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Nern A, Loesche F, Takemura SY, Burnett LE, Dreher M, Gruntman E, Hoeller J, Huang GB, Januszewski M, Klapoetke NC, Koskela S, Longden KD, Lu Z, Preibisch S, Qiu W, Rogers EM, Seenivasan P, Zhao A, Bogovic J, Canino BS, Clements J, Cook M, Finley-May S, Flynn MA, Hameed I, Fragniere AMC, Hayworth KJ, Hopkins GP, Hubbard PM, Katz WT, Kovalyak J, Lauchie SA, Leonard M, Lohff A, Maldonado CA, Mooney C, Okeoma N, Olbris DJ, Ordish C, Paterson T, Phillips EM, Pietzsch T, Salinas JR, Rivlin PK, Schlegel P, Scott AL, Scuderi LA, Takemura S, Talebi I, Thomson A, Trautman ET, Umayam L, Walsh C, Walsh JJ, Xu CS, Yakal EA, Yang T, Zhao T, Funke J, George R, Hess HF, Jefferis GSXE, Knecht C, Korff W, Plaza SM, Romani S, Saalfeld S, Scheffer LK, Berg S, Rubin GM, Reiser MB. Connectome-driven neural inventory of a complete visual system. Nature 2025:10.1038/s41586-025-08746-0. [PMID: 40140576 DOI: 10.1038/s41586-025-08746-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Accepted: 02/06/2025] [Indexed: 03/28/2025]
Abstract
Vision provides animals with detailed information about their surroundings and conveys diverse features such as colour, form and movement across the visual scene. Computing these parallel spatial features requires a large and diverse network of neurons. Consequently, from flies to humans, visual regions in the brain constitute half its volume. These visual regions often have marked structure-function relationships, with neurons organized along spatial maps and with shapes that directly relate to their roles in visual processing. More than a century of anatomical studies have catalogued in detail cell types in fly visual systems1-3, and parallel behavioural and physiological experiments have examined the visual capabilities of flies. To unravel the diversity of a complex visual system, careful mapping of the neural architecture matched to tools for targeted exploration of this circuitry is essential. Here we present a connectome of the right optic lobe from a male Drosophila melanogaster acquired using focused ion beam milling and scanning electron microscopy. We established a comprehensive inventory of the visual neurons and developed a computational framework to quantify their anatomy. Together, these data establish a basis for interpreting how the shapes of visual neurons relate to spatial vision. By integrating this analysis with connectivity information, neurotransmitter identity and expert curation, we classified the approximately 53,000 neurons into 732 types. These types are systematically described and about half are newly named. Finally, we share an extensive collection of split-GAL4 lines matched to our neuron-type catalogue. Overall, this comprehensive set of tools and data unlocks new possibilities for systematic investigations of vision in Drosophila and provides a foundation for a deeper understanding of sensory processing.
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Affiliation(s)
- Aljoscha Nern
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Frank Loesche
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Shin-Ya Takemura
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Laura E Burnett
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Marisa Dreher
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Judith Hoeller
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Gary B Huang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Nathan C Klapoetke
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Sanna Koskela
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Kit D Longden
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Zhiyuan Lu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Stephan Preibisch
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Wei Qiu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Edward M Rogers
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Arthur Zhao
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - John Bogovic
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Brandon S Canino
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Jody Clements
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Michael Cook
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Miriam A Flynn
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Imran Hameed
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Alexandra M C Fragniere
- MRC Laboratory of Molecular Biology, Cambridge, UK
- Department of Zoology, Cambridge University, Cambridge, UK
| | - Kenneth J Hayworth
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Philip M Hubbard
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - William T Katz
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Julie Kovalyak
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Shirley A Lauchie
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Meghan Leonard
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Alanna Lohff
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Charli A Maldonado
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Caroline Mooney
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Nneoma Okeoma
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Donald J Olbris
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Christopher Ordish
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Tyler Paterson
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Emily M Phillips
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Tobias Pietzsch
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | | | - Patricia K Rivlin
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Philipp Schlegel
- MRC Laboratory of Molecular Biology, Cambridge, UK
- Department of Zoology, Cambridge University, Cambridge, UK
| | - Ashley L Scott
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Louis A Scuderi
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Satoko Takemura
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Iris Talebi
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Alexander Thomson
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Eric T Trautman
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Lowell Umayam
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Claire Walsh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - John J Walsh
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - C Shan Xu
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Emily A Yakal
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Tansy Yang
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Ting Zhao
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Jan Funke
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Reed George
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Harald F Hess
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Gregory S X E Jefferis
- MRC Laboratory of Molecular Biology, Cambridge, UK
- Department of Zoology, Cambridge University, Cambridge, UK
| | - Christopher Knecht
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Wyatt Korff
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Stephen M Plaza
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Sandro Romani
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Stephan Saalfeld
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Louis K Scheffer
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA
| | - Stuart Berg
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
| | - Gerald M Rubin
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
| | - Michael B Reiser
- Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA.
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