidden aromaticity in borazine. RSC Adv 2022; 12:7906-7910. [PMID: 35424723 PMCID: PMC8982269 DOI: 10.1039/d1ra06457f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 02/25/2022] [Indexed: 02/05/2023] Open
Abstract
The aromaticity of borazine (B3N3H6), also known as the inorganic benzene, is a controversial issue since this compound has several characteristics that could qualify it as an aromatic compound. However, recent studies using magnetic criteria indicate that this compound should be considered as a non-aromatic system. This assignment is mainly due to diatropic currents in the nitrogen atoms without observation of ring currents. The present work shows by means of the magnetic criteria that borazine has a ring current hidden by the local contributions of degenerate orbitals π1 and π2. Additionally, the study of borazine's first triplet state antiaromaticity using the magnetic and energetic criteria by means of isomerization stabilization energies (ISEs) together with Baird's and Hückel's rules suggests that borazine is best described as an (weakly) aromatic system.
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Affiliation(s)
- Rodrigo Báez-Grez
- Computational and Theoretical Chemistry Group, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andres Bello República 498 Santiago Chile
| | - Ricardo Pino-Rios
- Laboratorio de Química Teórica, Facultad de Química y Biología, Universidad de Santiago de Chile (USACH) Av. Libertador Bernardo O'Higgins 3363 Santiago Estación Central, Región Metropolitana Chile
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