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Liu S, Chen S, Zhang K, Xu N, Ni X, Yue L, He M. Exogenous Hydrogen sulfide attenuates cadmium toxicity to Chrysanthemum (Chrysanthemum indicum) by modulating glutathione synthesis and cadmium adsorption capacity in the cell wall. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 223:109860. [PMID: 40194502 DOI: 10.1016/j.plaphy.2025.109860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2025] [Revised: 03/22/2025] [Accepted: 03/29/2025] [Indexed: 04/09/2025]
Abstract
Soil cadmium (Cd) contamination leads to plant toxicity and poses a risk to human health both directly and indirectly through the food chain. Hydrogen sulfide (H2S), a novel gaseous signaling molecule, has been shown to enhance plant tolerance to various abiotic stresses. In this study, the potential of H2S in mitigating Cd toxicity in chrysanthemum (Chrysanthemum indicum) was investigated through physiological, biochemical and transcriptomic analyses. Results showed that the application of exogenous H2S resulted Cd accumulation in the roots by 21.15 %, while reducing Cd in the aboveground parts by 13.21 %. It was further found that H2S increased the pectin and hemicellulose content by 50.09 % and 49.79 %, respectively, through the regulation of cell wall polysaccharide synthesis-related genes, leading to changes in root functional group content and cell wall adsorption capacity for cadmium ions (Cd2+). Additionally, H2S also promoted the synthesis of GSH and PCs by regulating the expression of genes related to sulfur metabolism, chelating free Cd2+ in the cytoplasm, and reducing their harmful effects on the organelles. It was also found that exogenous H2S may have regulated the expression of transporter proteins by modulating the expression of transcription factors (MYB, AP2/ERF, and WRKY), thereby affecting the uptake, transport, and accumulation of Cd2+. In conclusion, exogenous H2S reduced the free Cd2+ content in the cytoplasm by promoting the adsorption of Cd2+ in the root cell walls and facilitating the synthesis of GSH and PCs in the cells, which in turn alleviated the toxic effects of Cd2+ on chrysanthemum.
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Affiliation(s)
- Shuguang Liu
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China
| | - Shengyan Chen
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China
| | - Kaiyuan Zhang
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China
| | - Ning Xu
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China
| | - Xingyu Ni
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China
| | - Liran Yue
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China.
| | - Miao He
- College of Landscape Architecture, Northeast Forestry University, Harbin, 150040, China.
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Nguyen DK, Nguyen TP, Lin CC, Ly TT, Li YR, Chang CH, Nguyen VA, Trinh NN, Huang HJ. Transcriptome analysis reveals the role of microbial volatile 3-methyl-1-butanol-induced salt stress tolerance in rice (Oryza sativa L.) seedlings through antioxidant defense system. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2025; 223:109830. [PMID: 40157146 DOI: 10.1016/j.plaphy.2025.109830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Revised: 03/03/2025] [Accepted: 03/24/2025] [Indexed: 04/01/2025]
Abstract
Microorganisms produce volatile organic compounds (VOCs) that have biological impacts on plants; however, it is unknown how these molecules participate in plants' responses to abiotic stress. This study aimed to determine the potential benefit of 3-methyl-1-butanol (3 MB), a microbial VOC, in helping rice (Oryza sativa) seedlings suffering from salinity stress. Our study revealed that rice seedlings primed with microbial volatile 3 MB for 12 h before exposure to salinity stress could decrease reactive oxygen species (ROS) generation and cell damage in rice roots. Additionally, antioxidant systems such as peroxidase (POD) isozymes 4 and 5 and catalase 1 (CAT1) increased after treatment with 3 MB + NaCl. The microbial volatile 3 MB fumigation also raised the proline content and activated the proline-related genes under 3 MB + NaCl treatment. To further elucidate the molecular mechanisms by which 3 MB assists rice in tolerating salinity stress, transcriptomic analysis was used to investigate the genome-wide gene expressions. Totally, 287 up-regulated differentially expressed genes (DEGs) were found. They are associated with phytohormone regulation, transcription factors, redox signaling, and defense responses. Through Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and MapMan enrichment results of DEGs revealed that 3 MB could activate antioxidant systems, jasmonic acid (JA) pathway, and starch biosynthesis to generate more ATP, thus building a line of defense in response to salinity stress. This study provides valuation information indicating that microbial volatile 3 MB vapor can enhance salt stress tolerance in rice seedlings and clarify its underlying mechanism.
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Affiliation(s)
- Diem-Kieu Nguyen
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Tri-Phuong Nguyen
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Chih-Cheng Lin
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan
| | - Thach-Thao Ly
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan
| | - Yi-Rong Li
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Ching-Han Chang
- Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan
| | - Van-Anh Nguyen
- Intellectual Property Office of Vietnam, Thanh Xuan District, Ha Noi, Viet Nam
| | - Ngoc-Nam Trinh
- Industrial University of Ho Chi Minh City, Go Vap District, Ho Chi Minh, Viet Nam
| | - Hao-Jen Huang
- Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan; Graduate Program in Translational Agricultural Sciences, National Cheng Kung University and Academia Sinica, Tainan, Taiwan.
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3
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Wang Y, Chen X, Chen J. Advances of the mechanism for copper tolerance in plants. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2025; 350:112299. [PMID: 39455032 DOI: 10.1016/j.plantsci.2024.112299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 10/18/2024] [Accepted: 10/19/2024] [Indexed: 10/28/2024]
Abstract
Copper (Cu) is a vital trace element necessary for plants growth and development. It acts as a co-factor for enzymes and plays a crucial role in various physiological processes, including photosynthesis, respiration, antioxidant systems, and hormone signaling transduction. However, excessive amounts of Cu can disrupt normal physiological metabolism, thus hindering plant growth, development, and reducing yield. In recent years, the widespread abuse of Cu-containing fungicides and industrial Cu pollution has resulted in significant soil contamination. Therefore, it is of utmost importance to uncover the adverse effects of excessive Cu on plant growth and delve into the molecular mechanisms employed by plants to counteract the stress caused by excessive Cu. Recent studies have confirmed the inhibitory effects of excess Cu on mineral nutrition, chlorophyll biosynthesis, and antioxidant enzyme activity. This review systematically outlines the ways in which plants tolerate excessive Cu stress and summarizes them into eight Cu-tolerance strategies. Furthermore, it highlights the necessity for further research to comprehend the molecular regulatory mechanisms underlying the responses to excessive Cu stress.
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Affiliation(s)
- Yamei Wang
- School of Agriculture and Biotechnology, Shenzhen Campus, Sun Yat-sen University, Shenzhen 518107, China
| | - Xueke Chen
- School of Agriculture and Biotechnology, Shenzhen Campus, Sun Yat-sen University, Shenzhen 518107, China
| | - Jingguang Chen
- School of Agriculture and Biotechnology, Shenzhen Campus, Sun Yat-sen University, Shenzhen 518107, China.
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Ali MA, Nafees M, Alomrani SO, Li Y, Wang Q, Alshehri MA, Al-Ghanim KA, Ali S, Li F. Novel nanocomposite and biochar insights to boost rice growth and alleviation of Cd toxicity. Sci Rep 2024; 14:23158. [PMID: 39367099 PMCID: PMC11452507 DOI: 10.1038/s41598-024-73635-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 09/19/2024] [Indexed: 10/06/2024] Open
Abstract
Cadmium (Cd) is an unessential and pervasive contaminant in agricultural soil, eventually affecting the food and instigating health issues. The implication of nanocomposites in agriculture attained significant attention to drive food security. Nanocomposites possess exceptional characteristics to stun the challenges of chemical fertilizers that can enhance plant yield and better nutrient bioavailability. Similarly, biochar has the ability to immobilize Cd in soil by reducing mobility and bioavailability. Rice husk biochar is produced at high temperature pyrolysis under anoxic conditions and a stable carbon-rich material is formed. To strive against this issue, rice plants were subjected to Cd (15, 20 mg kg- 1) stress and treated with alone/combined Ca + Mg (25 mg L- 1) nanocomposite and rice husk biochar. In our study, growth and yield traits showed the nurturing influence of Ca + Mg nanocomposite and biochar to improve rice defence mechanism by reducing Cd stress. Growth parameters root length 28%, shoot length 34%, root fresh weight 19%, shoot fresh weight 16%, root dry weight 9%, shoot dry weight 8%, number of tillers 32%, number of grains 20%, and spike length 17% were improved with combined application of Ca + Mg and biochar, with Cd (20 mg kg- 1), rivalled to alone biochar. Combined Ca + Mg and biochar application increased the SPAD 23%, total chlorophyll 26%, a 19%, b 18%, and carotenoids 15%, with Cd (20 mg kg- 1), rivalled to alone biochar. MDA 15%, H2O2 13%, and EL 10% were significantly regulated in shoots with combined Ca + Mg and biochar application with Cd (20 mg kg- 1) compared to alone biochar. POD 22%, SOD 17%, APX 18%, and CAT 9% were increased in shoots with combined Ca + Mg and biochar application with Cd (20 mg kg- 1) compared to alone biochar. Cd uptake in roots 13%, shoots 14%, and grains 21% were minimized under Cd (20 mg kg- 1) with combined Ca + Mg and B. pumilus application, compared to alone biochar. Subsequently, combined Ca + Mg and biochar application is a sustainable solution to boost crop production under Cd stress.
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Affiliation(s)
- Muhammad Azhar Ali
- Institute of Coastal Environmental Pollution Control, Ministry of Education Key Laboratory of Marine Environment and Ecology, College of Environmental Science and Engineering, Sanya Oceanographic Institute, Ocean University of China, Qingdao, 266100, China
| | - Muhammad Nafees
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Nanjing, 21023, Jiangsu, China
| | - Sarah Owdah Alomrani
- Department of Biology, College of Science and Arts, Najran University, Najran, 66252, Saudi Arabia
| | - Yuanyuan Li
- Institute of Coastal Environmental Pollution Control, Ministry of Education Key Laboratory of Marine Environment and Ecology, College of Environmental Science and Engineering, Sanya Oceanographic Institute, Ocean University of China, Qingdao, 266100, China
| | - Qian Wang
- Institute of Coastal Environmental Pollution Control, Ministry of Education Key Laboratory of Marine Environment and Ecology, College of Environmental Science and Engineering, Sanya Oceanographic Institute, Ocean University of China, Qingdao, 266100, China
| | - Mohammed Ali Alshehri
- Department of Biology, Faculty of Science, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - Khalid A Al-Ghanim
- Department of Zoology, College of Science, King Saud University, P.O. Box 11451, Riyadh, Saudi Arabia
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, Pakistan.
- Department of Biological Sciences and Technology, China Medical University, Taichung, 40402, Taiwan, People's Republic of China.
| | - Fengmin Li
- Institute of Coastal Environmental Pollution Control, Ministry of Education Key Laboratory of Marine Environment and Ecology, College of Environmental Science and Engineering, Sanya Oceanographic Institute, Ocean University of China, Qingdao, 266100, China.
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Fakhr MA, Abu-Elsaoud AM, Alharbi K, Zia-Ur-Rehman M, Usman M, Soliman MH. Investigating the combined effects of β-sitosterol and biochar on nutritional value and drought tolerance in Phaseolus vulgaris under drought stress. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP24023. [PMID: 39222467 DOI: 10.1071/fp24023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 07/31/2024] [Indexed: 09/04/2024]
Abstract
Climate change-induced drought stress decreases crop productivity, but the application of β-sitosterol (BS) and biochar (BC) boosts crop growth and yield. A pot experiment was conducted to examine the effects of the alone and combined application of BS and BC on the growth and yield of Phaseolus vulgaris under drought stress. The synergistic application of BS and BC increased plant height (46.9cm), shoot dry weight (6.9g/pot), and root dry weight (2.5g/pot) of P. vulgaris plants under drought stress. The trend of applied treatments for photosynthetic rate remained as BC (15%)
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Affiliation(s)
- Marwa A Fakhr
- Botany Department, Faculty of Science, Fayoum University, Fayoum 63514, Egypt; and Green Materials Technology Department, Environment and Natural Materials Research Institute, City of Scientific Research and Technological Applications (SRTA-City), New Borg El-Arab City, Alexandria 21934, Egypt
| | - Abdelghafar M Abu-Elsaoud
- Department of Botany and Microbiology, Faculty of Science, Suez Canal University, Ismailia 41522, Egypt; and Department of Biology, College of Science, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh 11623, Kingdom of Saudi Arabia
| | - Khadiga Alharbi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
| | - Muhammad Zia-Ur-Rehman
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Punjab 38000, Pakistan
| | - Muhammad Usman
- Institute of Soil and Environmental Sciences, University of Agriculture, Faisalabad, Punjab 38000, Pakistan
| | - Mona H Soliman
- Botany and Microbiology Department, Faculty of Science, Cairo University, Giza 12613, Egypt; and Biology Department, Faculty of Science, Taibah University, Al-Sharm, Yanbu El-Bahr, Yanbu 46429, Kingdom of Saudi Arabia
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Adil MF, Sehar S, Ma Z, Tahira K, Askri SMH, El-Sheikh MA, Ahmad A, Zhou F, Zhao P, Shamsi IH. Insights into the alleviation of cadmium toxicity in rice by nano-zinc and Serendipita indica: Modulation of stress-responsive gene expression and antioxidant defense system activation. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 350:123952. [PMID: 38641035 DOI: 10.1016/j.envpol.2024.123952] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Revised: 02/17/2024] [Accepted: 04/08/2024] [Indexed: 04/21/2024]
Abstract
The adversities of cadmium (Cd) contamination are quite distinguished among other heavy metals (HMs), and so is the efficacy of zinc (Zn) nutrition in mitigating Cd toxicity. Rice (Oryza sativa) crop, known for its ability to absorb HMs, inadvertently facilitates the bioaccumulation of Cd, posing a significant risk to both the plant itself and to humans consuming its edible parts, and damaging the environment as well. The use of nanoparticles, such as nano-zinc oxide (nZnO), to improve the nutritional quality of crops and combat the harmful effects of HMs, have gained substantial attention among scientists and farmers. While previous studies have explored the individual effects of nZnO or Serendipita indica (referred to as S.i) on Cd toxicity, the synergistic action of these two agents has not been thoroughly investigated. Therefore, the gift of nature, i.e., S. indica, was incorporated alongside nZnO (50 mg L-1) against Cd stress (15 μM L-1) and their alliance manifested as phenotypic level modifications in two rice genotypes (Heizhan43; Hz43 and Yinni801; Yi801). Antioxidant activities were enhanced, specifically peroxidase (61.5 and 122.5% in Yi801 and Hz43 roots, respectively), leading to a significant decrease in oxidative burst; moreover, Cd translocation was reduced (85% for Yi801 and 65.5% for Hz43 compared to Cd alone treatment). Microstructural study showed a decrease in number of vacuoles and starch granules with ameliorative treatments. Overall, plants treated with nZnO displayed gene expression pattern (particularly of ZIP genes), different from the ones with alone or combined S.i and Cd. Inferentially, the integration of nZnO and S.i holds great promise as an effective strategy for alleviating Cd toxicity in rice plants. By immobilizing Cd ions in the soil and promoting their detoxification, this novel approach contributes to environmental restoration and ensures food safety worldwide.
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Affiliation(s)
- Muhammad Faheem Adil
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Shafaque Sehar
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Zhengxin Ma
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Khajista Tahira
- University Institute of Biochemistry and Biotechnology, PMAS-Arid Agriculture University, Rawalpindi 46000, Pakistan
| | - Syed Muhammad Hassan Askri
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China
| | - Mohamed A El-Sheikh
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Aqeel Ahmad
- Key Laboratory of Land Surface Pattern and Simulation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Fanrui Zhou
- Department of Food Science and Nutrition, College of Biosystems Engineering and Food Science, Zhejiang University, Hangzhou 310058, China; Key Laboratory of State Forestry and Grassland Administration on Highly Efficient Utilization of Forestry Biomass Resources in Southwest China, College of Material and Chemical Engineering, Southwest Forestry University, Kunming, 650224, China
| | - Ping Zhao
- Key Laboratory of State Forestry and Grassland Administration on Highly Efficient Utilization of Forestry Biomass Resources in Southwest China, College of Material and Chemical Engineering, Southwest Forestry University, Kunming, 650224, China; Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Ministry of Education, Southwest Forestry University, Kunming, 650224, China
| | - Imran Haider Shamsi
- Zhejiang Key Laboratory of Crop Germplasm Resource, Department of Agronomy, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
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Mu D, Zheng S, Lin D, Xu Y, Dong R, Pei P, Sun Y. Derivation and validation of soil cadmium thresholds for the safe farmland production of vegetables in high geological background area. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 873:162171. [PMID: 36775143 DOI: 10.1016/j.scitotenv.2023.162171] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 01/16/2023] [Accepted: 02/07/2023] [Indexed: 06/18/2023]
Abstract
Excessive dietary intake of cadmium (Cd) poses toxicity risks to human health, and it is therefore essential to establish accurate and regionally appropriate soil Cd thresholds that ensure the safety of agricultural products grown in different areas. This study investigated the differences in the Cd accumulation in 32 vegetable varieties and found that the Cd content ranged from 0.01 to 0.24 mg·kg-1, and decreased in the order of stem and bulb vegetables > leafy vegetables > solanaceous crops > bean cultivars. A correlation analysis and structural equation model showed that pH, soil organic matter, and the cation exchange capacity had significant effects on Cd accumulation in the vegetables and explained 72.1 % of the variance. In addition, species sensitivity distribution (SSD) curves showed that stem and bulb vegetables were more sensitive to Cd than other types of vegetables. Using the Burr Type III function for curve fitting, we derived Cd thresholds of 6.66, 4.15, and 1.57 mg·kg-1 for vegetable soils. These thresholds will ensure that 20 %, 50 %, and 95 % of these vegetable varieties were risk-free, respectively. The predicted threshold of soil Cd was more than twice that of China's current National Soil Quality Standard (GB 15618-2018) for Cd values. Therefore, soil scenarios and cultivars should be considered comprehensively when determining farmland soil thresholds. The present results provide a new model for setting soil Cd criteria in high geological background areas.
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Affiliation(s)
- Demiao Mu
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China
| | - Shunan Zheng
- Rural Energy & Environment Agency, MARA, Beijing 100125, China
| | - Dasong Lin
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China
| | - Yingming Xu
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China
| | - Ruyin Dong
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China
| | - Penggang Pei
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China
| | - Yuebing Sun
- Key Laboratory of Original Agro-Environmental Pollution Prevention and Control, Ministry of Agriculture and Rural Affairs (MARA), Agro-Environmental Protection Institute, MARA, Tianjin 300191, China; Tianjin Key Laboratory of Agro-Environment and Agro-Product Safety, Agro-Environmental Protection Institute, MARA, Tianjin 300191, China.
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Genome-Wide Identification of R2R3-MYB Transcription Factor and Expression Analysis under Abiotic Stress in Rice. PLANTS 2022; 11:plants11151928. [PMID: 35893632 PMCID: PMC9330779 DOI: 10.3390/plants11151928] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Revised: 07/22/2022] [Accepted: 07/23/2022] [Indexed: 11/22/2022]
Abstract
The myeloblastosis (MYB) family comprises a large group of transcription factors (TFs) that has a variety of functions. Among them, the R2R3-MYB type of proteins are the largest group in plants, which are involved in controlling various biological processes such as plant growth and development, physiological metabolism, defense, and responses to abiotic and biotic stresses. In this study, bioinformatics was adopted to conduct genome-wide identification of the R2R3-MYB TFs in rice. We identified 190 MYB TFs (99 R2R3-MYBs), which are unevenly distributed on the 12 chromosomes of rice. Based on the phylogenetic clustering and protein sequence characteristics, OsMYBs were classified into five subgroups, and 59.6% of the Os2R_MYB genes contained two introns. Analysis of cis-acting elements in the 2000 bp upstream region of Os2R_MYB genes showed that all Os2R_MYB genes contained plant hormones-related or stress-responsive elements since 91.9%, 79.8%, 79.8%, and 58.6% of Os2R_MYB genes contain ABRE, TGACG, CGTCA, and MBS motifs, respectively. Protein–protein network analysis showed that the Os2R_MYBs were involved in metabolic process, biosynthetic process, and tissue development. In addition, some genes showed a tissue-specific or developmental-stage-specific expression pattern. Moreover, the transcription levels of 20 Os2R_MYB genes under polyethylene glycol (PEG) and cadmium chloride (CdCl2) stress inducers were dissected by qRT-PCR. The results indicated genes with an altered expression upon PEG or CdCl2 stress induction. These results potentially supply a basis for further research on the role that Os2R_MYB genes play in plant development and stress responses.
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