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Malaria research supported with open access data. Data Brief 2022; 41:108009. [PMID: 35252506 PMCID: PMC8888349 DOI: 10.1016/j.dib.2022.108009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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Zouré AA, Serteyn L, Somda Z, Badolo A, Francis F. Proteomic Investigation on Anopheles gambiae in Burkina Faso Related to Insecticide Pressures from Different Climatic Regions. Proteomics 2020; 20:e1900400. [PMID: 32108434 DOI: 10.1002/pmic.201900400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Revised: 02/21/2020] [Indexed: 11/09/2022]
Abstract
In Sub-Saharan Africa, An. gambiae sensu lato (s.l.) Giles 190, largely contributes to malaria transmission. Therefore, the authors carry out a proteomic analysis to compare its metabolic state, depending on different pesticide pressures by selecting areas with/without cotton crops. The proteomes data are available via ProteomeXchange with identifier PXD016300. From a total of 1.182 identified proteins, 648 are retained for further statistical analysis and are attributed to biological functions, the most important of which being energy metabolism (120 proteins) followed by translation-biogenesis (74), cytoskeleton (71), stress response (62), biosynthetic process (60), signalling (44), cellular respiration (38), cell redox homeostasis (25), DNA processing (17), pheromone binding (10), protein folding (9), RNA processing (9), other proteins (26) and unknown functions (83). In the Sudano-Sahelian region, 421 (91.3%) proteins are found in samples from areas both with and without cotton crops. By contrast, in the Sahelian region, only 271 (55.0%) are common to both crop areas, and 233 proteins are up-regulated from the cotton area. The focus is placed on proteins with putative roles in insecticide resistance, according to literature. This study provides the first whole-body proteomic characterisation of An. gambiae s.l. in Burkina Faso, as a framework to strengthen vector control strategies.
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Affiliation(s)
- Abdou Azaque Zouré
- Institute of Health Sciences Research, (IRSS/CNRST)/Department of Biomedical and Public Health, Ouagadougou, 03 BP 7192, Burkina Faso.,Functional and Evolutionary Entomology, TERRA, Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés 2, Gembloux, 5030, Belgium
| | - Laurent Serteyn
- Functional and Evolutionary Entomology, TERRA, Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés 2, Gembloux, 5030, Belgium
| | - Zéphirin Somda
- Laboratoire d'Entomologie Fondamentale et Appliquée, UFR/SVT, Université Joseph Ki-Zerbo, BP 7021, Ouagadougou, 03, Burkina Faso
| | - Athanase Badolo
- Laboratoire d'Entomologie Fondamentale et Appliquée, UFR/SVT, Université Joseph Ki-Zerbo, BP 7021, Ouagadougou, 03, Burkina Faso
| | - Frédéric Francis
- Functional and Evolutionary Entomology, TERRA, Gembloux Agro-Bio Tech, University of Liège, Passage des Déportés 2, Gembloux, 5030, Belgium
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Dey G, Mohanty AK, Sreenivasamurthy SK, Kumar M, Keshava Prasad TS, Kumar A. Proteome data of Anopheles stephensi salivary glands using high-resolution mass spectrometry analysis. Data Brief 2019; 21:2554-2561. [PMID: 30761337 PMCID: PMC6288417 DOI: 10.1016/j.dib.2018.11.070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 11/14/2018] [Indexed: 10/29/2022] Open
Abstract
The data article reports data of the proteins expressed in female Anopheles stephensi salivary glands. Proteomic data were acquired using high-resolution mass spectrometers - Orbitrap-Velos and Orbitrap-Elite. Samples derived from adult female A. stephensi salivary glands led to the identification of 4390 proteins. Mass spectrometry data were analyzed on Proteome Discoverer (Version 2.1) platform with Sequest and Mascot search engines. The identified proteins were analyzed for their Gene Ontology annotation, interaction network and their possible roles in vector-parasite interaction. The data provided here are related to our published article "Integrating transcriptomics and proteomics data for accurate assembly and annotation of genomes" (Prasad et al., 2017) [1].
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Affiliation(s)
- Gourav Dey
- Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India.,Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Manipal 576104, India
| | - Ajeet Kumar Mohanty
- ICMR-National Institute of Malaria Research, Field Unit, Campal, Panaji, Goa 403001, India
| | - Sreelakshmi K Sreenivasamurthy
- Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Manipal 576104, India
| | - Manish Kumar
- Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Manipal 576104, India
| | - T S Keshava Prasad
- Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India.,Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Manipal 576104, India
| | - Ashwani Kumar
- ICMR-National Institute of Malaria Research, Field Unit, Campal, Panaji, Goa 403001, India
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Dey G, Mohanty AK, Kumar M, Sreenivasamurthy SK, Patil AH, Keshava Prasad TS, Kumar A. Proteome data of Anopheles stephensi ovary using high-resolution mass spectrometry. Data Brief 2018; 20:723-731. [PMID: 30211266 PMCID: PMC6129740 DOI: 10.1016/j.dib.2018.08.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 08/10/2018] [Accepted: 08/21/2018] [Indexed: 11/20/2022] Open
Abstract
This article contains data on the proteins expressed in the ovaries of Anopheles stephensi, a major vector of malaria in India. Data acquisition was performed using a high-resolution Orbitrap-Velos mass spectrometer. The acquired MS/MS data was searched against An. stephensi protein database comprising of 11,789 sequences. Overall, 4407 proteins were identified, functional analysis was performed for the identified proteins and a protein-protein interaction map predicted. The data provided here is also related to a published article - “Integrating transcriptomics and proteomics data for accurate assembly and annotation of genomes” (Prasad et al., 2017) [1].
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Affiliation(s)
- Gourav Dey
- Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore 575018, India.,Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Madhav Nagar, Manipal 576104, India
| | - Ajeet Kumar Mohanty
- ICMR-National Institute of Malaria Research, Field Unit, Campal, Panaji, Goa 403001, India
| | - Manish Kumar
- Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Madhav Nagar, Manipal 576104, India
| | - Sreelakshmi K Sreenivasamurthy
- Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,Manipal Academy of Higher Education, Madhav Nagar, Manipal 576104, India
| | - Arun H Patil
- Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore 575018, India.,Institute of Bioinformatics, International Tech Park, Bangalore 560066, India.,School of Biotechnology, Kalinga Institute of Industrial Technology, Bhubaneswar, 751024, India
| | - T S Keshava Prasad
- Center for Systems Biology and Molecular Medicine, Yenepoya Research Center, Yenepoya (Deemed to be University), Mangalore 575018, India.,Institute of Bioinformatics, International Tech Park, Bangalore 560066, India
| | - Ashwani Kumar
- ICMR-National Institute of Malaria Research, Field Unit, Campal, Panaji, Goa 403001, India
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